Ccdc85b (coiled-coil domain containing 85B) - Rat Genome Database

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Gene: Ccdc85b (coiled-coil domain containing 85B) Rattus norvegicus
Analyze
Symbol: Ccdc85b
Name: coiled-coil domain containing 85B
RGD ID: 1565319
Description: Predicted to enable delta-catenin binding activity. Predicted to be involved in negative regulation of DNA-templated transcription; negative regulation of cell growth; and negative regulation of fat cell differentiation. Predicted to be located in adherens junction; centrosome; and nucleus. Orthologous to human CCDC85B (coiled-coil domain containing 85B); INTERACTS WITH bisphenol A; dibutyl phthalate; 1,2-dimethylhydrazine (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: coiled-coil domain-containing protein 85B; LOC309161; RGD1565319; similar to Delta-interacting protein A (Hepatitis delta antigen interacting protein A)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81212,192,979 - 212,193,994 (-)NCBIGRCr8
mRatBN7.21202,763,645 - 202,764,660 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1202,763,631 - 202,764,703 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1211,115,951 - 211,116,966 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01218,209,051 - 218,210,066 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01210,900,092 - 210,901,107 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01220,835,647 - 220,837,220 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01227,764,980 - 227,766,556 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41208,099,703 - 208,100,997 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1200,299,725 - 200,301,298 (-)NCBICelera
Cytogenetic Map1q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15644333   PMID:17014843   PMID:17873903   PMID:22666460  


Genomics

Comparative Map Data
Ccdc85b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81212,192,979 - 212,193,994 (-)NCBIGRCr8
mRatBN7.21202,763,645 - 202,764,660 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1202,763,631 - 202,764,703 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1211,115,951 - 211,116,966 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01218,209,051 - 218,210,066 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01210,900,092 - 210,901,107 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01220,835,647 - 220,837,220 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01227,764,980 - 227,766,556 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41208,099,703 - 208,100,997 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1200,299,725 - 200,301,298 (-)NCBICelera
Cytogenetic Map1q43NCBI
CCDC85B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381165,890,673 - 65,891,635 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1165,890,673 - 65,891,635 (+)EnsemblGRCh38hg38GRCh38
GRCh371165,658,144 - 65,659,106 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361165,414,451 - 65,415,682 (+)NCBINCBI36Build 36hg18NCBI36
Celera1162,981,782 - 62,983,013 (+)NCBICelera
Cytogenetic Map11q13.1NCBI
HuRef1161,984,466 - 61,985,697 (+)NCBIHuRef
CHM1_11165,542,289 - 65,543,520 (+)NCBICHM1_1
T2T-CHM13v2.01165,883,735 - 65,884,697 (+)NCBIT2T-CHM13v2.0
Ccdc85b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39195,503,191 - 5,507,591 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl195,503,208 - 5,507,922 (-)EnsemblGRCm39 Ensembl
GRCm38195,453,163 - 5,457,563 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl195,453,180 - 5,457,894 (-)EnsemblGRCm38mm10GRCm38
MGSCv37195,453,163 - 5,457,549 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36195,456,539 - 5,457,549 (-)NCBIMGSCv36mm8
Celera195,325,136 - 5,329,522 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.33NCBI
Ccdc85b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542219,432,602 - 19,433,210 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542219,432,368 - 19,433,386 (-)NCBIChiLan1.0ChiLan1.0
CCDC85B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2967,119,320 - 67,120,171 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11168,161,962 - 68,162,975 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01161,250,913 - 61,251,926 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11164,578,202 - 64,581,942 (+)NCBIpanpan1.1PanPan1.1panPan2
CCDC85B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11851,375,015 - 51,376,044 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1851,375,261 - 51,375,866 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1849,983,525 - 49,984,536 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01852,413,106 - 52,414,117 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1852,413,212 - 52,414,066 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11851,513,175 - 51,514,186 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01851,087,534 - 51,088,545 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01851,876,848 - 51,877,859 (-)NCBIUU_Cfam_GSD_1.0
Ccdc85b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049477,207,023 - 7,208,062 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365993,649,613 - 3,650,221 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365993,649,372 - 3,650,408 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC85B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl26,436,794 - 6,437,808 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.126,436,787 - 6,437,828 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.225,540,816 - 5,542,354 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC85B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.118,366,166 - 8,367,670 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl18,366,409 - 8,367,017 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038105,655,347 - 105,656,856 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc85b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476720,525,942 - 20,526,550 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476720,525,728 - 20,527,337 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ccdc85b
3 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1357335Bw39Body weight QTL 393.3body mass (VT:0001259)body weight (CMO:0000012)1197814409242814409Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
2302375Bw83Body weight QTL 834.870.0002body mass (VT:0001259)body weight (CMO:0000012)1197697768242697768Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1177227632256448636Rat
2293674Bss39Bone structure and strength QTL 397.10.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)1201554356246554356Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
1354653Despr9Despair related QTL 90.00019locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1167909849212909849Rat
2293673Bss27Bone structure and strength QTL 2718.630.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)1171629477216629477Rat
2293677Bss41Bone structure and strength QTL 419.380.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1171629477216629477Rat
1302787Stl25Serum triglyceride level QTL 252.70.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)1180359209210702199Rat
1549830Bss1Bone structure and strength QTL 14.8femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1172609619217609619Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1115540693238914717Rat
70163Bw20Body weight QTL 205.1body mass (VT:0001259)body weight (CMO:0000012)1174133260219133260Rat
1578763Kidm29Kidney mass QTL 293.30.0001kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1179567751260522016Rat
1600395Niddm69Non-insulin dependent diabetes mellitus QTL 694.140.0002blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1195804352257091168Rat
1354624Cm35Cardiac mass QTL355.7heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1177227632256448636Rat
1600396Niddm68Non-insulin dependent diabetes mellitus QTL 684.970.0003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1195804352257091168Rat
1558658Bw59Body weight QTL 593.50.0003body mass (VT:0001259)body weight (CMO:0000012)1178784622223784622Rat
631838Niddm36Non-insulin dependent diabetes mellitus QTL 360.01insulin secretion trait (VT:0003564)calculated pancreatic islet insulin release measurement (CMO:0001217)1184550676229550676Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1153136852260522016Rat
2293689Bss47Bone structure and strength QTL 477.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)1171629477216629477Rat
152025235Bw194Body weight QTL 1944.86body mass (VT:0001259)1123556856242907031Rat
1600388Niddm67Non-insulin dependent diabetes mellitus QTL 675.840.000004blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1195804352257091168Rat
2293694Bss38Bone structure and strength QTL 387.050.0001femur strength trait (VT:0010010)femur stiffness (CMO:0001674)1201554356246554356Rat
1598853Memor3Memory QTL 34.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)1143506580212458660Rat
61341Bp26Blood pressure QTL 26arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1169537671214537671Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1150700247252085048Rat
2293693Bss22Bone structure and strength QTL 2233.520.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1171629477216629477Rat
2300161Bmd43Bone mineral density QTL 438.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1171629477216629477Rat
1300145Rf7Renal function QTL 72.96urine creatinine amount (VT:0010540)urine creatinine level (CMO:0000125)1185145134221264292Rat
61347Bp197Blood pressure QTL 1974.2arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)1158633083203633083Rat
8655655Arrd2Age-related retinal degeneration QTL 27.79retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1183970203243914901Rat
1358898Bp255Blood pressure QTL 2553.6arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1191019702246062233Rat
631214Bw61Body weight QTL613.40.0001intramuscular adipose amount (VT:0010044)intramuscular fat area (CMO:0001162)1173108781218108781Rat
7771612Cm80Cardiac mass QTL 808.4heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)1149448574221264292Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194642644214537671Rat
2300175Bmd40Bone mineral density QTL 4015.40.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)1201554356246554356Rat
2300174Bmd42Bone mineral density QTL 428.40.0001lumbar vertebra mineral mass (VT:0010511)bone mineral density (CMO:0001226)1171629477216629477Rat
737828Hcas3Hepatocarcinoma susceptibility QTL 34.9liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)1144267353222987745Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
1358886Bp260Blood pressure QTL 2603.67arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1151162766225824951Rat
737977Bp160Blood pressure QTL 1600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1181133855226133855Rat
2293654Bss30Bone structure and strength QTL 3032.650.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1171629477216629477Rat
2293655Bss36Bone structure and strength QTL 3610.660.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1201554356246554356Rat
1298084Thym4Thymus enlargement QTL 410.68thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1197814409242814409Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1150700142252085212Rat
2300187Bmd41Bone mineral density QTL 418.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1171629477216629477Rat
8552891Epfw5Epididymal fat weight QTL 54.4epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1193113876238113876Rat
1359018Hrtrt20Heart rate QTL 203.08heart pumping trait (VT:2000009)heart rate (CMO:0000002)1185356336202902618Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1156677124256448636Rat
1358292Cm37Cardiac mass QTL 376.28e-07heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)1196248093241248093Rat
61376Bp42Blood pressure QTL 4223.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1197814409242814409Rat
634313Niddm43Non-insulin dependent diabetes mellitus QTL 43blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1199050459259647894Rat
634312Bp143Blood pressure QTL 14330.0002arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1182623426219932796Rat
1358294Bw37Body weight QTL 3750.000011body mass (VT:0001259)body weight (CMO:0000012)1171310381216310381Rat
724559Pancm1Pancreatic morphology QTL 17.1islet of Langerhans morphology trait (VT:0005215)pancreatic islet damage composite score (CMO:0001156)1181759564214537555Rat
2312420Pur17Proteinuria QTL 177.10.0001urine protein amount (VT:0005160)urine total protein excretion rate (CMO:0000756)1156677124218753816Rat
10059600Bp378Blood pressure QTL 3783.080.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1176869060221869060Rat
7421630Bp362Blood pressure QTL 3620.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1118608292241799120Rat
619613Bp77Blood pressure QTL 770.01arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1164747424209747424Rat
2312564Glom18Glomerulus QTL 182.40.003kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)1185356336231689108Rat
634321Hc1Hypercalciuria QTL 12.91urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1178810256240830002Rat
2292218Kidm35Kidney mass QTL 35kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1199368955224569684Rat
724562Rends1Renal damage susceptibility QTL 10.05kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)1169537671214537671Rat
1331790Bp201Blood pressure QTL 2013.127arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1198211513225126682Rat
10059587Bw173Body weight QTL 1733.230.025body mass (VT:0001259)body weight (CMO:0000012)1202069611247069611Rat
2292222Bp307Blood pressure QTL 3073.060.0014arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1164310393213533942Rat
2292220Bp306Blood pressure QTL 3063.470.00087arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1164310393243914901Rat
10059590Kidm44Kidney mass QTL 443.420.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1191033875236033875Rat
1641926Teswt2Testicular weight QTL 22.82testis mass (VT:1000644)both testes wet weight (CMO:0000175)1197697768238755659Rat
631658Cm7Cardiac mass QTL 75.320.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)1196248093241248093Rat
1600380Niddm70Non-insulin dependent diabetes mellitus QTL 703.10.0008blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1176550523221550523Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
1582206Kidm33Kidney mass QTL 336.9kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1188377360224054420Rat
8655855Arrd3Age-related retinal degeneration QTL 33.07lens clarity trait (VT:0001304)cataract incidence/prevalence measurement (CMO:0001585)1183970203243914901Rat
634338Hcar4Hepatocarcinoma resistance QTL 44.6liver integrity trait (VT:0010547)liver tumorous lesion number to liver area ratio (CMO:0001210)1193422268214537671Rat
6903303Scl34Serum cholesterol QTL 342.50.0033blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)1180359209218108781Rat
1600374Mcs17Mammary carcinoma susceptibility QTL 173mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1197670404242670404Rat
2293083Iddm25Insulin dependent diabetes mellitus QTL 254.18blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1181829673224569684Rat
1354606Bp246Blood pressure QTL 2463.6arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)1102813953218753816Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1176426412257976495Rat
1358191Ept10Estrogen-induced pituitary tumorigenesis QTL 103.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)1192825253243914732Rat
7394701Uae46Urinary albumin excretion QTL 463.60.0056urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1201554356246554356Rat


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSRNOT00000097334   ⟹   ENSRNOP00000088557
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1202,763,631 - 202,764,703 (-)Ensembl
RefSeq Acc Id: NM_001400779   ⟹   NP_001387708
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81212,192,979 - 212,193,994 (-)NCBI
mRatBN7.21202,763,645 - 202,764,660 (-)NCBI
RefSeq Acc Id: NM_001400780   ⟹   NP_001387709
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81212,192,979 - 212,193,994 (-)NCBI
mRatBN7.21202,763,645 - 202,764,660 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001387708 (Get FASTA)   NCBI Sequence Viewer  
  NP_001387709 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM12490 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000088557.1
Ensembl Acc Id: ENSRNOP00000088557   ⟸   ENSRNOT00000097334
RefSeq Acc Id: NP_001387709   ⟸   NM_001400780
- Peptide Label: isoform 2
- UniProtKB: A0A8I6A834 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001387708   ⟸   NM_001400779
- Peptide Label: isoform 1

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565319 AgrOrtholog
BioCyc Gene G2FUF-56680 BioCyc
Ensembl Genes ENSRNOG00000070266 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000097334.1 UniProtKB/TrEMBL
NCBI Gene 309161 ENTREZGENE
PhenoGen Ccdc85b PhenoGen
RatGTEx ENSRNOG00000070266 RatGTEx
UniProt A0A8I6A834 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-05-31 Ccdc85b  coiled-coil domain containing 85B  Ccdc85b  coiled-coil domain containing 85B  Data merged from RGD:149736287 737654 PROVISIONAL
2021-08-09 Ccdc85b  coiled-coil domain containing 85B      Symbol and Name status set to provisional 45752 PROVISIONAL
2008-03-07 Ccdc85b  coiled-coil domain containing 85B  RGD1565319_predicted  similar to Delta-interacting protein A (Hepatitis delta antigen interacting protein A) (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-10 RGD1565319_predicted  similar to Delta-interacting protein A (Hepatitis delta antigen interacting protein A) (predicted)      Name updated 1299863 APPROVED
2006-03-07 RGD1565319_predicted  similar to Delta-interacting protein A (Hepatitis delta antigen interacting protein A) (predicted)  LOC309161  similar to Delta-interacting protein A (Hepatitis delta antigen interacting protein A)  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC309161  similar to Delta-interacting protein A (Hepatitis delta antigen interacting protein A)      Symbol and Name status set to provisional 70820 PROVISIONAL