Fut4-ps1 (fucosyltransferase 4, pseudogene 1) - Rat Genome Database

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Gene: Fut4-ps1 (fucosyltransferase 4, pseudogene 1) Rattus norvegicus
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Symbol: Fut4-ps1
Name: fucosyltransferase 4, pseudogene 1
RGD ID: 1588473
Description: Predicted to enable 4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase activity. Predicted to be involved in N-glycan fucosylation; protein glycosylation; and sphingolipid metabolic process. Predicted to be located in Golgi apparatus and extracellular region. Orthologous to human FUT6 (fucosyltransferase 6); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine (ortholog); acrylamide (ortholog); antirheumatic drug (ortholog).
Type: pseudo
RefSeq Status: MODEL
Previously known as: alpha-(1,3)-fucosyltransferase 6; LOC367454; similar to Alpha-(1,3)-fucosyltransferase (Galactoside 3-L-fucosyltransferase) (Fucosyltransferase 6) (FUCT-VI)
RGD Orthologs
Human
Bonobo
Dog
Pig
Alliance Orthologs
More Info more info ...
Related Functional Gene: Fut4  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr891,656,732 - 1,659,085 (+)NCBIGRCr8
mRatBN7.291,569,605 - 1,572,022 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0910,309,050 - 10,318,899 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.099,306,130 - 9,316,513 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera96,937,227 - 6,946,997 (-)NCBICelera
Cytogenetic Map9q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:9363434   PMID:9451035   PMID:17604274   PMID:19199708   PMID:23376485  


Genomics

Comparative Map Data
Fut4-ps1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr891,656,732 - 1,659,085 (+)NCBIGRCr8
mRatBN7.291,569,605 - 1,572,022 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0910,309,050 - 10,318,899 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.099,306,130 - 9,316,513 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera96,937,227 - 6,946,997 (-)NCBICelera
Cytogenetic Map9q11NCBI
FUT6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38195,830,408 - 5,839,702 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl195,830,408 - 5,839,722 (-)EnsemblGRCh38hg38GRCh38
GRCh37195,830,419 - 5,839,713 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36195,781,637 - 5,790,742 (-)NCBINCBI36Build 36hg18NCBI36
Build 34195,767,403 - 5,790,703NCBI
Celera195,769,631 - 5,778,704 (-)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef195,590,485 - 5,599,559 (-)NCBIHuRef
CHM1_1195,830,900 - 5,839,974 (-)NCBICHM1_1
T2T-CHM13v2.0195,817,873 - 5,827,142 (-)NCBIT2T-CHM13v2.0
FUT6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22010,225,322 - 10,228,043 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1199,451,074 - 9,454,236 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0194,846,423 - 4,857,328 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1195,778,452 - 5,789,906 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl195,779,200 - 5,780,389 (-)Ensemblpanpan1.1panPan2
FUT5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12054,216,560 - 54,238,103 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2054,224,789 - 54,225,841 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2053,952,213 - 53,953,265 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02054,861,376 - 54,862,428 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2054,861,277 - 54,862,428 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12053,927,739 - 53,928,791 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02054,376,823 - 54,377,874 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02054,605,352 - 54,606,404 (+)NCBIUU_Cfam_GSD_1.0
LOC100513844
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1273,152,451 - 73,171,616 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2273,642,050 - 73,663,391 (-)NCBISscrofa10.2Sscrofa10.2susScr3

Variants

.
Variants in Fut4-ps1
3 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9125661317Rat
10054141Gmadr4Adrenal mass QTL 42.450.0074adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)9114209783Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat

Markers in Region
RH140794  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.291,555,393 - 1,555,591 (-)MAPPERmRatBN7.2
Rnor_6.0910,333,059 - 10,333,256NCBIRnor6.0
Rnor_5.099,330,139 - 9,330,336UniSTSRnor5.0
Celera96,961,157 - 6,961,354UniSTS


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_017596892   ⟹   XP_017452381
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0910,309,050 - 10,318,899 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017603758   ⟹   XP_017459247
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera96,937,227 - 6,946,997 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1588473 AgrOrtholog
BioCyc Gene G2FUF-28515 BioCyc
NCBI Gene 367454 ENTREZGENE
PhenoGen Fut4-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Fut4-ps1  fucosyltransferase 4, pseudogene 1  LOC367454  similar to Alpha-(1,3)-fucosyltransferase (Galactoside 3-L-fucosyltransferase) (Fucosyltransferase 6) (FUCT-VI)  Symbol and Name Changed 1299863 APPROVED
2006-11-19 LOC367454  similar to Alpha-(1,3)-fucosyltransferase (Galactoside 3-L-fucosyltransferase) (Fucosyltransferase 6) (FUCT-VI)      Symbol and Name status set to provisional 70820 PROVISIONAL