LOC681129 (triosephosphate isomerase 1 pseudogene) - Rat Genome Database

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Gene: LOC681129 (triosephosphate isomerase 1 pseudogene) Rattus norvegicus
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Symbol: LOC681129
Name: triosephosphate isomerase 1 pseudogene
RGD ID: 1583562
Description:
Type: pseudo
RefSeq Status: INFERRED
Related Functional Gene: Tpi1  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81135,532,350 - 35,533,262 (+)NCBIGRCr8
mRatBN7.21122,045,865 - 22,046,777 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx1130,704,931 - 30,705,843 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01123,405,374 - 23,406,286 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01122,594,000 - 22,594,912 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01122,251,081 - 22,251,993 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01125,891,006 - 25,891,829 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41122,427,640 - 22,432,794 (+)ENTREZGENERGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1121,921,618 - 21,922,530 (+)NCBICelera
Cytogenetic Map11q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

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Variants in LOC681129
7 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11135331169Rat
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11843667453436674Rat
2290451Scl58Serum cholesterol level QTL 583.48blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)111283104625121472Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)111647204744285911Rat
1600394Edcs1Endometrial carcinoma susceptibility QTL12.90.04uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)111897620824697116Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat


Expression


Sequence



Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-22106 BioCyc
NCBI Gene 681129 ENTREZGENE
PhenoGen LOC681129 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-11-19 LOC681129  triosephosphate isomerase 1 pseudogene      Symbol and Name status set to provisional 70820 PROVISIONAL