Hmgn1l1 (high mobility group nucleosomal binding domain 1 like 1) - Rat Genome Database

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Gene: Hmgn1l1 (high mobility group nucleosomal binding domain 1 like 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Hmgn1l1 (Ensembl: LOC680964)
Name: high mobility group nucleosomal binding domain 1 like 1 (Ensembl:similar to high mobility group nucleosomal binding domain 1)
RGD ID: 1585825
Description: Predicted to enable nucleosomal DNA binding activity. Predicted to be located in nucleus. Predicted to be part of chromatin.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: AABR07059807.1; LOC680964; non-histone chromosomal protein HMG-14-like; similar to high mobility group nucleosomal binding domain 1
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8439,571,856 - 39,572,214 (-)NCBIGRCr8
mRatBN7.2438,604,856 - 38,606,026 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl438,605,721 - 38,606,011 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0436,755,323 - 36,755,912 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl436,755,625 - 36,755,912 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_5.0436,606,951 - 36,607,540 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4435,701,300 - 35,701,590 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera434,059,796 - 34,060,385 (-)NCBICelera
Cytogenetic Map4q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromatin  (IEA)
nucleus  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Hmgn1l1
8 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829457114705Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41467806559678065Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41008408955084089Rat
8655949Rf62Renal function QTL 6222blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)43443011944463908Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41008408955084089Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
70222Eae2Experimental allergic encephalomyelitis QTL 24.3nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)42133334339505420Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521917856647776Rat
6478769Anxrr48Anxiety related response QTL 480.02514locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)41008408955084089Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41081417091360527Rat
634323Hc2Hypercalciuria QTL 22.15urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)421079645210796Rat
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)41793350862933508Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)436303261103194984Rat
631209Bw2Body weight QTL24.2retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)4994088544463908Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)42690728575585128Rat
8694374Bw155Body weight QTL 1553.390.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)41008408955084089Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
8552801Bw143Body weight QTL 1437.3body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)43443048482490359Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)42133334362278020Rat
2290374Gluco32Glucose level QTL 326.27blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43717795044463908Rat
6478724Anxrr35Anxiety related response QTL 350.00449defecation behavior trait (VT:0010462)defecation measurement (CMO:0000997)41008408955084089Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)42949419581006281Rat
61415Eae11Experimental allergic encephalomyelitis QTL 112.9nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)4139505420Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4521460278882945Rat
6909122Insul22Insulin level QTL 224.63blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)42690728575585128Rat
8552809Vie5Viral induced encephalitis QTL 525.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
4889511Gluco61Glucose level QTL 614.70.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43717795040869000Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829465958103Rat
1300156Bp179Blood pressure QTL 1792.85arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)43846577439524530Rat
9590304Scort17Serum corticosterone level QTL 174.960.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)41008408955084089Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)432583980114627242Rat
11530004Niddm71Non-insulin dependent diabetes mellitus QTL 710.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43258419952754138Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1354665Stl10Serum triglyceride level QTL 103.57blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)42133334344463908Rat
1300141Bp178Blood pressure QTL 178arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)41002490139524530Rat


Expression


Sequence


Ensembl Acc Id: ENSRNOT00000071058   ⟹   ENSRNOP00000095686
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl438,605,721 - 38,606,011 (-)Ensembl
RefSeq Acc Id: XM_063286823   ⟹   XP_063142893
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8439,571,856 - 39,572,214 (-)NCBI
Protein Sequences
Protein RefSeqs XP_063142893 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000095686.1
Ensembl Acc Id: ENSRNOP00000095686   ⟸   ENSRNOT00000071058
RefSeq Acc Id: XP_063142893   ⟸   XM_063286823
- UniProtKB: A0A8I6APM2 (UniProtKB/TrEMBL)

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-45646 BioCyc
Ensembl Genes ENSRNOG00000047566 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000071058.3 UniProtKB/TrEMBL
InterPro HMGN_fam UniProtKB/TrEMBL
NCBI Gene 680964 ENTREZGENE
PANTHER NON-HISTONE CHROMOSOMAL PROTEIN HMG-14 UniProtKB/TrEMBL
  NONHISTONE CHROMOSOMAL PROTEIN HMG UniProtKB/TrEMBL
Pfam HMG14_17 UniProtKB/TrEMBL
PhenoGen Hmgn1l1 PhenoGen
PRINTS NONHISHMG17 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000047566 RatGTEx
SMART HMG17 UniProtKB/TrEMBL
UniProt A0A8I6APM2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Hmgn1l1  high mobility group nucleosomal binding domain 1 like 1  LOC680964  similar to high mobility group nucleosomal binding domain 1  Symbol and Name Changed 1299863 APPROVED
2022-06-02 LOC680964  similar to high mobility group nucleosomal binding domain 1  AABR07059807.1    Data merged from RGD:15005285 737654 PROVISIONAL
2019-11-08 AABR07059807.1        Symbol and Name status set to provisional 45752 PROVISIONAL
2008-05-28 LOC680964  similar to high mobility group nucleosomal binding domain 1   LOC680964  similar to high mobility group nucleosomal binding domain 1 (predicted)  'predicted' is removed from gene name 2292626 APPROVED
2008-01-09 LOC680964  similar to high mobility group nucleosomal binding domain 1 (predicted)  LOC679417  similar to high mobility group nucleosomal binding domain 1 (predicted)  Data merged from RGD:1588346 1643240 APPROVED
2006-11-19 LOC680964  similar to high mobility group nucleosomal binding domain 1 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC679417  similar to high mobility group nucleosomal binding domain 1 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL