Ntn4 (netrin 4) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Ntn4 (netrin 4) Rattus norvegicus
Analyze
Symbol: Ntn4
Name: netrin 4
RGD ID: 1565947
Description: Predicted to enable laminin-1 binding activity. Predicted to be involved in several processes, including axon guidance; basement membrane assembly; and substrate adhesion-dependent cell spreading. Predicted to act upstream of or within neuron remodeling and regulation of branching involved in salivary gland morphogenesis by extracellular matrix-epithelial cell signaling. Predicted to be located in basement membrane. Predicted to be part of laminin complex. Orthologous to human NTN4 (netrin 4); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acrylamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical protein LOC299737; LOC299737; netrin-4; RGD1565947; similar to netrin 4; uncharacterized protein LOC299737
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8730,073,637 - 30,187,407 (+)NCBIGRCr8
mRatBN7.2728,186,611 - 28,300,390 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl728,186,611 - 28,300,390 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx730,176,983 - 30,290,781 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0732,339,190 - 32,453,007 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0732,114,934 - 32,228,530 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0734,533,543 - 34,649,330 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl734,533,543 - 34,649,481 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0734,599,083 - 34,705,741 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4730,717,988 - 30,832,378 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera725,283,757 - 25,397,304 (+)NCBICelera
Cytogenetic Map7q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,1-dichloroethene  (ISO)
17beta-estradiol  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-palmitoylglycerol  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
atrazine  (EXP)
benzene-1,2,4-triol  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
chromium(6+)  (ISO)
clothianidin  (ISO)
cobalt dichloride  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
DDT  (EXP)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
diethyl phthalate  (ISO)
diisobutyl phthalate  (ISO)
diisononyl phthalate  (ISO)
dinophysistoxin 1  (ISO)
dioxygen  (ISO)
disodium selenite  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
Enterolactone  (ISO)
entinostat  (ISO)
ethanol  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
gentamycin  (EXP)
gold atom  (ISO)
gold(0)  (ISO)
graphene oxide  (ISO)
hydrogen peroxide  (ISO)
leflunomide  (ISO)
maneb  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (EXP,ISO)
mercury dibromide  (ISO)
methoxychlor  (EXP)
mifepristone  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
nitrofen  (EXP)
ozone  (ISO)
p-chloromercuribenzoic acid  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
Rutecarpine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
tetrachloromethane  (ISO)
titanium dioxide  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
trimellitic anhydride  (ISO)
urethane  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11038171   PMID:15186747   PMID:17588941   PMID:18757743   PMID:27856613   PMID:33914819  


Genomics

Comparative Map Data
Ntn4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8730,073,637 - 30,187,407 (+)NCBIGRCr8
mRatBN7.2728,186,611 - 28,300,390 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl728,186,611 - 28,300,390 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx730,176,983 - 30,290,781 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0732,339,190 - 32,453,007 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0732,114,934 - 32,228,530 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0734,533,543 - 34,649,330 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl734,533,543 - 34,649,481 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0734,599,083 - 34,705,741 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4730,717,988 - 30,832,378 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera725,283,757 - 25,397,304 (+)NCBICelera
Cytogenetic Map7q13NCBI
NTN4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381295,657,807 - 95,791,155 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1295,657,807 - 95,791,189 (-)EnsemblGRCh38hg38GRCh38
GRCh371296,051,583 - 96,184,933 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361294,575,714 - 94,708,667 (-)NCBINCBI36Build 36hg18NCBI36
Build 341294,554,050 - 94,687,004NCBI
Celera1295,723,494 - 95,856,412 (-)NCBICelera
Cytogenetic Map12q22NCBI
HuRef1293,118,535 - 93,251,385 (-)NCBIHuRef
CHM1_11296,016,835 - 96,149,725 (-)NCBICHM1_1
T2T-CHM13v2.01295,636,970 - 95,770,314 (-)NCBIT2T-CHM13v2.0
Ntn4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391093,476,911 - 93,581,834 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1093,476,543 - 93,583,069 (+)EnsemblGRCm39 Ensembl
GRCm381093,641,049 - 93,745,972 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1093,640,681 - 93,747,207 (+)EnsemblGRCm38mm10GRCm38
MGSCv371093,103,794 - 93,208,717 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361093,071,000 - 93,175,685 (+)NCBIMGSCv36mm8
Celera1095,621,616 - 95,722,654 (+)NCBICelera
Cytogenetic Map10C2NCBI
cM Map1048.59NCBI
Ntn4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540532,080,022 - 32,186,305 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540532,080,022 - 32,182,225 (-)NCBIChiLan1.0ChiLan1.0
NTN4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210103,735,343 - 103,868,258 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112103,731,733 - 103,864,979 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01293,253,945 - 93,387,184 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11296,643,804 - 96,776,346 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1296,643,804 - 96,776,346 (-)Ensemblpanpan1.1panPan2
NTN4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11535,527,491 - 35,650,170 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1535,528,133 - 35,649,566 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1535,914,163 - 36,036,825 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01536,192,167 - 36,314,846 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1536,191,693 - 36,313,981 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11535,465,093 - 35,587,698 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01535,559,576 - 35,682,174 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01535,822,731 - 35,945,599 (-)NCBIUU_Cfam_GSD_1.0
Ntn4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494524,355,161 - 24,463,664 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650711,771,692 - 11,880,023 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650711,771,692 - 11,880,271 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NTN4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl587,671,873 - 87,784,702 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1587,671,153 - 87,784,704 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2591,873,172 - 91,985,586 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NTN4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11191,052,142 - 91,172,463 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1191,051,662 - 91,172,522 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037153,968,586 - 154,112,997 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ntn4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475011,499,405 - 11,621,265 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475011,499,755 - 11,619,249 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ntn4
780 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:19
Count of miRNA genes:19
Interacting mature miRNAs:19
Transcripts:ENSRNOT00000007412
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)71965431749753746Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72192119566921195Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
1641885Alcrsp9Alcohol response QTL 9alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)72409960669099606Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72475184169751841Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat
1354637Scl30Serum cholesterol level QTL 303.7blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)71965431749753746Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
1354639Spl5Serum phospholipid level QTL 53.9blood LDL phospholipid amount (VT:0010505)blood low density lipoprotein phospholipid level (CMO:0001568)71965431752888450Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat
10755451Coatc11Coat color QTL 110coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)71794435762944357Rat
2317059Aia15Adjuvant induced arthritis QTL 152.46joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)71700459862004598Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)72055570529891047Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
70190Mcs6Mammary carcinoma susceptibility QTL 62.29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)72673740163902784Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat
61369Mcs2Mammary carcinoma susceptibility QTL 23.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)71903280735526300Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71557388960573889Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000007412   ⟹   ENSRNOP00000007412
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl728,186,611 - 28,300,390 (+)Ensembl
Rnor_6.0 Ensembl734,533,543 - 34,649,338 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000084185   ⟹   ENSRNOP00000068782
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl734,533,584 - 34,649,481 (+)Ensembl
RefSeq Acc Id: NM_001106780   ⟹   NP_001100250
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8730,073,637 - 30,187,407 (+)NCBI
mRatBN7.2728,186,611 - 28,300,390 (+)NCBI
Rnor_6.0734,533,543 - 34,649,330 (+)NCBI
Rnor_5.0734,599,083 - 34,705,741 (+)NCBI
RGSC_v3.4730,717,988 - 30,832,378 (+)RGD
Celera725,283,757 - 25,397,304 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001100250 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM16906 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000007412
  ENSRNOP00000007412.8
RefSeq Acc Id: NP_001100250   ⟸   NM_001106780
- Peptide Label: precursor
- UniProtKB: F1M4Q9 (UniProtKB/TrEMBL),   A6IFZ2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000007412   ⟸   ENSRNOT00000007412
Ensembl Acc Id: ENSRNOP00000068782   ⟸   ENSRNOT00000084185
Protein Domains
Laminin EGF-like   Laminin N-terminal   NTR

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JTN7-F1-model_v2 AlphaFold A0A0G2JTN7 1-631 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695162
Promoter ID:EPDNEW_R5674
Type:multiple initiation site
Name:Ntn4_1
Description:netrin 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0734,533,450 - 34,533,510EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565947 AgrOrtholog
BioCyc Gene G2FUF-34385 BioCyc
Ensembl Genes ENSRNOG00000005573 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000007412 ENTREZGENE
  ENSRNOT00000007412.8 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.120 UniProtKB/TrEMBL
  Galactose-binding domain-like UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
  Tie2 ligand-binding domain superfamily UniProtKB/TrEMBL
InterPro EGF_laminin UniProtKB/TrEMBL
  Laminin/Netrin_ECM UniProtKB/TrEMBL
  Laminin_N UniProtKB/TrEMBL
  Netrin-4_NTR UniProtKB/TrEMBL
  Netrin_domain UniProtKB/TrEMBL
  Netrin_module_non-TIMP UniProtKB/TrEMBL
  TIMP-like_OB-fold UniProtKB/TrEMBL
KEGG Report rno:299737 UniProtKB/TrEMBL
NCBI Gene 299737 ENTREZGENE
PANTHER NETRIN-4 UniProtKB/TrEMBL
  NETRIN/LAMININ-RELATED UniProtKB/TrEMBL
Pfam Laminin_EGF UniProtKB/TrEMBL
  Laminin_N UniProtKB/TrEMBL
  NTR UniProtKB/TrEMBL
PhenoGen Ntn4 PhenoGen
PRINTS EGFLAMININ UniProtKB/TrEMBL
PROSITE EGF_LAM_1 UniProtKB/TrEMBL
  EGF_LAM_2 UniProtKB/TrEMBL
  LAMININ_NTER UniProtKB/TrEMBL
  NTR UniProtKB/TrEMBL
RatGTEx ENSRNOG00000005573 RatGTEx
SMART C345C UniProtKB/TrEMBL
  EGF_Lam UniProtKB/TrEMBL
  LamNT UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
  TIMP_like UniProtKB/TrEMBL
UniProt A6IFZ2 ENTREZGENE, UniProtKB/TrEMBL
  F1M4Q9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-10-12 Ntn4  netrin 4  RGD1565947  similar to netrin 4  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1565947  similar to netrin 4   RGD1565947_predicted  similar to netrin 4 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1565947_predicted  similar to netrin 4 (predicted)  LOC299737  similar to netrin 4  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC299737  similar to netrin 4      Symbol and Name status set to provisional 70820 PROVISIONAL