Crtap (cartilage associated protein) - Rat Genome Database

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Gene: Crtap (cartilage associated protein) Rattus norvegicus
Analyze
Symbol: Crtap
Name: cartilage associated protein
RGD ID: 1565180
Description: Predicted to contribute to collagen binding activity. Predicted to be involved in several processes, including collagen fibril organization; negative regulation of post-translational protein modification; and protein stabilization. Predicted to act upstream of or within peptidyl-proline hydroxylation to 3-hydroxy-L-proline. Predicted to be located in extracellular space. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in osteogenesis imperfecta type 7. Orthologous to human CRTAP (cartilage associated protein); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cartilage associated protein-like 1; cartilage-associated protein-like; Crtapl1; LOC108348127; LOC363158; RGD1565180; similar to Cartilage-associated protein precursor
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88122,926,117 - 122,945,843 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8122,926,117 - 122,945,843 (-)EnsemblGRCr8
mRatBN7.28114,047,929 - 114,067,636 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8114,047,933 - 114,067,631 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8119,664,008 - 119,684,195 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08117,863,271 - 117,883,459 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08115,706,053 - 115,726,233 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08122,394,451 - 122,402,198 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8122,417,532 - 122,421,384 (-)Ensemblrn6Rnor6.0
Rnor_5.08121,719,062 - 121,734,324 (-)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.08121,695,467 - 121,715,067 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48118,765,925 - 118,773,673 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8113,306,491 - 113,314,398 (-)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-methylcholine  (ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
Azoxymethane  (ISO)
benzatropine  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
bisphenol F  (ISO)
butanal  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
Cuprizon  (EXP)
cytarabine  (ISO)
dextran sulfate  (ISO)
Dibutyl phosphate  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
fenamidone  (ISO)
fenpyroximate  (ISO)
folic acid  (ISO)
FR900359  (ISO)
furan  (EXP)
gentamycin  (EXP)
glyphosate  (ISO)
herbicide  (ISO)
ivermectin  (ISO)
lidocaine  (EXP)
mercury dichloride  (EXP)
methimazole  (EXP)
monosodium L-glutamate  (ISO)
nickel atom  (ISO)
nitrofen  (EXP)
okadaic acid  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
pirinixic acid  (EXP,ISO)
propiconazole  (EXP)
SB 431542  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
sulfadimethoxine  (EXP)
temozolomide  (ISO)
tetrachloromethane  (EXP,ISO)
thifluzamide  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
valproic acid  (ISO)
vincristine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
endoplasmic reticulum  (IBA,IEA,ISO)
extracellular space  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:14581517   PMID:17055431   PMID:19846465   PMID:20089953  


Genomics

Comparative Map Data
Crtap
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88122,926,117 - 122,945,843 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8122,926,117 - 122,945,843 (-)EnsemblGRCr8
mRatBN7.28114,047,929 - 114,067,636 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8114,047,933 - 114,067,631 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8119,664,008 - 119,684,195 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08117,863,271 - 117,883,459 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08115,706,053 - 115,726,233 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08122,394,451 - 122,402,198 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8122,417,532 - 122,421,384 (-)Ensemblrn6Rnor6.0
Rnor_5.08121,719,062 - 121,734,324 (-)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.08121,695,467 - 121,715,067 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48118,765,925 - 118,773,673 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8113,306,491 - 113,314,398 (-)NCBICelera
Cytogenetic Map8q32NCBI
CRTAP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38333,114,014 - 33,147,773 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl333,114,014 - 33,147,773 (+)Ensemblhg38GRCh38
GRCh37333,155,506 - 33,189,265 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36333,130,483 - 33,164,269 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34333,130,482 - 33,164,269NCBI
Celera333,098,553 - 33,132,585 (+)NCBICelera
Cytogenetic Map3p22.3NCBI
HuRef333,088,585 - 33,093,213 (-)NCBIHuRef
CHM1_1333,105,509 - 33,139,329 (+)NCBICHM1_1
T2T-CHM13v2.0333,115,771 - 33,149,528 (+)NCBIT2T-CHM13v2.0
Crtap
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399114,204,204 - 114,219,743 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9114,204,202 - 114,219,743 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm389114,375,131 - 114,390,712 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9114,375,134 - 114,390,675 (-)Ensemblmm10GRCm38
MGSCv379114,284,249 - 114,299,830 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv369114,223,836 - 114,239,368 (-)NCBIMGSCv36mm8
Celera9114,846,559 - 114,862,195 (-)NCBICelera
Cytogenetic Map9F3NCBI
cM Map964.39NCBI
Crtap
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955421384,668 - 408,214 (+)Ensembl
ChiLan1.0NW_004955421384,668 - 408,214 (+)NCBIChiLan1.0ChiLan1.0
CRTAP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2233,089,852 - 33,120,326 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1333,095,851 - 33,125,090 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0333,040,030 - 33,071,095 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1333,342,700 - 33,376,184 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl333,342,694 - 33,370,863 (+)EnsemblpanPan2panpan1.1
CRTAP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1233,694,695 - 3,723,119 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl233,698,407 - 3,722,800 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha233,736,004 - 3,767,088 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0233,951,805 - 3,982,905 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl233,958,025 - 3,982,886 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1233,786,542 - 3,817,624 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0233,913,837 - 3,944,928 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0233,887,433 - 3,918,531 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Crtap
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118190,312,838 - 190,334,055 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647323,451,411 - 23,472,736 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647323,451,394 - 23,472,645 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CRTAP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1318,995,234 - 19,035,720 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11318,994,371 - 19,040,297 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CRTAP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11577,608,493 - 77,636,242 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1577,608,760 - 77,635,960 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604150,987,810 - 51,019,619 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Crtap
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478811,130,278 - 11,153,965 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462478811,130,232 - 11,153,322 (+)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Crtap
269 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:343
Count of miRNA genes:174
Interacting mature miRNAs:207
Transcripts:ENSRNOT00000013519, ENSRNOT00000074238, ENSRNOT00000075524
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)861290298119084929Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)873473045118473045Rat
1358903Bp252Blood pressure QTL 25270.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)871888757116888757Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)871888757116888757Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)893535351123900184Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8100149864120994388Rat
1599689Iddm24Insulin dependent diabetes mellitus QTL 244.720.001blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)8112834440118649220Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)846531639119088626Rat
738014Anxrr15Anxiety related response QTL 153.60.005locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)895718998123900184Rat
2300182Bmd56Bone mineral density QTL 565.4femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)895718998123900184Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)876468691121468691Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)870513503118219066Rat
1358893Bp263Blood pressure QTL 2635.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)871888757116888757Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)871888757116888757Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)882460758122812818Rat

Markers in Region
BI280125  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28114,048,021 - 114,048,188 (+)MAPPERmRatBN7.2
Rnor_6.08122,382,706 - 122,382,872NCBIRnor6.0
Rnor_5.08121,695,560 - 121,695,726UniSTSRnor5.0
RGSC_v3.48118,754,046 - 118,754,212UniSTSRGSC3.4
Celera8113,294,664 - 113,294,830UniSTS
RH 3.4 Map81196.8UniSTS
Cytogenetic Map8q32UniSTS
BI282362  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28114,048,134 - 114,048,305 (+)MAPPERmRatBN7.2
Rnor_6.08122,382,819 - 122,382,989NCBIRnor6.0
Rnor_5.08121,695,673 - 121,695,843UniSTSRnor5.0
RGSC_v3.48118,754,159 - 118,754,329UniSTSRGSC3.4
Celera8113,294,777 - 113,294,947UniSTS
RH 3.4 Map81207.1UniSTS
Cytogenetic Map8q32UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
22 12 73 183 113 108 65 98 65 12 392 216 11 150 81 103 43 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000074238   ⟹   ENSRNOP00000064016
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8114,059,796 - 114,067,631 (-)Ensembl
Rnor_6.0 Ensembl8122,398,276 - 122,402,127 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000075524   ⟹   ENSRNOP00000064550
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl8122,417,532 - 122,421,384 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000076548   ⟹   ENSRNOP00000068391
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8122,926,117 - 122,945,843 (-)Ensembl
mRatBN7.2 Ensembl8114,047,933 - 114,067,631 (-)Ensembl
Rnor_6.0 Ensembl8122,382,617 - 122,402,197 (-)Ensembl
RefSeq Acc Id: NM_001108785   ⟹   NP_001102255
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88122,938,089 - 122,945,843 (-)NCBI
mRatBN7.28114,059,900 - 114,067,636 (-)NCBI
Rnor_6.08122,394,451 - 122,402,198 (-)NCBI
Rnor_5.08121,719,062 - 121,734,324 (-)NCBI
RGSC_v3.48118,765,925 - 118,773,673 (-)RGD
Celera8113,306,491 - 113,314,398 (-)RGD
Sequence:
RefSeq Acc Id: NM_001401203   ⟹   NP_001388132
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88122,926,117 - 122,945,843 (-)NCBI
mRatBN7.28114,047,929 - 114,067,636 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001102255 (Get FASTA)   NCBI Sequence Viewer  
  NP_001388132 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL76993 (Get FASTA)   NCBI Sequence Viewer  
  EDL76994 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000064016.1
  ENSRNOP00000068391
  ENSRNOP00000068391.1
RefSeq Acc Id: NP_001102255   ⟸   NM_001108785
- Peptide Label: isoform 2 precursor
- UniProtKB: M0R3U4 (UniProtKB/TrEMBL),   A6I3N4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000064550   ⟸   ENSRNOT00000075524
Ensembl Acc Id: ENSRNOP00000064016   ⟸   ENSRNOT00000074238
Ensembl Acc Id: ENSRNOP00000068391   ⟸   ENSRNOT00000076548
RefSeq Acc Id: NP_001388132   ⟸   NM_001401203
- Peptide Label: isoform 1 precursor
- UniProtKB: A0A096MK61 (UniProtKB/TrEMBL),   A6I3N2 (UniProtKB/TrEMBL)
Protein Domains
Leprecan-like alpha-helical

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A096MK61-F1-model_v2 AlphaFold A0A096MK61 1-403 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696362
Promoter ID:EPDNEW_R6877
Type:initiation region
Name:Crtapl1_2
Description:cartilage associated protein-like 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R6878  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08122,402,195 - 122,402,255EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565180 AgrOrtholog
BioCyc Gene G2FUF-28931 BioCyc
Ensembl Genes ENSRNOG00000009878 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000048343 Ensembl
Ensembl Transcript ENSRNOT00000074238.2 UniProtKB/TrEMBL
  ENSRNOT00000076548 ENTREZGENE
  ENSRNOT00000076548.3 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
InterPro Collagen_mod_leprecan UniProtKB/TrEMBL
  Leprecan_dom UniProtKB/TrEMBL
  TPR-like_helical_dom UniProtKB/TrEMBL
KEGG Report rno:363158 UniProtKB/TrEMBL
NCBI Gene 363158 ENTREZGENE
PANTHER PROTEIN LYSINE HYDROXYLATION COMPLEX COMPONENT UniProtKB/TrEMBL
  PTHR13986:SF3 UniProtKB/TrEMBL
Pfam TPR_leprecan UniProtKB/TrEMBL
PhenoGen Crtap PhenoGen
RatGTEx ENSRNOG00000009878 RatGTEx
  ENSRNOG00000048343 RatGTEx
UniProt A0A096MK61 ENTREZGENE, UniProtKB/TrEMBL
  A6I3N2 ENTREZGENE, UniProtKB/TrEMBL
  A6I3N4 ENTREZGENE, UniProtKB/TrEMBL
  M0R3U4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-02-10 Crtap  cartilage associated protein  Crtapl1  cartilage associated protein-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2022-02-10 Crtapl1  cartilage associated protein-like 1  Crtap  cartilage associated protein  Data merged from RGD:7602347 737654 PROVISIONAL
2021-03-09 Crtapl1  cartilage associated protein-like 1  LOC108348127  cartilage-associated protein-like  Data merged from RGD:11389066 737654 PROVISIONAL
2016-08-02 LOC108348127  cartilage-associated protein-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2015-12-21 Crtapl1  cartilage associated protein-like 1  Crtap  cartilage associated protein  Name and Symbol changed 629549 APPROVED
2015-12-21 Crtap  cartilage associated protein  LOC102555086  cartilage-associated protein-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-12-18 LOC102555086  cartilage-associated protein-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-03-06 Crtap  cartilage associated protein  RGD1565180_predicted  similar to Cartilage-associated protein precursor (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1565180_predicted  similar to Cartilage-associated protein precursor (predicted)  LOC363158  similar to Cartilage-associated protein precursor  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC363158  similar to Cartilage-associated protein precursor      Symbol and Name status set to provisional 70820 PROVISIONAL