Zfp622l1 (zinc finger protein 622 like 1) - Rat Genome Database

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Gene: Zfp622l1 (zinc finger protein 622 like 1) Rattus norvegicus
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Symbol: Zfp622l1
Name: zinc finger protein 622 like 1
RGD ID: 1586334
Description: Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to be involved in ribosomal large subunit biogenesis. Predicted to be located in cytoplasm and nucleus.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cytoplasmic 60S subunit biogenesis factor ZNF622-like; LOC689966; similar to zinc finger protein 622; zinc finger protein 622-like
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8942,974,594 - 42,976,174 (-)NCBIGRCr8
mRatBN7.2935,478,603 - 35,480,175 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.0938,960,698 - 38,962,271 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0938,638,787 - 38,640,307 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4931,985,198 - 31,986,588 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera933,273,314 - 33,274,884 (-)NCBICelera
Cytogenetic Map9q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References

Genomics

Variants

.
Variants in Zfp622l1
7 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93253550577535505Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)92375402461381613Rat
631680Cm11Cardiac mass QTL 113.10.00089heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)92043051965430519Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92526804479271759Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
7207805Bmd88Bone mineral density QTL 884femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)92375402458157242Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)92207120067071200Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
9589133Insul26Insulin level QTL 2617.960.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)9895256053952560Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9510982650109826Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat
7411609Foco16Food consumption QTL 1625.60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9895256053952560Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92207116986369743Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)92375414483851531Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9510982642921101Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
724543Cm20Cardiac mass QTL 203.9heart mass (VT:0007028)calculated heart weight (CMO:0000073)91696139840594091Rat
1600365Mcs20Mammary carcinoma susceptibility QTL 203mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)91353377042791750Rat
11353947Bp392Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)9728325252283252Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)93253550577535505Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
1598823Memor16Memory QTL 161.9exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)92213332249968732Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)92746863972468639Rat

Markers in Region
STS-AA009781  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2935,478,627 - 35,478,787 (-)MAPPERmRatBN7.2
mRatBN7.2276,494,213 - 76,494,373 (+)MAPPERmRatBN7.2
Rnor_6.0938,962,097 - 38,962,256NCBIRnor6.0
Rnor_5.0938,640,154 - 38,640,313UniSTSRnor5.0
RGSC_v3.4931,985,090 - 31,985,249UniSTSRGSC3.4
Celera933,273,333 - 33,273,492UniSTS
Cytogenetic Map9q21UniSTS
RH134526  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.0938,639,969 - 38,640,187UniSTSRnor5.0
Rnor_5.0297,991,384 - 97,992,496UniSTSRnor5.0
RGSC_v3.4931,985,216 - 31,985,434UniSTSRGSC3.4
RGSC_v3.4277,584,448 - 77,585,560UniSTSRGSC3.4
Celera933,273,459 - 33,273,677UniSTS
Celera272,200,831 - 72,201,943UniSTS
RH 3.4 Map9355.89UniSTS
Cytogenetic Map2q22UniSTS
Cytogenetic Map9q21UniSTS
AU016070  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.0298,108,193 - 98,108,286NCBIRnor5.0
Rnor_5.0938,640,166 - 38,640,259NCBIRnor5.0
RGSC_v3.4931,985,144 - 31,985,236UniSTSRGSC3.4
RGSC_v3.4277,585,540 - 77,585,632UniSTSRGSC3.4
Celera933,273,387 - 33,273,479UniSTS
Celera272,201,923 - 72,202,015UniSTS
Cytogenetic Map9q21UniSTS
Cytogenetic Map2q22UniSTS
REN91033  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.0938,639,945 - 38,640,201UniSTSRnor5.0
Rnor_5.0297,991,360 - 97,992,510UniSTSRnor5.0
RGSC_v3.4931,985,202 - 31,985,458UniSTSRGSC3.4
RGSC_v3.4277,584,424 - 77,585,574UniSTSRGSC3.4
Celera933,273,445 - 33,273,701UniSTS
Celera272,200,807 - 72,201,957UniSTS
Cytogenetic Map9q21UniSTS
Cytogenetic Map2q22UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_039084520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_039084520   ⟹   XP_038940448
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8942,974,594 - 42,976,174 (-)NCBI
mRatBN7.2935,478,603 - 35,480,175 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038940448 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000075424.2
RefSeq Acc Id: XP_038940448   ⟸   XM_039084520
- UniProtKB: A0A8L2URM4 (UniProtKB/TrEMBL)
Protein Domains
C2H2-type

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-27884 BioCyc
Ensembl Genes ENSRNOG00000010589 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000084541.2 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Matrin/U1-like-C_Znf_C2H2 UniProtKB/TrEMBL
  ZN622/Rei1/Reh1_Znf-C2H2 UniProtKB/TrEMBL
  Znf622/Rei1/Reh1 UniProtKB/TrEMBL
  Znf_C2H2_jaz UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene 689966 ENTREZGENE
PANTHER ZINC FINGER PROTEIN 622 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 622 UniProtKB/TrEMBL
Pfam zf-C2H2_2 UniProtKB/TrEMBL
  zf-C2H2_jaz UniProtKB/TrEMBL
PhenoGen Zfp622l1 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000010589 RatGTEx
SMART ZnF_C2H2 UniProtKB/TrEMBL
  ZnF_U1 UniProtKB/TrEMBL
Superfamily-SCOP beta-beta-alpha zinc fingers UniProtKB/TrEMBL
UniProt A0A8L2URM4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Zfp622l1  zinc finger protein 622 like 1  LOC689966  similar to zinc finger protein 622  Symbol and Name Changed 1299863 APPROVED
2008-05-28 LOC689966  similar to zinc finger protein 622   LOC689966  similar to zinc finger protein 622 (predicted)  'predicted' is removed from gene name 2292626 APPROVED
2008-01-09 LOC689966  similar to zinc finger protein 622 (predicted)  LOC679001  similar to zinc finger protein 622 (predicted)  Data merged from RGD:1593122 1643240 APPROVED
2006-11-20 LOC679001  similar to zinc finger protein 622 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC689966  similar to zinc finger protein 622 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL