Trim58 (tripartite motif-containing 58) - Rat Genome Database

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Gene: Trim58 (tripartite motif-containing 58) Rattus norvegicus
Analyze
Symbol: Trim58
Name: tripartite motif-containing 58
RGD ID: 1566174
Description: Predicted to enable several functions, including dynein heavy chain binding activity; dynein intermediate chain binding activity; and protein homodimerization activity. Predicted to be involved in several processes, including positive regulation of canonical NF-kappaB signal transduction; positive regulation of erythrocyte enucleation; and protein ubiquitination. Predicted to be active in cytosol and nucleoplasm. Orthologous to human TRIM58 (tripartite motif containing 58); INTERACTS WITH 2,3,7,8-Tetrachlorodibenzofuran; atrazine; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: E3 ubiquitin-protein ligase TRIM58; LOC303167; RGD1566174; tripartite motif-containing protein 58
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81043,523,341 - 43,536,435 (+)NCBIGRCr8
mRatBN7.21043,022,933 - 43,038,984 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1043,022,996 - 43,034,476 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1047,685,505 - 47,696,506 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01047,175,948 - 47,186,946 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01042,679,446 - 42,690,450 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01044,271,587 - 44,282,726 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1044,271,587 - 44,282,726 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01044,076,388 - 44,087,527 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41044,504,886 - 44,515,900 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1042,308,739 - 42,319,736 (+)NCBICelera
Cytogenetic Map10q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:25241935  


Genomics

Comparative Map Data
Trim58
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81043,523,341 - 43,536,435 (+)NCBIGRCr8
mRatBN7.21043,022,933 - 43,038,984 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1043,022,996 - 43,034,476 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1047,685,505 - 47,696,506 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01047,175,948 - 47,186,946 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01042,679,446 - 42,690,450 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01044,271,587 - 44,282,726 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1044,271,587 - 44,282,726 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01044,076,388 - 44,087,527 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41044,504,886 - 44,515,900 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1042,308,739 - 42,319,736 (+)NCBICelera
Cytogenetic Map10q22NCBI
TRIM58
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381247,857,187 - 247,880,138 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1247,857,187 - 247,880,138 (+)EnsemblGRCh38hg38GRCh38
GRCh371248,020,489 - 248,043,440 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361246,087,124 - 246,110,063 (+)NCBINCBI36Build 36hg18NCBI36
Build 341244,346,541 - 244,366,917NCBI
Celera1221,312,583 - 221,335,224 (+)NCBICelera
Cytogenetic Map1q44NCBI
HuRef1218,409,229 - 218,432,897 (+)NCBIHuRef
CHM1_11249,292,796 - 249,315,666 (+)NCBICHM1_1
T2T-CHM13v2.01247,288,019 - 247,311,943 (+)NCBIT2T-CHM13v2.0
Trim58
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391158,531,232 - 58,543,277 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1158,531,291 - 58,543,230 (+)EnsemblGRCm39 Ensembl
GRCm381158,640,465 - 58,652,404 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1158,640,465 - 58,652,404 (+)EnsemblGRCm38mm10GRCm38
MGSCv371158,453,967 - 58,465,906 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361158,456,660 - 58,468,599 (+)NCBIMGSCv36mm8
MGSCv361159,161,114 - 59,172,381 (+)NCBIMGSCv36mm8
Celera1163,390,965 - 63,397,420 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1136.23NCBI
Trim58
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955613231,144 - 241,668 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955613229,567 - 243,019 (+)NCBIChiLan1.0ChiLan1.0
LOC129392906
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v211,130,200 - 1,191,137 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111,407,306 - 1,468,264 (-)NCBINHGRI_mPanPan1
TRIM58
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1141,582,244 - 1,599,482 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl141,576,272 - 1,598,487 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha141,219,288 - 1,238,480 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0141,300,759 - 1,319,951 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl141,304,244 - 1,319,871 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1141,485,747 - 1,505,115 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0141,271,945 - 1,291,137 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0141,260,175 - 1,279,371 (-)NCBIUU_Cfam_GSD_1.0
TRIM58
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl255,821,915 - 55,860,382 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1255,822,361 - 55,843,923 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2256,435,682 - 56,475,699 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRIM58
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12584,839,882 - 84,875,608 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605587,269,659 - 87,289,659 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Trim58
414 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:107
Count of miRNA genes:99
Interacting mature miRNAs:103
Transcripts:ENSRNOT00000047700
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61441Btemp1Thermal response to stress QTL 14body temperature trait (VT:0005535)core body temperature (CMO:0001036)103539245763642539Rat
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat
1578779Tcas10Tongue tumor susceptibility QTL 103.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)103129743976297439Rat
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101527595560275955Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
631552Vetf2Vascular elastic tissue fragility QTL 24.50.0002aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)104114263386142633Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
631557Bp136Blood pressure QTL 1360.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)103063205375632053Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
61332Eau3Experimental allergic uveoretinitis QTL 30.004uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)103449055945579777Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
61463Bp12Blood pressure QTL 126.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104133325886333258Rat
1554317Bmd4Bone mineral density QTL 49.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)101981604299406971Rat
1598852Anxrr19Anxiety related response QTL 195.07body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)101816784163167841Rat
1581497Esta1Estrogen-induced thymic atrophy QTL 1thymus mass (VT:0004954)thymus wet weight (CMO:0000855)102132980561345413Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
724527Bp148Blood pressure QTL 1480.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102845313673453136Rat
1358897Stresp6Stress response QTL 64.170.022blood norepinephrine amount (VT:0005663)plasma norepinephrine level (CMO:0001010)103539226764155584Rat
1331762Rf40Renal function QTL 403.873kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)102929950464155584Rat
2300171Bmd58Bone mineral density QTL 584.90.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)102694462871944628Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)14232313287323132Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
9590310Scort19Serum corticosterone level QTL 196.30.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
10402859Bp381Blood pressure QTL 3810.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
70198BpQTLcluster9Blood pressure QTL cluster 92.94arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)104232313287323132Rat
6893352Bw100Body weight QTL 1000.330.6body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102242750090627625Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10538701450387014Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
1354587Kidm21Kidney mass QTL 213.3kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)101502851360430477Rat
6893350Bw99Body weight QTL 990.870.16body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
2317043Aia7Adjuvant induced arthritis QTL 73.82joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)103756507982565079Rat
70224Eae3Experimental allergic encephalomyelitis QTL 34.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)102652195761345413Rat
2317042Aia20Adjuvant induced arthritis QTL 203.38joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)103756507982565079Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
2313087Bmd80Bone mineral density QTL 803.20.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)101960648364606483Rat
1354614Hpcl1Hepatic cholesterol level QTL 13.3liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)103539226751793994Rat
631532Cm50Cardiac mass QTL 506.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)101790711351786432Rat
1576319Cia29Collagen induced arthritis QTL 29joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103397392178973921Rat
8552805Bw145Body weight QTL 1452.2body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)104194452678307017Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1600371Mcs21Mammary carcinoma susceptibility QTL 213mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)102887565052200160Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040035094102359817Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
9590268Scort13Serum corticosterone level QTL 133.260.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
1576311Pia26Pristane induced arthritis QTL 26joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103122402675632053Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
6893342Cm78Cardiac mass QTL 780.10.88heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)104287676679813922Rat
2292441Bp308Blood pressure QTL 308arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
2313055Bw96Body weight QTL 963.60.0001body mass (VT:0001259)body weight (CMO:0000012)101960648364606483Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102652195798952741Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 4 16 16 7 16
Low 18 8 8 4 8 15 12 25 4
Below cutoff 1 18 19 7 7 7 3 3 49 6 5 6 3

Sequence


RefSeq Acc Id: ENSRNOT00000047700   ⟹   ENSRNOP00000049077
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1043,022,996 - 43,034,476 (+)Ensembl
Rnor_6.0 Ensembl1044,271,587 - 44,282,726 (+)Ensembl
RefSeq Acc Id: NM_001191641   ⟹   NP_001178570
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81043,523,404 - 43,534,419 (+)NCBI
mRatBN7.21043,022,996 - 43,034,014 (+)NCBI
Rnor_6.01044,271,587 - 44,282,726 (+)NCBI
Rnor_5.01044,076,388 - 44,087,527 (+)NCBI
Celera1042,308,739 - 42,319,736 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039085946   ⟹   XP_038941874
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81043,523,344 - 43,536,435 (+)NCBI
mRatBN7.21043,022,936 - 43,036,030 (+)NCBI
RefSeq Acc Id: XM_039085947   ⟹   XP_038941875
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81043,523,344 - 43,533,720 (+)NCBI
mRatBN7.21043,022,936 - 43,033,322 (+)NCBI
RefSeq Acc Id: XM_039085948   ⟹   XP_038941876
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81043,523,345 - 43,536,435 (+)NCBI
mRatBN7.21043,022,937 - 43,036,052 (+)NCBI
RefSeq Acc Id: XR_005489808
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81043,523,341 - 43,533,869 (+)NCBI
mRatBN7.21043,022,934 - 43,033,465 (+)NCBI
RefSeq Acc Id: XR_005489809
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81043,523,341 - 43,536,435 (+)NCBI
mRatBN7.21043,022,933 - 43,036,052 (+)NCBI
RefSeq Acc Id: XR_005489810
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81043,523,341 - 43,534,317 (+)NCBI
mRatBN7.21043,022,933 - 43,033,911 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001178570 (Get FASTA)   NCBI Sequence Viewer  
  XP_038941874 (Get FASTA)   NCBI Sequence Viewer  
  XP_038941875 (Get FASTA)   NCBI Sequence Viewer  
  XP_038941876 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000049077.2
RefSeq Acc Id: NP_001178570   ⟸   NM_001191641
- UniProtKB: D3ZYF5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000049077   ⟸   ENSRNOT00000047700
RefSeq Acc Id: XP_038941874   ⟸   XM_039085946
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038941875   ⟸   XM_039085947
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038941876   ⟸   XM_039085948
- Peptide Label: isoform X3
Protein Domains
B box-type   B30.2/SPRY   RING-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZYF5-F1-model_v2 AlphaFold D3ZYF5 1-485 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1566174 AgrOrtholog
BioCyc Gene G2FUF-24961 BioCyc
Ensembl Genes ENSRNOG00000026430 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000047700.3 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.920 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro B30.2/SPRY_sf UniProtKB/TrEMBL
  B302 UniProtKB/TrEMBL
  Butyrophylin UniProtKB/TrEMBL
  ConA-like_dom UniProtKB/TrEMBL
  PRY UniProtKB/TrEMBL
  SPRY/PRY_TRIM58 UniProtKB/TrEMBL
  SPRY_rcpt UniProtKB/TrEMBL
  TRIM58_RING-HC UniProtKB/TrEMBL
  Znf_B-box UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
KEGG Report rno:303167 UniProtKB/TrEMBL
NCBI Gene 303167 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIM UniProtKB/TrEMBL
  E3 UBIQUITIN-PROTEIN LIGASE TRIM58 UniProtKB/TrEMBL
Pfam PRY UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
  zf-B_box UniProtKB/TrEMBL
  zf-C3HC4_4 UniProtKB/TrEMBL
PhenoGen Trim58 PhenoGen
PRINTS BUTYPHLNCDUF UniProtKB/TrEMBL
PROSITE B302_SPRY UniProtKB/TrEMBL
  ZF_BBOX UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000026430 RatGTEx
SMART BBOX UniProtKB/TrEMBL
  PRY UniProtKB/TrEMBL
  RING UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
Superfamily-SCOP B-box zinc-binding domain UniProtKB/TrEMBL
  ConA_like_lec_gl UniProtKB/TrEMBL
  RING/U-box UniProtKB/TrEMBL
UniProt D3ZYF5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Trim58  tripartite motif-containing 58   Trim58_predicted  tripartite motif-containing 58 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Trim58_predicted  tripartite motif-containing 58 (predicted)  RGD1566174_predicted  similar to novel protein (predicted)  Symbol and Name updated 1299863 APPROVED
2006-03-07 RGD1566174_predicted  similar to novel protein (predicted)  LOC303167  similar to novel protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC303167  similar to novel protein      Symbol and Name status set to provisional 70820 PROVISIONAL