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Gene: Atp10b (ATPase phospholipid transporting 10B) Rattus norvegicus

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Symbol:

Atp10b

Name:

ATPase phospholipid transporting 10B

RGD ID:

1565126

Description:

Predicted to enable glycosylceramide flippase activity and phosphatidylcholine flippase activity. Predicted to be involved in lysosomal membrane organization and phospholipid translocation. Predicted to be located in endoplasmic reticulum; late endosome membrane; and lysosomal membrane. Predicted to be part of phospholipid-translocating ATPase complex. Predicted to be active in plasma membrane. Orthologous to human ATP10B (ATPase phospholipid transporting 10B (putative)); INTERACTS WITH bisphenol A; chlormequat chloride; gentamycin.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

ATPase phospholipid transporting 10B (putative); ATPase, class V, type 10B; LOC303056; phospholipid-transporting ATPase VB; probable phospholipid-transporting ATPase VB; RGD1565126; similar to novel protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ATP10B (ATPase phospholipid transporting 10B (putative))	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Atp10b (ATPase, class V, type 10B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Atp10b (ATPase phospholipid transporting 10B (putative))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ATP10B (ATPase phospholipid transporting 10B (putative))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ATP10B (ATPase phospholipid transporting 10B (putative))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Atp10b (ATPase phospholipid transporting 10B (putative))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ATP10B (ATPase phospholipid transporting 10B (putative))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ATP10B (ATPase phospholipid transporting 10B (putative))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Atp10b (ATPase phospholipid transporting 10B (putative))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Atp10b (ATPase phospholipid transporting 10B (putative))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ATP10B (ATPase phospholipid transporting 10B (putative))	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Atp10b (ATPase, class V, type 10B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	atp10b (ATPase phospholipid transporting 10B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG33298	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG33298	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	DNF1	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	DNF2	Alliance	DIOPT (Ensembl Compara\|OrthoFinder)
Saccharomyces cerevisiae (baker's yeast):	DNF2	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|PhylomeDB)
Caenorhabditis elegans (roundworm):	tat-3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	tat-3	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	tat-4	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	atp10b	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	atp10b	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	27,996,729 - 28,252,801 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	27,910,295 - 28,251,450 (+)	Ensembl				GRCr8
mRatBN7.2	10	27,495,207 - 27,751,313 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	27,408,747 - 27,749,637 (+)	Ensembl				mRatBN7.2
Rnor_6.0	10	28,449,248 - 28,862,423 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	28,449,335 - 28,864,255 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	28,530,567 - 28,655,153 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	28,319,082 - 28,436,878 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	26,922,039 - 27,243,972 (+)	NCBI		Celera
Cytogenetic Map	10	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

4-hydroxyphenyl retinamide (ISO)

amphotericin B (ISO)

arsane (ISO)

arsenic atom (ISO)

avobenzone (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlordecone (ISO)

chlormequat chloride (EXP)

clobetasol (ISO)

cobalt atom (ISO)

dorsomorphin (ISO)

fulvestrant (ISO)

gentamycin (EXP)

glyphosate (EXP)

lead(0) (ISO)

lipopolysaccharide (ISO)

methapyrilene (ISO)

methoxychlor (EXP)

N,N-diethyl-m-toluamide (EXP)

nitrofen (EXP)

ozone (EXP,ISO)

paracetamol (EXP)

paraquat (EXP)

permethrin (EXP,ISO)

potassium dichromate (ISO)

progesterone (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

temozolomide (ISO)

testosterone (ISO)

Theaflavin 3,3'-digallate (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

Tungsten carbide (ISO)

valproic acid (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

lipid translocation (IEA)

lysosomal membrane organization (IEA,ISO)

phospholipid translocation (IBA)

phospholipid transport (IEA)

Cellular Component

endoplasmic reticulum (IEA,ISO,ISS)

endoplasmic reticulum membrane (IEA)

late endosome membrane (IEA,ISO)

lysosomal membrane (IEA,ISO)

membrane (IEA,ISO)

phospholipid-translocating ATPase complex (IEA,ISO)

plasma membrane (IBA)

Molecular Function

ATP binding (IEA)

ATP hydrolysis activity (IEA)

ATPase-coupled intramembrane lipid transporter activity (IBA,IEA)

glycosylceramide flippase activity (IEA,ISO)

magnesium ion binding (IEA)

metal ion binding (IEA)

nucleotide binding (IEA)

phosphatidylcholine flippase activity (IEA,ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:21914794

Genomics

Comparative Map Data

Atp10b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	27,996,729 - 28,252,801 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	27,910,295 - 28,251,450 (+)	Ensembl				GRCr8
mRatBN7.2	10	27,495,207 - 27,751,313 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	27,408,747 - 27,749,637 (+)	Ensembl				mRatBN7.2
Rnor_6.0	10	28,449,248 - 28,862,423 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	28,449,335 - 28,864,255 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	28,530,567 - 28,655,153 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	28,319,082 - 28,436,878 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	26,922,039 - 27,243,972 (+)	NCBI		Celera
Cytogenetic Map	10	q21	NCBI

ATP10B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	160,563,120 - 160,929,360 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	160,563,120 - 160,852,214 (-)	Ensembl			hg38	GRCh38
GRCh37	5	159,990,127 - 160,279,218 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	159,922,705 - 160,211,797 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	5	159,922,717 - 160,211,624	NCBI
Celera	5	156,022,604 - 156,311,791 (-)	NCBI		Celera
Cytogenetic Map	5	q34	NCBI
HuRef	5	155,082,952 - 155,372,751 (-)	NCBI		HuRef
CHM1_1	5	159,422,911 - 159,712,104 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	161,091,715 - 161,458,290 (-)	NCBI		T2T-CHM13v2.0

Atp10b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	42,902,991 - 43,153,112 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	43,040,704 - 43,153,112 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	11	43,012,164 - 43,262,285 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	43,149,877 - 43,262,285 (+)	Ensembl			mm10	GRCm38
MGSCv37	11	42,963,379 - 43,075,787 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	11	42,995,197 - 43,097,814 (+)	NCBI		MGSCv36	mm8
Celera	11	47,779,009 - 47,888,878 (+)	NCBI		Celera
Cytogenetic Map	11	A5	NCBI
cM Map	11	25.68	NCBI

Atp10b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955408	14,492,752 - 14,595,122 (-)	Ensembl
ChiLan1.0	NW_004955408	14,495,165 - 14,815,648 (-)	NCBI	ChiLan1.0	ChiLan1.0

ATP10B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	155,747,721 - 156,029,806 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	153,887,267 - 154,169,352 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	155,952,876 - 156,234,942 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	162,646,009 - 162,927,690 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	162,646,009 - 162,862,268 (-)	Ensembl			panPan2	panpan1.1

ATP10B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	49,856,489 - 50,163,033 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	49,912,397 - 50,161,319 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	49,753,202 - 50,058,706 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	50,291,179 - 50,598,476 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	50,356,890 - 50,598,347 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	50,101,012 - 50,406,898 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	50,224,213 - 50,530,460 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	50,743,151 - 51,050,762 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Atp10b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	104,284,223 - 104,548,576 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936515	2,885,522 - 2,995,709 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936515	2,885,522 - 2,995,763 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ATP10B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	62,569,813 - 62,918,481 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	16	62,569,813 - 62,918,484 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	68,097,726 - 68,220,004 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ATP10B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	62,931,458 - 63,143,624 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	62,931,078 - 63,051,383 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666034	14,372,159 - 14,654,556 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Atp10b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624733	28,841,329 - 28,946,717 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624733	28,618,696 - 28,944,804 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Atp10b
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	9	25,916,830 - 26,092,196 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Atp10b
1590 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	89
Count of miRNA genes:	72
Interacting mature miRNAs:	77
Transcripts:	ENSRNOT00000029118
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631564	Apr3	Acute phase response QTL 3	3.9		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	10	15776754	60776754	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	10	27023535	98502431	Rat
724556	Pur2	Proteinuria QTL 2	5.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	22931373	91127454	Rat
2293669	Bmd33	Bone mineral density QTL 33	4.5	0.0001	femur strength trait (VT:0010010)	femoral neck polar moment of inertia (CMO:0001670)	10	27443787	72443787	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6660923	73950353	Rat
2313066	Bss63	Bone structure and strength QTL 63	1.4	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	10	5893811	50893811	Rat
631554	Bp133	Blood pressure QTL 133		0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1250554	64349221	Rat
2313064	Bmd71	Bone mineral density QTL 71	0.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	10	5893811	50893811	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
2293679	Bmd30	Bone mineral density QTL 30	3.5	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	10	27443787	72443787	Rat
70223	Bp57	Blood pressure QTL 57	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	14653541	59653541	Rat
1354587	Kidm21	Kidney mass QTL 21	3.3		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	10	15533012	73695498	Rat
634329	Pia15	Pristane induced arthritis QTL 15	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	24662123	73695339	Rat
1578761	Stresp21	Stress response QTL 21	3.3		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	6877142	51877142	Rat
70224	Eae3	Experimental allergic encephalomyelitis QTL 3	4.1		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	10	27023535	61843633	Rat
2293680	Bss40	Bone structure and strength QTL 40	5.66	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	10	1	35730538	Rat
7387235	Uae41	Urinary albumin excretion QTL 41	5.26	0.1874	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	10	1	30004247	Rat
2298544	Neuinf9	Neuroinflammation QTL 9	4.6		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	10	19939207	64939207	Rat
61332	Eau3	Experimental allergic uveoretinitis QTL 3		0.004	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	10	18035782	63035782	Rat
10401803	Kidm50	Kidney mass QTL 50			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	10	922197	45922197	Rat
2317754	Glom25	Glomerulus QTL 25	3.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	2103708	47103708	Rat
2313081	Bss64	Bone structure and strength QTL 64	1.3	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	10	5893811	50893811	Rat
2298495	Eae23	Experimental allergic encephalomyelitis QTL 23	16.93		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis duration (CMO:0001424)	10	16175525	61175525	Rat
1598852	Anxrr19	Anxiety related response QTL 19	5.07		body movement coordination trait (VT:0005424)	number of rearing movements in an experimental apparatus (CMO:0001752)	10	18668419	63668419	Rat
2313087	Bmd80	Bone mineral density QTL 80	3.2	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	10	20110614	65110614	Rat
634327	Hc4	Hypercalciuria QTL 4	2.4		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	10	1	38832698	Rat
1581497	Esta1	Estrogen-induced thymic atrophy QTL 1			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	21833758	61843633	Rat
631531	Iresp2	Immunoglobin response QTL2	6.3		blood immunoglobulin E amount (VT:0002492)	serum immunoglobulin E level (CMO:0002101)	10	23422121	32490778	Rat
631530	Tls3	T-lymphoma susceptibility QTL 3	0	0.0001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	10	27587226	96099902	Rat
2313095	Bss62	Bone structure and strength QTL 62	1.5	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	5893811	50893811	Rat
631660	Hcar1	Hepatocarcinoma resistance QTL 1	3.4	0.0001	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	10	6661118	35509383	Rat
631532	Cm50	Cardiac mass QTL 50	6.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	10	18035782	63035782	Rat
2300171	Bmd58	Bone mineral density QTL 58	4.9	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	27443787	72443787	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
2293705	Bmd25	Bone mineral density QTL 25	7.1	0.0001	femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	10	27443787	72443787	Rat
2301967	Cm73	Cardiac mass QTL 73	4.55		heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	14991535	86964295	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14991535	107713808	Rat
2313104	Bss61	Bone structure and strength QTL 61	0.9	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	10	5893811	50893811	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6864618	96620484	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14991535	107556066	Rat
2293652	Bmd22	Bone mineral density QTL 22	4.9	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	10	27443787	72443787	Rat
2313055	Bw96	Body weight QTL 96	3.6	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	10	20110614	65110614	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	27023535	99451848	Rat

Markers in Region

D10Rat255

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	10	28,145,483 - 28,145,737 (+)	Marker Load Pipeline
mRatBN7.2	10	27,643,986 - 27,644,242 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	28,693,915 - 28,694,168	NCBI	Rnor6.0
Rnor_5.0	10	28,536,424 - 28,536,677	UniSTS	Rnor5.0
RGSC_v3.4	10	28,327,948 - 28,328,201	UniSTS	RGSC3.4
RGSC_v3.4	10	28,327,947 - 28,328,201	RGD	RGSC3.4
Celera	10	27,146,158 - 27,146,411	UniSTS
RGSC_v3.1	10	28,328,996 - 28,329,250	RGD
Cytogenetic Map	10	q21	UniSTS

BI292051

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	27,751,105 - 27,751,267 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	28,863,979 - 28,864,140	NCBI	Rnor6.0
Rnor_5.0	10	28,706,750 - 28,706,911	UniSTS	Rnor5.0
Celera	10	27,245,529 - 27,245,690	UniSTS
RH 3.4 Map	10	295.2	UniSTS
Cytogenetic Map	10	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
26	9	49	127	55	54	23	24	23	6	240	95	131	89	123	31	10	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001428743	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006220635	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006246129	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767637	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597619	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597620	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597621	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597622	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604034	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604035	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604036	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604037	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270024	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000029118 ⟹ ENSRNOP00000030760

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	27,910,295 - 28,251,450 (+)	Ensembl
mRatBN7.2 Ensembl	10	27,408,747 - 27,749,637 (+)	Ensembl
Rnor_6.0 Ensembl	10	28,449,335 - 28,864,255 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000104964 ⟹ ENSRNOP00000085790

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	28,139,625 - 28,251,450 (+)	Ensembl
mRatBN7.2 Ensembl	10	27,638,158 - 27,749,637 (+)	Ensembl

RefSeq Acc Id:

XM_017597619 ⟹ XP_017453108

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	27,996,729 - 28,252,801 (+)	NCBI
mRatBN7.2	10	27,495,207 - 27,751,313 (+)	NCBI
Rnor_6.0	10	28,547,465 - 28,862,423 (+)	NCBI

Sequence:

show sequence

GTGCCTGGTCCTAGAGGAATTCTCAGCTATTTGGATTTTACAAGTTGTTTTTCCTTTGGTAAAT
TTCTATGTCCAGAATTCTACTTTGTTATCTGGAAAAGATACCTAACTAAATATAAAGTTCACAA
TTACTAACCCAGCTCTTTTACTCTGTTGCTATGATAAACACCAATATCAAAAGCAACTTAGAGG
ACGAAAGGTTCTATCTGACCTCTATTTCAAGTTCTAGTCCGTCATTGAGGGAAGTCAGGATAGA
AACTCAAGAAGGAACTAATGTAGAAACCATGGAGGGATACTCCTTACTGGCTCACTTGTTCATG
GGCTTATACTCAGCTAGCTTTTTGACATTGTTTAGACCTACATTGGGATGGTGCTGCCCACAGT
GGTCTGGGCCCACCTTTGTTAACCATCAGTCAAGGCAATCTCTCGCAGACGTGATCACAGGCCA
ATGTGATTTGGATAATTCCTCAATTGAGGTTCTCTCTTGCCATGTGACTCGAGGTCACAACAAG
TTAACATAAAAAAATTAACCAATTCCTCAGCAATTATGGCATGAGATATTTGTTTCTTCCCATA
TCTTCTGAGTCCCAAACTCCTCTTGCAATCTCCAAGGTAGGCTTGTTGACTATTCTTCTTTATC
TGTTGTTTATGGGTCCATCAATACCTATCCATTATTCTAACAATTGACTTCCTTCATTACCCCA
TCTAGTTTGGTTAGAAGCAACTCAGCAAAAGGATCATACATGAATTGAAGCTATCATTAAACCC
ATAAATAATCCTGATTTTTTGTATGTCTGAAGTATGATATATTGGCCCCTCTCTTCAGATTTGA
TATAATCAGACAGTAATCAGCAGGAACTATGACTACTGCAGAATGACACTTCTGAAGCTTTGAG
AGCAAATTCATCACCCGCACACACATAAAAGTCACTGCTAAAAGTCTTTTTTTTTCCTTAAGAG
CTCTTGAAACCCAGCAACTGAATTCCATTCCAGGCCCCCAAATGAGAACAACAAGGTTATAATT
GTCCCACACTTAACTACATGCTCCAAACATAATGGGCAAAGTCATTTTTGTACCATGCATAGAG
AATGAAACCCCTTAGGAATTTCTATATGGCTAGCTCATTGATTGACAGAAAGGAGAAATGAATG
CATGAGCCACATCTAACAGTGATGCTACTCTCTCCATGTGGAGCCGAGAGGAGAACACAGCCTT
CACTGTTCTGGCCCAGGCCCCACACTCACAAGCTTGCCATTCTTCTCTCTTCACTCCTGGGTCT
GGTGAGGCAGCTCCTTGTCGCCTTTTGTTGCATTGGCTGTGGTTATTTCTTTCCTGTGTCTCTT
CTCTGAGTTACCAAATTGCTGTTAGCTTAAGGCCTTGCCTTGACATAATCAGAGAGATGAAAGA
TGCCATAGAAAAGAGAAAAACTTCAACCATGCTTTATGGCAGAGACTACACCACTCCCAAGGAC
TGTTTTCCATACCTTCTAATGGAGTCTGCTCGGTAGGGACAATCAGCTTTGCTGGCCTCATAGT
GGCAGGAAGATCATGACTGGCTGGAGAAACGTATCCCAGTGAAGGAAAGAGTCTGAATTGTAGA
CTGTTGTCACCTGATTCTGGAAATGACTTTCTCCCTGGACTTTTCTTGGCTCCGGTGGAAATGG
CGAAGTCAAAATGGCTTCTCCCAGTCCCCTTCAGAAACCACACCGCTGCTTTCTCCGGAGACAG
GCAGGCAGAGCTACAACCCAACAGAGCAACGGGTGGTGTACCCCAACAACAGTATGTGTCACCA
GGACTGGAAGAAGGTCTCCAGGAGGTACCCAGGCAACAGCATCTGTACAACCAAGTACACTCTC
CTCACCTTCCTGCCCCAGAATCTCTTTGAGCAGTTTCATAGGTGGGCCAACCTCTACTTCCTGT
TCCTGGTGATTCTGAACTGGATGCCCTCCATGGAAGTCTTCCACAGGGAAATCACCATGTTACC
ACTGGCCATTGTCCTGTTGGTCATCATGGTCAAAGATGGCACAGAAGACTTCAAGAGATATTGC
TTCGACAGAGAGATGAACAGTGCCAGCATTCAAATATATGAAAGAAAAGAACAAAGCTACATGC
AGAAGCGCTGGCAGGATGTGCGTGTGGGAGACTTCGTCCAGATGCGGTGCAATGAGATTGTCCC
AGCCGATATCCTGCTTCTCTTCTCCTCAGACCCCAGTGGGGTCTGCCATCTGGAAACTGCCAAC
TTGGATGGAGAGACCAACCTCAAGCAGAGGCGTGTTGTGAAGGGCTTCTCACAACAGGAGGTGC
AGTTCCAACCAGAGCACTTCCACAGTACCATCGTGTGTGAGAAGCCGAACAATCATCTCAGCAA
GTTTAAAGGGTACATGGAGCATCCTGATGAGACCAGGACTGGCTTTGGCAGTGAGAGTCTTCTG
CTCCGAGGCTGCACCATCCGAAACACCGAGGTGGCAGCAGGCATTGTCATCTATGCAGGTCATG
AGACAAAAGCCATGCTGAACAACAGTGGCCCACGCTACAAACGCAGCAAAATTGAGCGGCGCAT
CAACACAGATATCTTCTTCTGCATCGGCCTCCTCTTCCTCATGTGCCTCATTGGAGCTGTAGGC
CACAGTCTCTGGAATGGTACCTTTAAAGAGCATCCTCCCTTCGATGTGCCAGATGCCGATGGGA
ACTTCCTTTCTCCTGCCCTTGGAGGCTTCTATATGTTCCTCACAATGATCATACTACTCCAGGT
GTTGATCCCGATCTCCTTGTATGTGTCCATTGAGCTGGTAAAGCTTGGGCAAGTGTTCCTCCTT
CACAACGACCTTGACCTATATGATGAAGAAACTGATTTGTCCATTCAATGTCGAGCCCTAAACA
TTACAGAGGACCTGGGACAGATCCAGTACATCTTCTCTGACAAGACAGGAACCCTGACAGAAAA
CAAGATGGTGTTCCGCCGTTGTACCATTGTGGGCAATGAATATTGTCACCAAGAAAATGCCAAG
CGACTGGAGATGCCAAAGGAGCTGGACTCAGATGGTGAGGAGTGGACCCAATACCAATGTCTGT
CCTTCCCACCTAGATGGACCCAGGGCCCAGCAACAATCAGAAGCCAAGGAGGTGCCCAGCCTCT
AAGGAGATGCCACAGTGCCCGGGTTCCTATCCAGAGCCACTCCCGACAAAGATCCGTGGGGCGC
TGGGAAACCTCGCAACCTCCTGTGGCCTTCAGTAGCTCAATAGAAAAAGATGTGACTCCTGACA
AAAACCTCCTGAGTAAGGTGCGAGACGCTGCCCTGTGGCTAGAGACCTTGGATACCAGACCTGC
CAAGCCTTCGCACTCCACCACTGCCTCCATTGCTGACTTCTTTCTCGCCTTAACCATCTGCAAC
TCTGTCATGGTGTCCACAACCACTGAGCCCAGAAAGAGGGTCACCACTCCACCAGCCAACAAGG
CTCTGGGGACTTCCTTAGAAAAGATTCAACATCTCTTCCAGAGGCTGAAGCTTTTGAGTCTCAG
CCAATCATTCTCATCCACAGCTCCCTCTGACACAGATCTAGGAGAAAGTCTGGGGCCCAATGTG
CCCACCATAGACGCCGATGAGAAAGATGATGCATCTGTGTGCAGCGGGGACTGCTCCACTGACG
GTGGCTACAGGAGCAGCACGTGGGAACAGGGTGACAACCTGGGGTCTGAATCAGGCACTTCTCT
GGAGGAGGGTCTGGAGGCCCCAGCTCTCAGCCTTGATGGACCAGAGCTGTGCTACGAGGCTGAA
AGCCCTGATGAGGCAGCCCTAGTCCATGCAGCCCGGGCCTACAGTTTCACACTAGTGTCTAGGA
CACCTGAGCAGGTGACTGTGCGTCTGCCCCAGGGCATCTGCCTCACTTTTGACCTCCTTTTCAC
CCTGGGCTTTGACTCTGTCCGGAAGAGAATGTCAGTAGTGGTGAGGCACCCACTGACAGGCGAG
ATCGTCGTCTACACCAAGGGTGCGGACTCAGTTATCATGGACCTGCTGGAAGATCCAGCCTGTG
GGAATGATATTGATGTGGAAAAGAAGCTGAAGAGAATCCGAGCCCGGACCCAAAAACATCTGGA
CTTGTATGCAAGAGATGGCCTTCGAACCCTGTGCATTGCTAAGAAGGTTGTAAATGAAGAGGAC
TTCCAGAGGTGGGCCAGTTTCCGGCGTGAGGCTGAGGCATCCCTTGACAACCGAGAGGAGCTTC
TAATGGAGACAGCCCAGCACCTGGAGAATCGCCTCACTTTACTCGGAGCCACTGGGATTGAAGA
TCGACTCCAAGAAGGGGTTCCAGATACCATCGCTGCACTGCGGGAGGCTGGAATCCAGCTCTGG
GTTTTGACAGGAGATAAACAGGAGACAGCCGTCAATGTCGCACATTCCTGCAAACTGCTGGATC
AGGCTGACACCGTGTACTCCATTAACACAGAGAATCAGGAAACCTGCGAGTCCATCCTCAACTG
TGCATTGGAAGACGTAAAGAGATTTCATGAACCACAGCAGCCAGCCAGAAAACTCTGTGGGTAC
TGCATTCCATCTAAGAAGCCATCTGTTAACTTGGGAGCTATGGCTCCTGAAATTGGACTGGTCA
TTGATGGGAAGACACTGAATGCAATTTTCCAGGGAAAGCTGGAAAATAAATTCCTGGAATTGAC
TCAGTACTGTCGGTCTGTCCTGTGTTGCCGCTCCACCCCACTGCAGAAGAGTATGATTGTCAAG
CTGGTGCGAGACAAGTTGAGCGTCATGACTCTTTCCATAGGGGACGGAGCCAATGACGTAAGCA
TGATTCAAGCTGCTGACATTGGCATTGGAATATCTGGGCAGGAAGGCATGCAGGCTGTCATGTC
CAGTGACTTCGCCATTGCCCGCTTCAGCCACCTCAAGAAGCTCCTGCTTGTGCATGGCCACTGG
TGTTACTCGCGCCTGGCCAGGATGGTAGTGTATTACTTCTATAAGAACGTGTGCTATGTCAACC
TGCTGTTCTGGTACCAGTTCTTCTGTGGTTTCTCGGGCTCCACCATGATCGATTATTGGCAGAT
GATATTCTTCAATCTCTTCTTCACGTCCTTGCCACCCATCGTCTTTGGAATCCTCGATAAAGAT
GTCTCTGCAGAAACACTCCTGGCATTGCCTGAATTATACAAGAGTGGCCAGAACTCTGAGTGCT
ACAATCTGCCAACATTCTGGGTTTCCATGGCTGATGCATTCTACCAGAGCCTCATCTGTTTCTT
TATCCCCTACCTGACCTACCGAGGTTCAGACATAGATGTCTTTACTTTTGGAACACCAATCAAC
ACCATCTCACTCACCACCATCCTCTTGCACCAGGCAATGGAAATGAAGACATGGACTGTCCTCC
ATGGCCTTGTCCTCCTCGGCAGCTTTTTGATGTACTTCGTGGTTTCCCTAATATACAACGCCAC
TTGCGTCACCTGCAACAGCCCTACCAATCCCTACTGGTTGATGGAAAGGCAGCTCTCAGACCCC
ATGTTCTACCTCACCTGTCTCCTCACTCCAGTCGTGGCTCTTCTACCAAGGTATTTTCTCCTGT
CTCTACAAGGGACATATGGGAAGTCTCTAATCTCAAAAGCTCAGAAAATTGACAAGCTGCCCAT
AGACAAAAGAAACCTTGAGATCCAGAATTGGAGAAGCAAACAGAGGCCTACCCCTGCTTCTGCT
TCTGCCGCAGCTCCTGCCACTGGCACTGTCCACACTCAGCCCCCGTGTTGTCCAGTACCACCTG
AAGCCCAGCAGGACTTTGGAGCCAGTACCTCAAAGAGCTCTAGCCCTCCCAGACAGAAGCAAGT
CGAAGACTGGGTTCTCCAAGGTCCAAGGTGCAGTAGAGAGCATTCTAAGGATGACACGTGCTCA
CGAGATACCTTGGCTAAACTTTCTTCTGGAGAATGCCTTCTGGACCCAAACAGGACAGTGGCTC
CCACTGCCTACTCCAGGGGTCAGAAGGATGCATCTCGACACTCAAGCAAAGGAAGCCATCGCAG
ATCTCAGAGTTCACTGACCATATGAGGGTCTACAGAAATCAGAGACGGATATAAACGCAGAAGA
GATGACTCAATCACTGAGCAATCACTCTGTAGAGAGATGACTGACAGTTGTATCAATTCTCCTC
ACCAGGGTTGACTGCCTTCAGGAAATGCTGGCCCCTAAAGGGTTGGAGAAAAACTTGACTGCTG
GGCCAGTTGACTCTGGCTTTATTCTGCTGCCAGGAAGCACATCTTGAGAACGATAGTCTGGATG
CAGATATGGTTTTGCTGCATTGTGTTCTCACAGCCCAAGCATGCCCTTATGAGCTTCTAAGTAA
AGCCGTGACCTAATGCAACTGGGCAGTACGTATCCACGCCTCCAACCAGTATTATAGACCTTGG
GAATGTATCAGAATGTGGAAGTTACTAGGTTTGTCAAACCATCACTTCACCTCAGGAGTTCAAG
CTTCAGAAGAGACCTGCACACACTAGGGCTTCATCTCAAGATCACTACAACACCATCTCTTCCA
CACACAGAATGGGTTTGCTTCTTTCGTCTACTCCATTGGTTCTCAACCTTCCTAATGATGCAAC
CCTTTAATACACTTCTTCATGTTCTGGTGATGCCCCCC

hide sequence

RefSeq Acc Id:

XM_063270024 ⟹ XP_063126094

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	28,139,554 - 28,252,801 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001415672	(Get FASTA)	NCBI Sequence Viewer
	XP_017453108	(Get FASTA)	NCBI Sequence Viewer
	XP_063126094	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM04125	(Get FASTA)	NCBI Sequence Viewer
	EDM04126	(Get FASTA)	NCBI Sequence Viewer
	EDM04127	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000030760
	ENSRNOP00000030760.4
	ENSRNOP00000085790
	ENSRNOP00000085790.1

RefSeq Acc Id:

XP_017453108 ⟸ XM_017597619

- Peptide Label:

isoform X1

- Sequence:

show sequence

MTFSLDFSWLRWKWRSQNGFSQSPSETTPLLSPETGRQSYNPTEQRVVYPNNSMCHQDWKKVSR
RYPGNSICTTKYTLLTFLPQNLFEQFHRWANLYFLFLVILNWMPSMEVFHREITMLPLAIVLLV
IMVKDGTEDFKRYCFDREMNSASIQIYERKEQSYMQKRWQDVRVGDFVQMRCNEIVPADILLLF
SSDPSGVCHLETANLDGETNLKQRRVVKGFSQQEVQFQPEHFHSTIVCEKPNNHLSKFKGYMEH
PDETRTGFGSESLLLRGCTIRNTEVAAGIVIYAGHETKAMLNNSGPRYKRSKIERRINTDIFFC
IGLLFLMCLIGAVGHSLWNGTFKEHPPFDVPDADGNFLSPALGGFYMFLTMIILLQVLIPISLY
VSIELVKLGQVFLLHNDLDLYDEETDLSIQCRALNITEDLGQIQYIFSDKTGTLTENKMVFRRC
TIVGNEYCHQENAKRLEMPKELDSDGEEWTQYQCLSFPPRWTQGPATIRSQGGAQPLRRCHSAR
VPIQSHSRQRSVGRWETSQPPVAFSSSIEKDVTPDKNLLSKVRDAALWLETLDTRPAKPSHSTT
ASIADFFLALTICNSVMVSTTTEPRKRVTTPPANKALGTSLEKIQHLFQRLKLLSLSQSFSSTA
PSDTDLGESLGPNVPTIDADEKDDASVCSGDCSTDGGYRSSTWEQGDNLGSESGTSLEEGLEAP
ALSLDGPELCYEAESPDEAALVHAARAYSFTLVSRTPEQVTVRLPQGICLTFDLLFTLGFDSVR
KRMSVVVRHPLTGEIVVYTKGADSVIMDLLEDPACGNDIDVEKKLKRIRARTQKHLDLYARDGL
RTLCIAKKVVNEEDFQRWASFRREAEASLDNREELLMETAQHLENRLTLLGATGIEDRLQEGVP
DTIAALREAGIQLWVLTGDKQETAVNVAHSCKLLDQADTVYSINTENQETCESILNCALEDVKR
FHEPQQPARKLCGYCIPSKKPSVNLGAMAPEIGLVIDGKTLNAIFQGKLENKFLELTQYCRSVL
CCRSTPLQKSMIVKLVRDKLSVMTLSIGDGANDVSMIQAADIGIGISGQEGMQAVMSSDFAIAR
FSHLKKLLLVHGHWCYSRLARMVVYYFYKNVCYVNLLFWYQFFCGFSGSTMIDYWQMIFFNLFF
TSLPPIVFGILDKDVSAETLLALPELYKSGQNSECYNLPTFWVSMADAFYQSLICFFIPYLTYR
GSDIDVFTFGTPINTISLTTILLHQAMEMKTWTVLHGLVLLGSFLMYFVVSLIYNATCVTCNSP
TNPYWLMERQLSDPMFYLTCLLTPVVALLPRYFLLSLQGTYGKSLISKAQKIDKLPIDKRNLEI
QNWRSKQRPTPASASAAAPATGTVHTQPPCCPVPPEAQQDFGASTSKSSSPPRQKQVEDWVLQG
PRCSREHSKDDTCSRDTLAKLSSGECLLDPNRTVAPTAYSRGQKDASRHSSKGSHRRSQSSLTI

hide sequence

Ensembl Acc Id:

ENSRNOP00000030760 ⟸ ENSRNOT00000029118

Ensembl Acc Id:

ENSRNOP00000085790 ⟸ ENSRNOT00000104964

RefSeq Acc Id:	XP_063126094 ⟸ XM_063270024
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6GEB1 (UniProtKB/TrEMBL)

Protein Domains

P-type ATPase C-terminal P-type ATPase N-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A4W5-F1-model_v2	AlphaFold	D4A4W5	1-1472	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1565126	AgrOrtholog
BioCyc Gene	G2FUF-25469	BioCyc
Ensembl Genes	ENSRNOG00000003781	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000029118	ENTREZGENE
	ENSRNOT00000029118.7	UniProtKB/TrEMBL
	ENSRNOT00000104964	ENTREZGENE
	ENSRNOT00000104964.2	UniProtKB/TrEMBL
Gene3D-CATH	3.40.1110.10	UniProtKB/TrEMBL
	3.40.50.1000	UniProtKB/TrEMBL
	Calcium-transporting ATPase, cytoplasmic transduction domain A	UniProtKB/TrEMBL
	Calcium-transporting ATPase, transmembrane domain	UniProtKB/TrEMBL
InterPro	ATPase_P-typ_ATPase-assoc-dom	UniProtKB/TrEMBL
	ATPase_P-typ_cyto_domN	UniProtKB/TrEMBL
	ATPase_P-typ_ion-transptr	UniProtKB/TrEMBL
	ATPase_P-typ_P_site	UniProtKB/TrEMBL
	ATPase_P-typ_Plipid-transl	UniProtKB/TrEMBL
	ATPase_P-typ_TM_dom	UniProtKB/TrEMBL
	HAD-like_sf	UniProtKB/TrEMBL
	HAD_sf	UniProtKB/TrEMBL
	P-type_ATPase_N	UniProtKB/TrEMBL
	P_typ_ATPase_c	UniProtKB/TrEMBL
	P_typ_ATPase_HD_dom	UniProtKB/TrEMBL
KEGG Report	rno:303056	UniProtKB/TrEMBL
NCBI Gene	303056	ENTREZGENE
PANTHER	PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE	UniProtKB/TrEMBL
	PTHR24092:SF79	UniProtKB/TrEMBL
Pfam	Cation_ATPase	UniProtKB/TrEMBL
	Hydrolase	UniProtKB/TrEMBL
	PhoLip_ATPase_C	UniProtKB/TrEMBL
	PhoLip_ATPase_N	UniProtKB/TrEMBL
PhenoGen	Atp10b	PhenoGen
PRINTS	CATATPASE	UniProtKB/TrEMBL
PROSITE	ATPASE_E1_E2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000003781	RatGTEx
Superfamily-SCOP	ATPase_cation_domN	UniProtKB/TrEMBL
	HAD-like_dom	UniProtKB/TrEMBL
	SSF81653	UniProtKB/TrEMBL
	SSF81665	UniProtKB/TrEMBL
UniProt	A0A8I6GEB1	ENTREZGENE, UniProtKB/TrEMBL
	D4A4W5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2023-08-22	Atp10b	ATPase phospholipid transporting 10B	Atp10b	ATPase phospholipid transporting 10B (putative)	Name changed	629549	APPROVED
2016-02-17	Atp10b	ATPase phospholipid transporting 10B (putative)	Atp10b	ATPase, class V, type 10B	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-06	Atp10b	ATPase, class V, type 10B	RGD1565126_predicted	similar to novel protein (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1565126_predicted	similar to novel protein (predicted)	LOC303056	similar to novel protein	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC303056	similar to novel protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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