Cox6b1 (cytochrome c oxidase subunit 6B1) - Rat Genome Database

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Gene: Cox6b1 (cytochrome c oxidase subunit 6B1) Rattus norvegicus
Analyze
Symbol: Cox6b1 (Ensembl: LOC120103152)
Name: cytochrome c oxidase subunit 6B1 (Ensembl:cytochrome c oxidase subunit 6B1-like)
RGD ID: 1584097
Description: Predicted to be involved in substantia nigra development. Predicted to be located in mitochondrial membrane. Predicted to be part of respiratory chain complex IV. Predicted to be active in mitochondrial inner membrane. Human ortholog(s) of this gene implicated in mitochondrial complex IV deficiency nuclear type 7. Orthologous to human COX6B1 (cytochrome c oxidase subunit 6B1); PARTICIPATES IN Alzheimer's disease pathway; Huntington's disease pathway; oxidative phosphorylation pathway; INTERACTS WITH 3H-1,2-dithiole-3-thione; 4,4'-sulfonyldiphenol; ampicillin.
Type: protein-coding (Ensembl: processed_pseudogene)
RefSeq Status: PROVISIONAL
Previously known as: COX VIb-1; Cox6b; cytochrome c oxidase subunit VIb; cytochrome c oxidase subunit VIb polypeptide 1; cytochrome c oxidase, subunit VIb polypeptide 1; LOC688869; similar to cytochrome c oxidase, subunit VIb polypeptide 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Cox6b1-ps1  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8195,002,513 - 95,011,516 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl195,001,707 - 95,011,431 (-)EnsemblGRCr8
GRCr8 Ensembl574,441,679 - 74,441,972 (+)EnsemblGRCr8
mRatBN7.2185,875,080 - 85,884,081 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl569,646,379 - 69,646,672 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl2196,169,217 - 196,184,807 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl185,875,109 - 85,884,001 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx191,291,647 - 91,298,770 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0199,757,820 - 99,764,941 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0193,049,937 - 93,057,059 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0189,075,987 - 89,084,834 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl189,075,975 - 89,084,859 (-)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl2211,337,271 - 211,337,531 (+)Ensemblrn6Rnor6.0
Rnor_5.0190,230,830 - 90,240,520 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4185,669,891 - 85,677,195 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera180,246,804 - 80,254,197 (-)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-dexrazoxane  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-diaminobutyric acid  (ISO)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
5-Hydroxythalidomide  (ISO)
ampicillin  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
astaxanthin  (ISO)
azoxystrobin  (ISO)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
Brodifacoum  (EXP)
cadmium dichloride  (ISO)
captan  (ISO)
CGP 52608  (ISO)
chloropicrin  (ISO)
cisplatin  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
corosolic acid  (ISO)
cyclosporin A  (ISO)
doxorubicin  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
folic acid  (ISO)
folpet  (ISO)
gentamycin  (EXP)
hydralazine  (ISO)
isoniazide  (ISO)
ivermectin  (ISO)
maneb  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
melatonin  (ISO)
methidathion  (ISO)
methotrexate  (ISO)
methylparaben  (ISO)
metronidazole  (EXP)
neomycin  (EXP)
nitrates  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
picoxystrobin  (ISO)
pirinixic acid  (ISO)
progesterone  (ISO)
pyrimidifen  (ISO)
pyrogallol  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
sodium arsenite  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
thapsigargin  (ISO)
titanium dioxide  (ISO)
toluene  (EXP)
triphenyl phosphate  (ISO)
tungsten  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vancomycin  (EXP)
vincaleukoblastine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12865426   PMID:14651853   PMID:18614015   PMID:22926577   PMID:30030519   PMID:30311029   PMID:31059068   PMID:31505169   PMID:35352799  


Genomics

Comparative Map Data
Cox6b1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8195,002,513 - 95,011,516 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl195,001,707 - 95,011,431 (-)EnsemblGRCr8
GRCr8 Ensembl574,441,679 - 74,441,972 (+)EnsemblGRCr8
mRatBN7.2185,875,080 - 85,884,081 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl569,646,379 - 69,646,672 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl2196,169,217 - 196,184,807 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl185,875,109 - 85,884,001 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx191,291,647 - 91,298,770 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0199,757,820 - 99,764,941 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0193,049,937 - 93,057,059 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0189,075,987 - 89,084,834 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl189,075,975 - 89,084,859 (-)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl2211,337,271 - 211,337,531 (+)Ensemblrn6Rnor6.0
Rnor_5.0190,230,830 - 90,240,520 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4185,669,891 - 85,677,195 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera180,246,804 - 80,254,197 (-)NCBICelera
Cytogenetic Map1q21NCBI
COX6B1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381935,648,323 - 35,658,782 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1935,648,323 - 35,658,782 (+)Ensemblhg38GRCh38
GRCh371936,139,225 - 36,149,684 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361940,830,995 - 40,841,524 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341940,830,994 - 40,841,523NCBI
Celera1932,852,598 - 32,863,159 (+)NCBICelera
Cytogenetic Map19q13.12NCBI
HuRef1932,644,378 - 32,654,939 (+)NCBIHuRef
CHM1_11936,140,657 - 36,151,217 (+)NCBICHM1_1
T2T-CHM13v2.01938,193,302 - 38,203,762 (+)NCBIT2T-CHM13v2.0
Cox6b1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39730,316,396 - 30,325,539 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl730,316,286 - 30,325,576 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38730,616,971 - 30,626,114 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl730,616,861 - 30,626,151 (-)Ensemblmm10GRCm38
MGSCv37731,401,993 - 31,411,170 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36730,325,734 - 30,334,911 (-)NCBIMGSCv36mm8
MGSCv36722,894,581 - 22,903,778 (-)NCBIMGSCv36mm8
Celera725,208,771 - 25,217,172 (-)NCBICelera
Cytogenetic Map7B1NCBI
cM Map718.84NCBI
LOC102025227
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554682,884,958 - 2,891,988 (-)Ensembl
ChiLan1.0NW_0049554682,884,958 - 2,891,952 (-)NCBIChiLan1.0ChiLan1.0
LOC100972703
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22041,644,489 - 41,655,044 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11943,627,947 - 43,638,506 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01932,578,126 - 32,588,684 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11941,314,020 - 41,324,489 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1941,314,020 - 41,324,489 (+)EnsemblpanPan2panpan1.1
LOC612644
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11116,960,851 - 116,969,415 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1116,366,059 - 116,374,616 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01117,564,045 - 117,572,630 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.11117,127,088 - 117,135,659 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01116,750,997 - 116,759,548 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01117,806,857 - 117,815,447 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
LOC101972214
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344133,636,614 - 133,637,083 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936543399,447 - 399,911 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COX6B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl645,091,895 - 45,102,669 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1645,091,829 - 45,102,785 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2640,548,689 - 40,559,158 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103242353
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1167,611,114 - 7,611,617 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605913,789,217 - 13,789,641 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101697786
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247949,961,643 - 9,971,948 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247949,962,206 - 9,970,501 (+)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Cox6b1
25 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:77
Count of miRNA genes:65
Interacting mature miRNAs:67
Transcripts:ENSRNOT00000032026
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)151940904101229020Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)187889942132889942Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
2300324Fetw1Fetal weight QTL 112.10.005fetal growth trait (VT:0004201)fetal body weight (CMO:0002080)192963855109494029Rat
1331800Scl25Serum cholesterol level QTL 253.013blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)187785026142582336Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183019780128019780Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)166404680111404680Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
631512Scl6Serum cholesterol level QTL 69.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)18126986099645535Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
631519Pia11Pristane induced arthritis QTL 115.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)193903998191260518Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)166400974132889942Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)184107164115183752Rat
2313083Bmd74Bone mineral density QTL 7440.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)191302413136302413Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16540563796805205Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)186622262131622262Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)158769992103769992Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)166077886111077886Rat
738022Anxrr13Anxiety related response QTL 134.60.00039locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of, or within a discrete space in an open field apparatus (CMO:0001514)192683681137683681Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)152891222109116986Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)186993904131993904Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)187558587132558587Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)192683681137683681Rat

Markers in Region
Cox6b1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22196,182,894 - 196,183,120 (+)MAPPERmRatBN7.2
Rnor_6.02211,337,303 - 211,337,528NCBIRnor6.0
Rnor_5.02230,807,098 - 230,807,323UniSTSRnor5.0
Celera568,513,392 - 68,513,617UniSTS
Celera2188,828,786 - 188,829,011UniSTS
Cytogenetic Map2q34UniSTS
Cytogenetic Map1q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
25 23 116 270 175 173 111 117 111 12 562 289 11 229 121 150 62 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001145273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006228795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC141526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000032026   ⟹   ENSRNOP00000030997
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl195,001,707 - 95,011,431 (-)Ensembl
mRatBN7.2 Ensembl185,875,109 - 85,884,001 (-)Ensembl
Rnor_6.0 Ensembl189,075,975 - 89,084,859 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000045155   ⟹   ENSRNOP00000048723
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl569,646,379 - 69,646,672 (+)Ensembl
Rnor_6.0 Ensembl2211,337,271 - 211,337,531 (+)Ensembl
RefSeq Acc Id: NM_001145273   ⟹   NP_001138745
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8195,002,513 - 95,009,852 (-)NCBI
mRatBN7.2185,875,080 - 85,882,420 (-)NCBI
Rnor_6.0189,075,987 - 89,083,217 (-)NCBI
Rnor_5.0190,230,830 - 90,240,520 (-)NCBI
RGSC_v3.4185,669,891 - 85,677,195 (-)RGD
Celera180,246,804 - 80,254,197 (-)RGD
Sequence:
RefSeq Acc Id: XM_006228795   ⟹   XP_006228857
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8195,002,545 - 95,011,516 (-)NCBI
mRatBN7.2185,875,109 - 85,884,080 (-)NCBI
Rnor_6.0189,076,016 - 89,084,834 (-)NCBI
Rnor_5.0190,230,830 - 90,240,520 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039091217   ⟹   XP_038947145
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8195,002,545 - 95,011,512 (-)NCBI
mRatBN7.2185,875,109 - 85,884,081 (-)NCBI
RefSeq Acc Id: XM_063274412   ⟹   XP_063130482
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8195,002,545 - 95,011,428 (-)NCBI
RefSeq Acc Id: XM_063274418   ⟹   XP_063130488
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8195,002,545 - 95,011,428 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001138745 (Get FASTA)   NCBI Sequence Viewer  
  XP_006228857 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947145 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130482 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130488 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000030997
GenBank Protein P80430 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001138745   ⟸   NM_001145273
- UniProtKB: A0A8I6A8X0 (UniProtKB/TrEMBL),   A6JA04 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006228857   ⟸   XM_006228795
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A8X0 (UniProtKB/TrEMBL),   A6JA04 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000048723   ⟸   ENSRNOT00000045155
Ensembl Acc Id: ENSRNOP00000030997   ⟸   ENSRNOT00000032026
RefSeq Acc Id: XP_038947145   ⟸   XM_039091217
- Peptide Label: isoform X2
- UniProtKB: D3ZSB0 (UniProtKB/TrEMBL),   A6JA04 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130482   ⟸   XM_063274412
- Peptide Label: isoform X1
- UniProtKB: A6JA04 (UniProtKB/TrEMBL),   A0A8I6A8X0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130488   ⟸   XM_063274418
- Peptide Label: isoform X2
- UniProtKB: A6JA04 (UniProtKB/TrEMBL),   D3ZSB0 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZD09-F1-model_v2 AlphaFold D3ZD09 1-86 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1584097 AgrOrtholog
BioCyc Gene G2FUF-60089 BioCyc
BioCyc Pathway PWY-3781 [aerobic respiration I (cytochrome c)] BioCyc
  PWY-7279 [aerobic respiration II (cytochrome c) (yeast)] BioCyc
BioCyc Pathway Image PWY-3781 BioCyc
  PWY-7279 BioCyc
Ensembl Genes ENSRNOG00000024309 Ensembl, ENTREZGENE
  ENSRNOG00000034161 Ensembl
  ENSRNOG00000066942 Ensembl
Ensembl Transcript ENSRNOT00000032026 ENTREZGENE
NCBI Gene 688869 ENTREZGENE
PhenoGen Cox6b1 PhenoGen
RatGTEx ENSRNOG00000024309 RatGTEx
  ENSRNOG00000034161 RatGTEx
  ENSRNOG00000066942 RatGTEx
UniProt A0A8I6A8X0 ENTREZGENE, UniProtKB/TrEMBL
  A6JA04 ENTREZGENE, UniProtKB/TrEMBL
  CX6B1_RAT UniProtKB/Swiss-Prot
  D3ZSB0 ENTREZGENE, UniProtKB/TrEMBL
  P80430 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-10-26 Cox6b1  cytochrome c oxidase subunit 6B1  Cox6b1  cytochrome c oxidase subunit VIb polypeptide 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-02-17 Cox6b1  cytochrome c oxidase subunit VIb polypeptide 1  LOC688869  similar to cytochrome c oxidase, subunit VIb polypeptide 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-19 LOC688869  similar to cytochrome c oxidase, subunit VIb polypeptide 1      Symbol and Name status set to provisional 70820 PROVISIONAL