Ggta1l1 (glycoprotein, alpha-galactosyltransferase 1-like 1) - Rat Genome Database

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Gene: Ggta1l1 (glycoprotein, alpha-galactosyltransferase 1-like 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Ggta1l1
Name: glycoprotein, alpha-galactosyltransferase 1-like 1
RGD ID: 1565200
Description: Predicted to enable glycosyltransferase activity. Predicted to be involved in lipid glycosylation. Predicted to be located in Golgi cisterna membrane. Predicted to be active in Golgi apparatus and vesicle.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ABO-family member 5; ABO-family member protein 5; galactosyltransferase; Ggta1; Glt6d1; glycosyltransferase 6 domain-containing protein 1; LOC652927; N-acetyllactosaminide alpha-1,3-galactosyltransferase; N-acetyllactosaminide alpha-1,3-galactosyltransferase-like 1; UDP-galactose:beta-D-galactosyl-1,4-N-acetyl-D-glucosaminide alpha-1,3-galactosyltransferase
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8339,082,149 - 39,099,154 (-)NCBIGRCr8
mRatBN7.2318,684,676 - 18,701,674 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl318,684,757 - 18,701,661 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx321,755,990 - 21,771,551 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0330,341,027 - 30,356,588 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0328,594,904 - 28,610,468 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0314,555,916 - 14,573,016 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl314,556,033 - 14,571,640 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0319,873,457 - 19,889,856 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4314,432,774 - 14,448,906 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera313,397,770 - 13,413,118 (-)NCBICelera
Cytogenetic Map3p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15057822  


Genomics

Variants

.
Variants in Ggta1l1
154 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:124
Count of miRNA genes:103
Interacting mature miRNAs:111
Transcripts:ENSRNOT00000060013
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)3127494778Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3131158234Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)3133230976Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)diastolic blood pressure (CMO:0000005)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)pulse pressure (CMO:0000292)3133278763Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3133278763Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)3136847613Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3138710544Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3139874793Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)3822719433703538Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)3865816227494778Rat
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)3865816227494778Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)31077870450302886Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)31077870450302886Rat
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1558650Cm48Cardiac mass QTL 4840.0001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)31077882330356773Rat
1558657Cm43Cardiac mass QTL 436.60.0000000293heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31500542276927699Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)31695470861954708Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)heart rate (CMO:0000002)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)body weight (CMO:0000012)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)heart rate (CMO:0000002)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)body weight (CMO:0000012)31737470335528639Rat
2325840Bp345Blood pressure QTL 3450.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31831145428441896Rat
731172Bp151Blood pressure QTL 1510.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31831145447233430Rat
12879849Bw180Body weight QTL 1800.037body mass (VT:0001259)body weight (CMO:0000012)31831145447233430Rat
12879850Cm91Cardiac mass QTL 910.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)31831145447233430Rat
12879851Cm92Cardiac mass QTL 920.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)31831145447233430Rat
12879852Cm93Cardiac mass QTL 930.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)31831145447233430Rat
12879853Am5Aortic mass QTL 50.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)31831145447233430Rat
12879854Kidm63Kidney mass QTL 630.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)31831145447233430Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

circulatory system endocrine system hemolymphoid system reproductive system respiratory system
High
Medium 6
Low 2
Below cutoff 2 3 3 5 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001037583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AY524048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000060013   ⟹   ENSRNOP00000056765
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl318,684,757 - 18,701,661 (-)Ensembl
Rnor_6.0 Ensembl314,556,033 - 14,571,640 (-)Ensembl
RefSeq Acc Id: NM_001037583   ⟹   NP_001032672
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8339,082,150 - 39,099,070 (-)NCBI
mRatBN7.2318,684,676 - 18,701,595 (-)NCBI
Rnor_6.0314,556,033 - 14,571,640 (-)NCBI
Rnor_5.0319,873,457 - 19,889,856 (-)NCBI
RGSC_v3.4314,432,774 - 14,448,906 (-)RGD
Celera313,397,770 - 13,413,118 (-)RGD
Sequence:
RefSeq Acc Id: XM_006234046   ⟹   XP_006234108
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8339,082,149 - 39,099,154 (-)NCBI
mRatBN7.2318,684,718 - 18,701,664 (-)NCBI
Rnor_6.0314,555,916 - 14,573,016 (-)NCBI
Rnor_5.0319,873,457 - 19,889,856 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017592032   ⟹   XP_017447521
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8339,082,149 - 39,099,138 (-)NCBI
mRatBN7.2318,684,718 - 18,701,541 (-)NCBI
Rnor_6.0314,555,916 - 14,571,647 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039105821   ⟹   XP_038961749
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8339,082,149 - 39,098,987 (-)NCBI
mRatBN7.2318,684,718 - 18,701,515 (-)NCBI
RefSeq Acc Id: XM_039105822   ⟹   XP_038961750
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8339,082,149 - 39,099,138 (-)NCBI
mRatBN7.2318,684,718 - 18,701,674 (-)NCBI
RefSeq Acc Id: XM_039105823   ⟹   XP_038961751
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8339,082,149 - 39,099,026 (-)NCBI
mRatBN7.2318,684,718 - 18,701,674 (-)NCBI
RefSeq Acc Id: XM_063284530   ⟹   XP_063140600
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8339,082,149 - 39,099,135 (-)NCBI
RefSeq Acc Id: XM_063284531   ⟹   XP_063140601
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8339,082,149 - 39,099,134 (-)NCBI
RefSeq Acc Id: XM_063284532   ⟹   XP_063140602
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8339,082,149 - 39,099,152 (-)NCBI
RefSeq Acc Id: NP_001032672   ⟸   NM_001037583
- UniProtKB: G3V9Q9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006234108   ⟸   XM_006234046
- Peptide Label: isoform X1
- UniProtKB: G3V9Q9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017447521   ⟸   XM_017592032
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000056765   ⟸   ENSRNOT00000060013
RefSeq Acc Id: XP_038961750   ⟸   XM_039105822
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038961751   ⟸   XM_039105823
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038961749   ⟸   XM_039105821
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063140602   ⟸   XM_063284532
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063140600   ⟸   XM_063284530
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063140601   ⟸   XM_063284531
- Peptide Label: isoform X4

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V9Q9-F1-model_v2 AlphaFold G3V9Q9 1-321 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565200 AgrOrtholog
BioCyc Gene G2FUF-50054 BioCyc
Ensembl Genes ENSRNOG00000042373 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000060013 ENTREZGENE
  ENSRNOT00000060013.2 UniProtKB/Swiss-Prot
InterPro Glyco_trans_6 UniProtKB/Swiss-Prot
  Nucleotide-diphossugar_trans UniProtKB/Swiss-Prot
KEGG Report rno:652927 UniProtKB/Swiss-Prot
NCBI Gene 652927 ENTREZGENE
PANTHER N-ACETYLLACTOSAMINIDE ALPHA-1,3-GALACTOSYLTRANSFERASE-LIKE 1 UniProtKB/Swiss-Prot
  PTHR10462 UniProtKB/Swiss-Prot
Pfam Glyco_transf_6 UniProtKB/Swiss-Prot
PhenoGen Ggta1l1 PhenoGen
RatGTEx ENSRNOG00000042373 RatGTEx
Superfamily-SCOP SSF53448 UniProtKB/Swiss-Prot
UniProt G3V9Q9 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-08-30 Ggta1l1  glycoprotein, alpha-galactosyltransferase 1-like 1  LOC652927  ABO-family member 5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 LOC652927  ABO-family member 5      Symbol and Name status set to provisional 70820 PROVISIONAL