1700067P10Rikl (RIKEN cDNA 1700067P10 gene like) - Rat Genome Database

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Gene: 1700067P10Rikl (RIKEN cDNA 1700067P10 gene like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: 1700067P10Rikl (Ensembl: LOC680955)
Name: RIKEN cDNA 1700067P10 gene like (Ensembl:hypothetical protein LOC680955)
RGD ID: 1585834
Description: Predicted to be located in membrane.
Type: ncrna (Ensembl: protein-coding)
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC680955; LOC680955; uncharacterized protein LOC680955
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8920,392,884 - 20,394,182 (-)NCBIGRCr8
mRatBN7.2912,895,294 - 12,896,592 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl912,895,265 - 12,896,602 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0914,904,867 - 14,906,407 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl914,904,864 - 14,906,410 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0913,828,629 - 13,830,136 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.498,304,527 - 8,305,430 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera910,651,635 - 10,653,113 (-)NCBICelera
Cytogenetic Map9q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

References
Additional References at PubMed
PMID:22871113  


Genomics

Variants

.
Variants in 1700067P10Rikl
3 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:114
Count of miRNA genes:90
Interacting mature miRNAs:94
Transcripts:ENSRNOT00000061674
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054141Gmadr4Adrenal mass QTL 42.450.0074adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)9114209783Rat
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9125661317Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat
1578675Bss17Bone structure and strength QTL 173.8femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)9336865213533896Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9510982642921101Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9510982650109826Rat
11353947Bp392Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)9728325252283252Rat
61450Ciaa3CIA Autoantibody QTL 36.5blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)9795472022071169Rat
9589133Insul26Insulin level QTL 2617.960.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)9895256053952560Rat
7411609Foco16Food consumption QTL 1625.60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9895256053952560Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system integumental system musculoskeletal system nervous system reproductive system appendage
High
Medium 8
Low 4
Below cutoff 1 1 1 1 9 1

Sequence


RefSeq Acc Id: ENSRNOT00000061674   ⟹   ENSRNOP00000058386
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl912,895,265 - 12,896,602 (-)Ensembl
Rnor_6.0 Ensembl914,904,864 - 14,906,410 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000073333   ⟹   ENSRNOP00000064777
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl912,895,265 - 12,896,602 (-)Ensembl
RefSeq Acc Id: NR_176810
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8920,392,884 - 20,394,182 (-)NCBI
mRatBN7.2912,895,294 - 12,896,592 (-)NCBI
RefSeq Acc Id: NR_176811
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8920,392,884 - 20,394,182 (-)NCBI
mRatBN7.2912,895,294 - 12,896,592 (-)NCBI
RefSeq Acc Id: NR_176812
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8920,392,884 - 20,394,182 (-)NCBI
mRatBN7.2912,895,294 - 12,896,592 (-)NCBI
Protein Sequences
GenBank Protein EDM18913 (Get FASTA)   NCBI Sequence Viewer  
  EDM18914 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000058386.1
  ENSRNOP00000064777.3
RefSeq Acc Id: ENSRNOP00000058386   ⟸   ENSRNOT00000061674
RefSeq Acc Id: ENSRNOP00000064777   ⟸   ENSRNOT00000073333

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZHC6-F1-model_v2 AlphaFold D3ZHC6 1-181 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1585834 AgrOrtholog
BioCyc Gene G2FUF-28289 BioCyc
Ensembl Genes ENSRNOG00000040095 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000061674 ENTREZGENE
  ENSRNOT00000061674.3 UniProtKB/TrEMBL
  ENSRNOT00000073333.3 UniProtKB/TrEMBL
KEGG Report rno:680955 UniProtKB/TrEMBL
NCBI Gene 680955 ENTREZGENE
PhenoGen 1700067P10Rikl PhenoGen
RatGTEx ENSRNOG00000040095 RatGTEx
RNAcentral URS00025E34F6 RNACentral
  URS00025E351C RNACentral
  URS00025E354F RNACentral
UniProt D3ZHC6_RAT UniProtKB/TrEMBL
  M0R5U8_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 1700067P10Rikl  RIKEN cDNA 1700067P10 gene like  LOC680955  hypothetical protein LOC680955  Symbol and Name Changed 1299863 APPROVED
2008-01-09 LOC680955  hypothetical protein LOC680955  LOC682995  hypothetical protein LOC682995  Data merged from RGD:1592750 1643240 APPROVED
2006-11-20 LOC682995  hypothetical protein LOC682995      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC680955  hypothetical protein LOC680955      Symbol and Name status set to provisional 70820 PROVISIONAL