Gapt (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 2 | 43,660,900 - 43,665,485 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 2 | 41,927,533 - 41,932,120 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 2 | 41,927,532 - 41,932,093 (-) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 2 | 49,043,301 - 49,045,606 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 2 | 47,102,029 - 47,104,334 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 2 | 41,955,033 - 41,957,338 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 2 | 41,869,555 - 41,874,130 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 2 | 41,869,556 - 41,871,858 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 2 | 60,928,713 - 60,933,268 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 2 | 41,759,021 - 41,761,323 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | Celera | 2 | 37,743,893 - 37,746,195 (-) | NCBI | | Celera | | | Cytogenetic Map | 2 | q14 | NCBI | | | | |
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GAPT (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 5 | 58,491,435 - 58,497,090 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 5 | 58,491,435 - 58,497,090 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 5 | 57,787,262 - 57,792,917 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 5 | 57,823,087 - 57,827,942 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 5 | 54,725,819 - 54,730,674 (+) | NCBI | | Celera | | | Cytogenetic Map | 5 | q11.2 | NCBI | | | | | HuRef | 5 | 54,744,437 - 54,749,291 (+) | NCBI | | HuRef | | | CHM1_1 | 5 | 57,786,938 - 57,791,793 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 5 | 59,309,277 - 59,314,932 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Gapt (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 13 | 110,489,148 - 110,493,739 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 13 | 110,489,150 - 110,493,733 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 13 | 110,352,614 - 110,357,220 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 13 | 110,352,616 - 110,357,199 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 13 | 111,142,823 - 111,147,380 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 13 | 111,473,493 - 111,478,050 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 13 | 114,687,702 - 114,692,344 (-) | NCBI | | Celera | | | Cytogenetic Map | 13 | D2.1 | NCBI | | | | | cM Map | 13 | 61.87 | NCBI | | | | |
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Gapt (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
---|
ChiLan1.0 | NW_004955446 | 9,631,970 - 9,639,215 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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GAPT (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 4 | 55,420,337 - 55,422,156 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 5 | 53,573,969 - 53,575,788 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 5 | 55,509,317 - 55,510,711 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 5 | 57,144,459 - 57,145,229 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 5 | 57,144,608 - 57,145,081 (-) | Ensembl | panpan1.1 | | panPan2 | |
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GAPT (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 2 | 45,383,244 - 45,402,649 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 2 | 45,397,899 - 45,398,369 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 2 | 42,454,805 - 42,474,050 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 2 | 45,867,354 - 45,887,661 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 2 | 45,867,268 - 45,884,254 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 2 | 42,937,807 - 42,957,684 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 2 | 43,743,459 - 43,763,829 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 2 | 44,563,509 - 44,583,897 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Gapt (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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GAPT (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
Sscrofa11.1 Ensembl | 16 | 37,344,415 - 37,349,685 (+) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 16 | 37,321,879 - 37,351,944 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 16 | 40,110,438 - 40,115,763 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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GAPT (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChlSab1.1 | 4 | 54,671,271 - 54,675,882 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 4 | 54,675,265 - 54,675,738 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666049 | 3,588,326 - 3,593,769 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Gapt (Heterocephalus glaber - naked mole-rat) |
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