Cdc20b (cell division cycle 20B) - Rat Genome Database

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Gene: Cdc20b (cell division cycle 20B) Rattus norvegicus
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Symbol: Cdc20b
Name: cell division cycle 20B
RGD ID: 1584143
Description: Orthologous to human CDC20B (cell division cycle 20B); INTERACTS WITH (+)-catechin (ortholog); 17beta-estradiol (ortholog); 2,3,7,8-tetrachlorodibenzodioxine (ortholog).
Type: protein-coding
Previously known as: cell division cycle protein 20 homolog B; LOC688823; similar to cell division cycle 20 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2244,688,349 - 44,738,056 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0244,916,806 - 44,947,860 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0263,953,314 - 64,002,072 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4244,435,662 - 44,484,469 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera240,462,676 - 40,511,461 (+)NCBICelera
Cytogenetic Map2q14NCBI



Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
deuterosome  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Cdc20b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2244,688,349 - 44,738,056 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0244,916,806 - 44,947,860 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0263,953,314 - 64,002,072 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4244,435,662 - 44,484,469 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera240,462,676 - 40,511,461 (+)NCBICelera
Cytogenetic Map2q14NCBI
CDC20B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38555,112,971 - 55,173,177 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl555,112,971 - 55,173,177 (-)Ensemblhg38GRCh38
GRCh37554,408,799 - 54,469,005 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36554,444,580 - 54,504,760 (-)NCBIBuild 36Build 36hg18NCBI36
Celera551,361,686 - 51,421,844 (-)NCBICelera
Cytogenetic Map5q11.2NCBI
HuRef551,381,983 - 51,442,171 (-)NCBIHuRef
CHM1_1554,412,293 - 54,472,491 (-)NCBICHM1_1
T2T-CHM13v2.0555,940,297 - 56,000,463 (-)NCBIT2T-CHM13v2.0
Cdc20b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913113,171,514 - 113,257,553 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13113,171,645 - 113,227,729 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm3813113,034,975 - 113,121,019 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13113,035,111 - 113,091,195 (+)Ensemblmm10GRCm38
MGSCv3713113,844,876 - 113,881,343 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3613114,175,546 - 114,212,013 (+)NCBIMGSCv36mm8
Celera13117,372,711 - 117,401,874 (+)NCBICelera
Cytogenetic Map13D2.2NCBI
cM Map1363.93NCBI
Cdc20b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544612,494,735 - 12,553,130 (+)Ensembl
ChiLan1.0NW_00495544612,494,176 - 12,551,397 (+)NCBIChiLan1.0ChiLan1.0
CDC20B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2458,767,265 - 58,829,371 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1556,920,913 - 56,982,996 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0558,856,370 - 58,918,463 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1560,478,977 - 60,538,264 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl560,478,977 - 60,538,264 (+)EnsemblpanPan2panpan1.1
CDC20B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1242,501,365 - 42,547,336 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl242,502,471 - 42,544,841 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha239,546,989 - 39,592,913 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0242,960,120 - 43,009,376 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl242,961,226 - 43,028,045 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1240,030,611 - 40,072,137 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0240,840,823 - 40,889,769 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0241,663,376 - 41,712,698 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cdc20b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213203,656,675 - 203,704,624 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648012,593,216 - 12,640,661 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493648012,593,216 - 12,640,661 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDC20B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1634,294,272 - 34,349,242 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11634,294,486 - 34,354,588 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CDC20B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1451,349,486 - 51,408,437 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl451,351,574 - 51,406,488 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666049219,601 - 275,784 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdc20b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247594,109,203 - 4,176,824 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247594,112,012 - 4,174,838 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Cdc20b
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v13183,689,003 - 183,764,027 (-)NCBIRrattus_CSIRO_v1

Markers in Region
BF418059  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28122,026,222 - 122,026,354 (+)MAPPERmRatBN7.2
mRatBN7.2244,694,329 - 44,694,461 (+)MAPPERmRatBN7.2
Rnor_6.0244,922,786 - 44,922,917NCBIRnor6.0
Rnor_6.08131,001,224 - 131,001,355NCBIRnor6.0
Rnor_5.08130,164,553 - 130,164,684UniSTSRnor5.0
Rnor_5.0263,959,190 - 63,959,321UniSTSRnor5.0
RGSC_v3.4244,441,588 - 44,441,719UniSTSRGSC3.4
RGSC_v3.48122,174,817 - 122,174,948UniSTSRGSC3.4
Celera8121,147,228 - 121,147,359UniSTS
Celera240,468,688 - 40,468,819UniSTS
RH 3.4 Map2281.2UniSTS
Cytogenetic Map2q14UniSTS


Expression

RNA-SEQ Expression

hemolymphoid system
mesenchyme
mesoderm
renal system
2 4 2 2

Sequence


RefSeq Acc Id: XM_039103894   ⟹   XP_038959822
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2244,688,349 - 44,738,056 (+)NCBI

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1584143 AgrOrtholog
BioCyc Gene G2FUF-54376 BioCyc
NCBI Gene 688823 ENTREZGENE
PhenoGen Cdc20b PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-21 Cdc20b  cell division cycle 20B  LOC688823  similar to cell division cycle 20 homolog  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC688823  similar to cell division cycle 20 homolog  LOC686640  similar to cell division cycle 20 homolog  Data merged from RGD:1595008 1643240 APPROVED
2006-11-20 LOC686640  similar to cell division cycle 20 homolog      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC688823  similar to cell division cycle 20 homolog      Symbol and Name status set to provisional 70820 PROVISIONAL