Calcoco2-ps1 (calcium binding and coiled-coil domain 2, pseudogene 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Calcoco2-ps1 (calcium binding and coiled-coil domain 2, pseudogene 1) Rattus norvegicus
Analyze
Symbol: Calcoco2-ps1
Name: calcium binding and coiled-coil domain 2, pseudogene 1
RGD ID: 1589057
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC685829; similar to calcium binding and coiled-coil domain 2
Related Functional Gene: Calcoco2  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81655,330,934 - 55,333,132 (+)NCBIGRCr8
mRatBN7.21648,595,379 - 48,600,523 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.01651,786,383 - 51,788,350 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01651,510,585 - 51,512,137 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41651,825,141 - 51,826,575 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1646,575,124 - 46,577,091 (+)NCBICelera
Cytogenetic Map16q12.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Calcoco2-ps1
47 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16422760948972724Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760949227609Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)161900443575226532Rat
2302057Pia29Pristane induced arthritis QTL 293.60.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)162173597566735975Rat
8694453Bw172Body weight QTL 1728.330.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)162432551369325513Rat
6903294Stl30Serum triglyceride level QTL 302.60.0013blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)162515279370152793Rat
1298529Arunc1Aerobic running capacity QTL 14exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)163195152060148445Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)163528887080288870Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)163775215682752156Rat
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)163775215682752156Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164239634584729064Rat
631833Sach2Saccharin preference QTL 240.01consumption behavior trait (VT:0002069)calculated saccharin drink intake rate (CMO:0001613)164302484250166018Rat

Markers in Region
D16Got41  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21648,596,801 - 48,596,997 (+)MAPPERmRatBN7.2
Rnor_6.01651,784,746 - 51,784,941NCBIRnor6.0
Rnor_5.01651,508,999 - 51,509,194UniSTSRnor5.0
RGSC_v3.41651,828,083 - 51,828,279RGDRGSC3.4
RGSC_v3.41651,828,084 - 51,828,279UniSTSRGSC3.4
RGSC_v3.11651,828,159 - 51,828,354RGD
Celera1646,573,487 - 46,573,682UniSTS
RH 3.4 Map16474.9UniSTS
RH 3.4 Map16474.9RGD
RH 2.0 Map16531.7RGD
Cytogenetic Map16q12.1UniSTS


Expression


Sequence


RefSeq Acc Id: XR_596475
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01651,786,398 - 51,787,884 (+)NCBI
RefSeq Acc Id: XR_597267
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1646,575,139 - 46,576,625 (+)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-11296 BioCyc
NCBI Gene 685829 ENTREZGENE
PhenoGen Calcoco2-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Calcoco2-ps1  calcium binding and coiled-coil domain 2, pseudogene 1  LOC685829  similar to calcium binding and coiled-coil domain 2  Symbol and Name Changed 1299863 APPROVED
2006-11-19 LOC685829  similar to calcium binding and coiled-coil domain 2      Symbol and Name status set to provisional 70820 PROVISIONAL