Thsd7a (thrombospondin type 1 domain containing 7A) - Rat Genome Database

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Gene: Thsd7a (thrombospondin type 1 domain containing 7A) Rattus norvegicus
Analyze
Symbol: Thsd7a
Name: thrombospondin type 1 domain containing 7A
RGD ID: 1566201
Description: Predicted to be involved in actin cytoskeleton organization. Predicted to be located in podocyte foot. Predicted to be active in plasma membrane. Orthologous to human THSD7A (thrombospondin type 1 domain containing 7A); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: INFERRED
Previously known as: LOC500032; RGD1566201; similar to mKIAA0960 protein; thrombospondin type-1 domain-containing protein 7A; thrombospondin, type I, domain containing 7A
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8441,427,276 - 41,865,524 (-)NCBIGRCr8
mRatBN7.2440,461,124 - 40,899,345 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl440,460,814 - 40,899,583 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx445,419,542 - 45,860,696 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0441,345,675 - 41,786,802 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0439,749,295 - 40,190,421 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0438,658,512 - 39,103,411 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl438,664,066 - 39,102,807 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0438,500,796 - 38,938,890 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4437,617,357 - 38,060,371 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera435,850,758 - 36,285,135 (-)NCBICelera
Cytogenetic Map4q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2-palmitoylglycerol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
benzo[e]pyrene  (ISO)
beryllium sulfate  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
chrysene  (ISO)
cobalt dichloride  (ISO)
CU-O LINKAGE  (ISO)
cyclosporin A  (ISO)
D-glucose  (ISO)
DDT  (EXP)
dorsomorphin  (ISO)
elemental selenium  (ISO)
entinostat  (ISO)
flutamide  (EXP)
folic acid  (ISO)
fucoxanthin  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
glucose  (ISO)
inulin  (ISO)
mercury dibromide  (ISO)
methapyrilene  (ISO)
methimazole  (EXP)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
N,N-diethyl-m-toluamide  (EXP)
O-methyleugenol  (ISO)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (EXP)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
permethrin  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
progesterone  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sunitinib  (ISO)
tetrachloromethane  (ISO)
tetraphene  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
trimellitic anhydride  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
plasma membrane  (IBA,ISO)
podocyte foot  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:23376485   PMID:27214550   PMID:34876395  


Genomics

Comparative Map Data
Thsd7a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8441,427,276 - 41,865,524 (-)NCBIGRCr8
mRatBN7.2440,461,124 - 40,899,345 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl440,460,814 - 40,899,583 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx445,419,542 - 45,860,696 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0441,345,675 - 41,786,802 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0439,749,295 - 40,190,421 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0438,658,512 - 39,103,411 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl438,664,066 - 39,102,807 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0438,500,796 - 38,938,890 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4437,617,357 - 38,060,371 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera435,850,758 - 36,285,135 (-)NCBICelera
Cytogenetic Map4q21NCBI
THSD7A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38711,370,365 - 11,832,198 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl711,370,365 - 11,832,198 (-)EnsemblGRCh38hg38GRCh38
GRCh37711,409,992 - 11,871,824 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36711,380,695 - 11,838,349 (-)NCBINCBI36Build 36hg18NCBI36
Celera711,384,846 - 11,846,544 (-)NCBICelera
Cytogenetic Map7p21.3NCBI
HuRef711,268,321 - 11,729,851 (-)NCBIHuRef
CHM1_1711,410,667 - 11,872,448 (-)NCBICHM1_1
T2T-CHM13v2.0711,501,328 - 11,963,096 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2711,463,461 - 11,925,090 (-)NCBI
Thsd7a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39612,311,607 - 12,749,252 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl612,311,609 - 12,749,409 (-)EnsemblGRCm39 Ensembl
GRCm38612,311,608 - 12,749,253 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl612,311,610 - 12,749,410 (-)EnsemblGRCm38mm10GRCm38
MGSCv37612,261,608 - 12,699,253 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36612,266,188 - 12,369,363 (-)NCBIMGSCv36mm8
Celera612,410,903 - 12,846,978 (-)NCBICelera
Cytogenetic Map6A1NCBI
cM Map65.31NCBI
Thsd7a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543217,901,693 - 18,111,901 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543217,896,273 - 18,111,903 (-)NCBIChiLan1.0ChiLan1.0
THSD7A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2616,200,112 - 16,675,029 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1764,524,829 - 64,999,740 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0712,024,080 - 12,498,856 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1711,370,715 - 11,843,379 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl711,376,048 - 11,652,504 (-)Ensemblpanpan1.1panPan2
THSD7A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11426,344,342 - 26,769,727 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1426,349,465 - 26,769,457 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1425,860,426 - 26,285,019 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01426,151,271 - 26,576,848 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1426,156,399 - 26,576,605 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11426,320,825 - 26,748,226 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01426,054,356 - 26,479,356 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01426,303,891 - 26,732,300 (-)NCBIUU_Cfam_GSD_1.0
Thsd7a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511839,824,019 - 40,542,413 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936761948,564 - 1,180,351 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936761947,445 - 1,336,541 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
THSD7A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl981,076,091 - 81,518,344 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1981,071,840 - 81,518,200 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2989,069,461 - 89,309,422 (-)NCBISscrofa10.2Sscrofa10.2susScr3
THSD7A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12146,312,799 - 46,802,002 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2146,518,101 - 46,796,607 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604257,645,679 - 58,139,124 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Thsd7a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248277,620,672 - 7,896,923 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248277,444,535 - 7,898,557 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Thsd7a
3059 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:90
Count of miRNA genes:77
Interacting mature miRNAs:79
Transcripts:ENSRNOT00000052063
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829457114705Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41467806559678065Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)44043338885433388Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41008408955084089Rat
8655949Rf62Renal function QTL 6222blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)43443011944463908Rat
1331807Rf31Renal function QTL 312.988urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)43952426474726312Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41008408955084089Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521917856647776Rat
6478769Anxrr48Anxiety related response QTL 480.02514locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)41008408955084089Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41081417091360527Rat
634323Hc2Hypercalciuria QTL 22.15urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)421079645210796Rat
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)41793350862933508Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)436303261103194984Rat
631209Bw2Body weight QTL24.2retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)4994088544463908Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)42690728575585128Rat
8694374Bw155Body weight QTL 1553.390.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)41008408955084089Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
8552801Bw143Body weight QTL 1437.3body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)43443048482490359Rat
61475Aia2Adjuvant induced arthritis QTL 25.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)43950527573892441Rat
8694439Bw168Body weight QTL 1689.570.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)44043341485433414Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)42133334362278020Rat
2290374Gluco32Glucose level QTL 326.27blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43717795044463908Rat
6478724Anxrr35Anxiety related response QTL 350.00449defecation behavior trait (VT:0010462)defecation measurement (CMO:0000997)41008408955084089Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)42949419581006281Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4521460278882945Rat
6909122Insul22Insulin level QTL 224.63blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)42690728575585128Rat
8552809Vie5Viral induced encephalitis QTL 525.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
4889511Gluco61Glucose level QTL 614.70.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43717795040869000Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829465958103Rat
9590304Scort17Serum corticosterone level QTL 174.960.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)41008408955084089Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)439524264116179656Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)432583980114627242Rat
11530004Niddm71Non-insulin dependent diabetes mellitus QTL 710.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43258419952754138Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1354665Stl10Serum triglyceride level QTL 103.57blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)42133334344463908Rat

Markers in Region
D4Rat152  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2440,780,098 - 40,780,283 (+)MAPPERmRatBN7.2
Rnor_6.0438,984,095 - 38,984,279NCBIRnor6.0
Rnor_5.0438,819,784 - 38,819,968UniSTSRnor5.0
RGSC_v3.4437,940,387 - 37,940,784RGDRGSC3.4
RGSC_v3.4437,940,574 - 37,940,758UniSTSRGSC3.4
RGSC_v3.1438,058,927 - 38,059,324RGD
Celera436,165,944 - 36,166,128UniSTS
RH 3.4 Map4227.6RGD
RH 3.4 Map4227.6UniSTS
RH 2.0 Map4307.2RGD
SHRSP x BN Map424.95RGD
Cytogenetic Map4q21UniSTS
D4Rat282  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2440,868,752 - 40,869,000 (+)MAPPERmRatBN7.2
Rnor_6.0439,073,031 - 39,073,276NCBIRnor6.0
Rnor_5.0438,909,114 - 38,909,359UniSTSRnor5.0
RGSC_v3.4438,029,742 - 38,029,988RGDRGSC3.4
RGSC_v3.4438,029,743 - 38,029,988UniSTSRGSC3.4
RGSC_v3.1438,148,282 - 38,148,528RGD
Celera436,254,630 - 36,254,875UniSTS
FHH x ACI Map423.1799RGD
FHH x ACI Map423.1799UniSTS
Cytogenetic Map4q21UniSTS
BE120568  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2440,762,254 - 40,762,405 (+)MAPPERmRatBN7.2
Rnor_6.0438,966,271 - 38,966,421NCBIRnor6.0
Rnor_5.0438,801,777 - 38,801,927UniSTSRnor5.0
RGSC_v3.4437,922,503 - 37,922,653UniSTSRGSC3.4
Celera436,148,394 - 36,148,544UniSTS
RH 3.4 Map4233.6UniSTS
Cytogenetic Map4q21UniSTS
BF399548  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2440,630,494 - 40,630,695 (+)MAPPERmRatBN7.2
Rnor_6.0438,834,585 - 38,834,785NCBIRnor6.0
Rnor_5.0438,670,281 - 38,670,481UniSTSRnor5.0
RGSC_v3.4437,789,183 - 37,789,383UniSTSRGSC3.4
Celera436,016,644 - 36,016,844UniSTS
RH 3.4 Map4222.7UniSTS
Cytogenetic Map4q21UniSTS
AU047130  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2440,850,579 - 40,850,773 (+)MAPPERmRatBN7.2
Rnor_6.0439,054,551 - 39,054,746NCBIRnor6.0
Rnor_5.0438,890,240 - 38,890,435UniSTSRnor5.0
RGSC_v3.4438,011,055 - 38,011,250UniSTSRGSC3.4
Celera436,236,444 - 36,236,639UniSTS
Cytogenetic Map4q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000052063   ⟹   ENSRNOP00000040000
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl440,460,814 - 40,899,583 (-)Ensembl
Rnor_6.0 Ensembl438,664,066 - 39,102,807 (-)Ensembl
RefSeq Acc Id: NM_001191970   ⟹   NP_001178899
RefSeq Status: INFERRED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8441,427,276 - 41,865,524 (-)NCBI
mRatBN7.2440,461,124 - 40,899,345 (-)NCBI
Rnor_6.0438,664,066 - 39,102,807 (-)NCBI
Rnor_5.0438,500,796 - 38,938,890 (-)NCBI
Celera435,850,758 - 36,285,135 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001178899 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000040000.6
RefSeq Acc Id: NP_001178899   ⟸   NM_001191970
- Peptide Label: precursor
- UniProtKB: F1MA97 (UniProtKB/TrEMBL),   A6IDZ3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000040000   ⟸   ENSRNOT00000052063
Protein Domains
Spondin-like TSP1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1MA97-F1-model_v2 AlphaFold F1MA97 1-1643 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1566201 AgrOrtholog
BioCyc Gene G2FUF-45626 BioCyc
Ensembl Genes ENSRNOG00000030151 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000052063.6 UniProtKB/TrEMBL
Gene3D-CATH 2.20.100.10 UniProtKB/TrEMBL
InterPro Spondin/Thrombospondin_T1 UniProtKB/TrEMBL
  Thrombospondin_1_rpt UniProtKB/TrEMBL
  TSP1_rpt_sf UniProtKB/TrEMBL
  TSP1_spondin_dom UniProtKB/TrEMBL
NCBI Gene 500032 ENTREZGENE
PANTHER SPONDIN UniProtKB/TrEMBL
  TSP1_SPONDIN DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam TSP1_ADAMTS UniProtKB/TrEMBL
  TSP1_spondin UniProtKB/TrEMBL
  TSP_1 UniProtKB/TrEMBL
PhenoGen Thsd7a PhenoGen
PROSITE TSP1 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000030151 RatGTEx
SMART TSP1 UniProtKB/TrEMBL
Superfamily-SCOP TSP1 UniProtKB/TrEMBL
UniProt A6IDZ3 ENTREZGENE, UniProtKB/TrEMBL
  F1MA97 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-20 Thsd7a  thrombospondin type 1 domain containing 7A  Thsd7a  thrombospondin, type I, domain containing 7A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Thsd7a  thrombospondin, type I, domain containing 7A  RGD1566201_predicted  similar to mKIAA0960 protein (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1566201_predicted  similar to mKIAA0960 protein (predicted)  LOC500032  similar to mKIAA0960 protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC500032  similar to mKIAA0960 protein      Symbol and Name status set to provisional 70820 PROVISIONAL