Pphln1-ps3 (periphilin 1, pseudogene 3) - Rat Genome Database

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Gene: Pphln1-ps3 (periphilin 1, pseudogene 3) Rattus norvegicus
Analyze
Symbol: Pphln1-ps3
Name: periphilin 1, pseudogene 3
RGD ID: 1565661
Description: INTERACTS WITH bisphenol A
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC100909420; LOC361116; periphilin-1-like; RGD1565661; similar to RIKEN cDNA 3110001I22
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81613,130,980 - 13,132,192 (-)NCBIGRCr8
mRatBN7.21613,110,813 - 13,111,863 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.01614,595,851 - 14,597,297 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01614,496,493 - 14,497,678 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41613,553,903 - 13,555,211 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1613,369,283 - 13,370,446 (-)NCBICelera
Cytogenetic Map16p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
bisphenol A  (EXP)

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Pphln1-ps3
5 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1600369Hcas8Hepatocarcinoma susceptibility QTL 8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)16122477621Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126727669Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126727669Rat
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16126727669Rat
9590151Scort8Serum corticosterone level QTL 88.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)16130836262Rat
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16132139025Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133418960Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139533930Rat
631561Hcuc2Hepatic copper content QTL 22.8liver copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16143534949Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683223646053497Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
2301406Kidm39Kidney mass QTL 390.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)16285170915884239Rat
1300133Rf24Renal function QTL 243.64blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)16338015021361552Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16338015043025077Rat
737825Alc13Alcohol consumption QTL 134.5consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760916039848Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16422760943025077Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16422760946975965Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16422760948972724Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760949227609Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
61372Bp40Blood pressure QTL 402.2blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)16422773017696785Rat


Expression


Sequence


RefSeq Acc Id: XR_008282
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1613,369,486 - 13,370,349 (-)RGD
RefSeq Acc Id: XR_086041
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
RGSC_v3.41613,553,903 - 13,555,211 (-)RGD

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-11984 BioCyc
NCBI Gene Pphln1-ps3 ENTREZGENE
PhenoGen Pphln1-ps3 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Pphln1-ps3  periphilin 1, pseudogene 3  RGD1565661  similar to RIKEN cDNA 3110001I22  Symbol and Name Changed 1299863 APPROVED
2014-07-08 RGD1565661  similar to RIKEN cDNA 3110001I22  LOC100909420  periphilin-1-like  Data merged from RGD:6503505 737654 APPROVED
2012-07-05 LOC100909420  periphilin-1-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 RGD1565661  similar to RIKEN cDNA 3110001I22   RGD1565661_predicted  similar to RIKEN cDNA 3110001I22 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1565661_predicted  similar to RIKEN cDNA 3110001I22 (predicted)  LOC361116  similar to RIKEN cDNA 3110001I22  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC361116  similar to RIKEN cDNA 3110001I22      Symbol and Name status set to provisional 70820 PROVISIONAL