Actb-ps9 (actin, beta, pseudogene 9) - Rat Genome Database

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Gene: Actb-ps9 (actin, beta, pseudogene 9) Rattus norvegicus
Analyze
Symbol: Actb-ps9
Name: actin, beta, pseudogene 9
RGD ID: 1584843
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC502977; similar to cytoplasmic beta-actin
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25120,658,714 - 120,659,243 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.05125,373,711 - 125,374,253 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05129,231,099 - 129,231,618 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45126,881,809 - 126,892,290 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5119,421,799 - 119,422,341 (-)NCBICelera
Cytogenetic Map5q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Actb-ps9
3 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)531663789131345958Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535189153141643988Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)543726656129132602Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)550328551141643988Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555805606132207589Rat
1358895Bp254Blood pressure QTL 2543.60.0003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)558829236128034027Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)559793399143070159Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
2306971Anxrr21Anxiety related response QTL 219.47fear/anxiety-related behavior trait (VT:1000241)number of entries into a discrete space in an experimental apparatus (CMO:0000960)566174080124160948Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)569540295151018848Rat
1298070Scl18Serum cholesterol level QTL 183.7blood LDL cholesterol amount (VT:0000181)calculated plasma low density lipoprotein cholesterol level (CMO:0001245)579584860124584860Rat
1598846Bp293Blood pressure QTL 2933.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)579584860124584860Rat
1598859Cm66Cardiac mass QTL 662heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)579584860124584860Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1298086Bp156Blood pressure QTL 156arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)584132602129132602Rat
7411601Foco12Food consumption QTL 1219.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)587468046132468046Rat
7411564Bw135Body weight QTL 1350.001body mass (VT:0001259)body weight gain (CMO:0000420)587468046132468046Rat
7411582Foco3Food consumption QTL 37.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)587468046132468046Rat
6903316Bw113Body weight QTL 11320.0103body mass (VT:0001259)body weight (CMO:0000012)587765973132765973Rat
1358889Bp261Blood pressure QTL 2612.86arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)590067849128034027Rat
1358909Kidm25Kidney mass QTL 251.87kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)590067849128034027Rat
631527Tls1T-lymphoma susceptibility QTL 100.001thymus integrity trait (VT:0010555)post-insult time to onset of T-cell lymphoma (CMO:0001907)590450144135450144Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)594858972143070159Rat
1331796Thshl2Thyroid stimulating hormone level QTL 22.3blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)597059760147465714Rat
2317753Glom24Glomerulus QTL 243.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)597570330136479578Rat
1358187Emca1Estrogen-induced mammary cancer QTL 14.4mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)599216724148607142Rat
1578673Bmd13Bone mineral density QTL 134.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)5103689353148689353Rat
2317056Wbc3White blood cell count QTL 32.510.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)5105999803150999803Rat
7207488Bss110Bone structure and strength QTL 18.4femur strength trait (VT:0010010)femur stiffness (CMO:0001674)5106906205151906205Rat
7207491Bss112Bone structure and strength QTL 1127femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)5106906205151906205Rat
7207481Bss106Bone structure and strength QTL 1067.9femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5106906205151906205Rat
7207486Bss109Bone structure and strength QTL 109femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)5106906205151906205Rat
1549838Bss4Bone structure and strength QTL 49.2femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)5106906205151906205Rat
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5108845856153845856Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5108845856153845856Rat
8657050Bw146Body weight QTL 14619.840.001body mass (VT:0001259)body weight gain (CMO:0000420)5108938288153938288Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5111416838156416838Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5111416838156416838Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5111416838156416838Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5111416838156416838Rat
7794739Bp372Blood pressure QTL 3720.0058arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5117913688125222967Rat
1582230Bw78Body weight QTL 783.20.0016epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)5119085612128034027Rat

Markers in Region
PMC108483P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,577 - 11,666,050 (+)MAPPERmRatBN7.2
mRatBN7.25120,658,748 - 120,659,098 (+)MAPPERmRatBN7.2
Rnor_6.05125,373,746 - 125,374,095NCBIRnor6.0
Rnor_6.01213,718,309 - 13,718,781NCBIRnor6.0
Rnor_5.01215,748,322 - 15,748,794UniSTSRnor5.0
Rnor_5.05129,231,139 - 129,231,488UniSTSRnor5.0
RGSC_v3.45126,881,783 - 126,882,132UniSTSRGSC3.4
RGSC_v3.41212,049,536 - 12,050,008UniSTSRGSC3.4
Celera1213,454,909 - 13,455,381UniSTS
Celera5119,421,834 - 119,422,183UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic Map5q34UniSTS
PMC117781P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25120,658,755 - 120,659,098 (+)MAPPERmRatBN7.2
mRatBN7.21211,665,577 - 11,666,043 (+)MAPPERmRatBN7.2
Rnor_6.01213,718,309 - 13,718,774NCBIRnor6.0
Rnor_6.05125,373,753 - 125,374,095NCBIRnor6.0
Rnor_5.01215,748,322 - 15,748,787UniSTSRnor5.0
Rnor_5.05129,231,146 - 129,231,488UniSTSRnor5.0
RGSC_v3.45126,881,790 - 126,882,132UniSTSRGSC3.4
RGSC_v3.41212,049,536 - 12,050,001UniSTSRGSC3.4
Celera1213,454,909 - 13,455,374UniSTS
Celera5119,421,841 - 119,422,183UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic Map5q34UniSTS
PMC125345P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,577 - 11,666,050 (+)MAPPERmRatBN7.2
mRatBN7.25120,658,748 - 120,659,098 (+)MAPPERmRatBN7.2
Rnor_6.05125,373,746 - 125,374,095NCBIRnor6.0
Rnor_6.01213,718,309 - 13,718,781NCBIRnor6.0
Rnor_5.01215,748,322 - 15,748,794UniSTSRnor5.0
Rnor_5.05129,231,139 - 129,231,488UniSTSRnor5.0
RGSC_v3.45126,881,783 - 126,882,132UniSTSRGSC3.4
RGSC_v3.41212,049,536 - 12,050,008UniSTSRGSC3.4
Celera1213,454,909 - 13,455,381UniSTS
Celera5119,421,834 - 119,422,183UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic Map5q34UniSTS
PMC133829P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,577 - 11,666,050 (+)MAPPERmRatBN7.2
mRatBN7.25120,658,748 - 120,659,098 (+)MAPPERmRatBN7.2
Rnor_6.05125,373,746 - 125,374,095NCBIRnor6.0
Rnor_6.01213,718,309 - 13,718,781NCBIRnor6.0
Rnor_5.01215,748,322 - 15,748,794UniSTSRnor5.0
Rnor_5.05129,231,139 - 129,231,488UniSTSRnor5.0
RGSC_v3.45126,881,783 - 126,882,132UniSTSRGSC3.4
RGSC_v3.41212,049,536 - 12,050,008UniSTSRGSC3.4
Celera1213,454,909 - 13,455,381UniSTS
Celera5119,421,834 - 119,422,183UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic Map5q34UniSTS
PMC240671P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25120,658,784 - 120,659,043 (+)MAPPERmRatBN7.2
mRatBN7.21211,665,632 - 11,666,014 (+)MAPPERmRatBN7.2
Rnor_6.01213,718,364 - 13,718,745NCBIRnor6.0
Rnor_6.05125,373,782 - 125,374,040NCBIRnor6.0
Rnor_5.01215,748,377 - 15,748,758UniSTSRnor5.0
Rnor_5.05129,231,175 - 129,231,433UniSTSRnor5.0
RGSC_v3.45126,881,819 - 126,882,077UniSTSRGSC3.4
RGSC_v3.41212,049,591 - 12,049,972UniSTSRGSC3.4
Celera1213,454,964 - 13,455,345UniSTS
Celera5119,421,870 - 119,422,128UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic Map5q34UniSTS
Actb-rs1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,660 - 11,666,072 (+)MAPPERmRatBN7.2
mRatBN7.25120,658,727 - 120,659,015 (+)MAPPERmRatBN7.2
Rnor_6.05125,373,725 - 125,374,012NCBIRnor6.0
Rnor_6.01213,718,392 - 13,718,803NCBIRnor6.0
Rnor_5.01215,748,405 - 15,748,816UniSTSRnor5.0
Rnor_5.05129,231,118 - 129,231,405UniSTSRnor5.0
RGSC_v3.45126,881,762 - 126,882,049UniSTSRGSC3.4
RGSC_v3.41212,049,619 - 12,050,030UniSTSRGSC3.4
Celera1213,454,992 - 13,455,403UniSTS
Celera5119,421,813 - 119,422,100UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic Map5q34UniSTS
PMC122623P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25120,658,789 - 120,658,908 (+)MAPPERmRatBN7.2
mRatBN7.21211,665,887 - 11,666,009 (+)MAPPERmRatBN7.2
Rnor_6.01213,718,619 - 13,718,740NCBIRnor6.0
Rnor_6.05125,373,787 - 125,373,905NCBIRnor6.0
Rnor_5.01215,748,632 - 15,748,753UniSTSRnor5.0
Rnor_5.05129,231,180 - 129,231,298UniSTSRnor5.0
RGSC_v3.45126,881,824 - 126,881,942UniSTSRGSC3.4
RGSC_v3.41212,049,846 - 12,049,967UniSTSRGSC3.4
Celera1213,455,219 - 13,455,340UniSTS
Celera5119,421,875 - 119,421,993UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic Map5q34UniSTS
PMC138011P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,360 - 11,666,006 (+)MAPPERmRatBN7.2
mRatBN7.25120,658,792 - 120,659,225 (+)MAPPERmRatBN7.2
Rnor_6.05125,373,790 - 125,374,222NCBIRnor6.0
Rnor_6.01213,718,092 - 13,718,737NCBIRnor6.0
Rnor_5.01215,748,105 - 15,748,750UniSTSRnor5.0
Rnor_5.05129,231,183 - 129,231,615UniSTSRnor5.0
RGSC_v3.45126,881,827 - 126,882,259UniSTSRGSC3.4
RGSC_v3.41212,049,319 - 12,049,964UniSTSRGSC3.4
Celera1213,454,692 - 13,455,337UniSTS
Celera5119,421,878 - 119,422,310UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic Map5q34UniSTS
PMC145386P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,582 - 11,666,047 (+)MAPPERmRatBN7.2
mRatBN7.25120,658,751 - 120,659,093 (+)MAPPERmRatBN7.2
Rnor_6.05125,373,749 - 125,374,090NCBIRnor6.0
Rnor_6.01213,718,314 - 13,718,778NCBIRnor6.0
Rnor_5.01215,748,327 - 15,748,791UniSTSRnor5.0
Rnor_5.05129,231,142 - 129,231,483UniSTSRnor5.0
RGSC_v3.45126,881,786 - 126,882,127UniSTSRGSC3.4
RGSC_v3.41212,049,541 - 12,050,005UniSTSRGSC3.4
Celera1213,454,914 - 13,455,378UniSTS
Celera5119,421,837 - 119,422,178UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic Map5q34UniSTS
PMC19354P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25120,658,752 - 120,659,095 (+)MAPPERmRatBN7.2
mRatBN7.21211,665,580 - 11,666,046 (+)MAPPERmRatBN7.2
Rnor_6.01213,718,312 - 13,718,777NCBIRnor6.0
Rnor_6.05125,373,750 - 125,374,092NCBIRnor6.0
Rnor_5.01215,748,325 - 15,748,790UniSTSRnor5.0
Rnor_5.05129,231,143 - 129,231,485UniSTSRnor5.0
RGSC_v3.45126,881,787 - 126,882,129UniSTSRGSC3.4
RGSC_v3.41212,049,539 - 12,050,004UniSTSRGSC3.4
Celera1213,454,912 - 13,455,377UniSTS
Celera5119,421,838 - 119,422,180UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic Map5q34UniSTS
mActb  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,666,024 - 11,666,464 (+)MAPPERmRatBN7.2
mRatBN7.25120,658,368 - 120,658,774 (+)MAPPERmRatBN7.2
Rnor_6.05125,373,366 - 125,373,771NCBIRnor6.0
Rnor_6.01213,718,756 - 13,719,194NCBIRnor6.0
Rnor_5.01215,748,769 - 15,749,207UniSTSRnor5.0
Rnor_5.05129,230,759 - 129,231,164UniSTSRnor5.0
RGSC_v3.45126,881,403 - 126,881,808UniSTSRGSC3.4
RGSC_v3.41212,049,983 - 12,050,421UniSTSRGSC3.4
Celera1213,455,356 - 13,455,794UniSTS
Celera5119,421,454 - 119,421,859UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic Map5q34UniSTS


Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JACYVU010000162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-40465 BioCyc
NCBI Gene 502977 ENTREZGENE
PhenoGen Actb-ps9 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Actb-ps9  actin, beta, pseudogene 9  LOC502977  similar to cytoplasmic beta-actin  Symbol and Name Changed 1299863 APPROVED
2006-11-19 LOC502977  similar to cytoplasmic beta-actin      Symbol and Name status set to provisional 70820 PROVISIONAL