Vom2r79 (vomeronasal 2 receptor, 79) - Rat Genome Database

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Gene: Vom2r79 (vomeronasal 2 receptor, 79) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Vom2r79
Name: vomeronasal 2 receptor, 79
RGD ID: 1588571
Description: Predicted to enable G protein-coupled receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane; INTERACTS WITH tributylstannane.
Type: protein-coding
RefSeq Status: INFERRED
Previously known as: LOC301137; similar to putative pheromone receptor (Go-VN5); vomeronasal 2 receptor 79
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr892,592,854 - 2,640,375 (+)NCBIGRCr8
mRatBN7.292,505,897 - 2,553,420 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl92,505,673 - 2,553,420 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx92,927,622 - 2,977,274 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.098,277,006 - 8,326,662 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.097,232,848 - 7,282,504 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.099,214,429 - 9,263,050 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl99,214,429 - 9,263,050 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.098,218,607 - 8,267,236 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera95,983,385 - 6,026,103 (-)NCBICelera
Cytogenetic Map9q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
plasma membrane  (IBA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
Additional References at PubMed
PMID:17382427  


Genomics

Variants

.
Variants in Vom2r79
585 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:16
Count of miRNA genes:16
Interacting mature miRNAs:16
Transcripts:ENSRNOT00000041588
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054141Gmadr4Adrenal mass QTL 42.450.0074adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)9114209783Rat
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9125661317Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

respiratory system
High
Medium
Low
Below cutoff 1

Sequence


RefSeq Acc Id: ENSRNOT00000041588   ⟹   ENSRNOP00000051479
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl92,505,673 - 2,553,420 (+)Ensembl
Rnor_6.0 Ensembl99,214,429 - 9,263,050 (-)Ensembl
RefSeq Acc Id: NM_001099504   ⟹   NP_001092974
RefSeq Status: INFERRED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr892,592,854 - 2,640,375 (+)NCBI
mRatBN7.292,505,897 - 2,553,420 (+)NCBI
Rnor_6.099,214,429 - 9,263,050 (-)NCBI
Rnor_5.098,218,607 - 8,267,236 (-)NCBI
Celera95,983,385 - 6,026,103 (-)RGD
Sequence:
RefSeq Acc Id: XM_063266831   ⟹   XP_063122901
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr892,592,863 - 2,640,375 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001092974 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122901 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000051479
  ENSRNOP00000051479.3
RefSeq Acc Id: NP_001092974   ⟸   NM_001099504
- Peptide Label: precursor
- UniProtKB: F1M1H4 (UniProtKB/TrEMBL),   A6KQQ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000051479   ⟸   ENSRNOT00000041588
RefSeq Acc Id: XP_063122901   ⟸   XM_063266831
- Peptide Label: isoform X1
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M1H4-F1-model_v2 AlphaFold F1M1H4 1-864 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1588571 AgrOrtholog
BioCyc Gene G2FUF-28474 BioCyc
Ensembl Genes ENSRNOG00000047337 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000041588 ENTREZGENE
  ENSRNOT00000041588.4 UniProtKB/TrEMBL
Gene3D-CATH 2.10.50.30 UniProtKB/TrEMBL
  3.40.50.2300 UniProtKB/TrEMBL
InterPro ANF_lig-bd_rcpt UniProtKB/TrEMBL
  GPCR_3 UniProtKB/TrEMBL
  GPCR_3_9-Cys_dom UniProtKB/TrEMBL
  GPCR_3_9-Cys_sf UniProtKB/TrEMBL
  GPCR_3_C UniProtKB/TrEMBL
  GPCR_3_Ca_sens_rcpt-rel UniProtKB/TrEMBL
  GPCR_3_vmron_rcpt_2 UniProtKB/TrEMBL
  Peripla_BP_I UniProtKB/TrEMBL
KEGG Report rno:301137 UniProtKB/TrEMBL
NCBI Gene 301137 ENTREZGENE
PANTHER PTHR24061 UniProtKB/TrEMBL
  VOMERONASAL 2, RECEPTOR 118-RELATED UniProtKB/TrEMBL
Pfam 7tm_3 UniProtKB/TrEMBL
  ANF_receptor UniProtKB/TrEMBL
  NCD3G UniProtKB/TrEMBL
PhenoGen Vom2r79 PhenoGen
PRINTS GPCRMGR UniProtKB/TrEMBL
  VOMERONASL2R UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F3_4 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000047337 RatGTEx
Superfamily-SCOP SSF53822 UniProtKB/TrEMBL
UniProt A6KQQ0 ENTREZGENE, UniProtKB/TrEMBL
  F1M1H4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-07-23 Vom2r79  vomeronasal 2 receptor, 79    vomeronasal 2 receptor 79  Symbol and Name updated 1299863 APPROVED
2008-05-02 Vom2r79  vomeronasal 2 receptor 79  LOC301137  similar to putative pheromone receptor (Go-VN5)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-19 LOC301137  similar to putative pheromone receptor (Go-VN5)      Symbol and Name status set to provisional 70820 PROVISIONAL