Spem2 (SPEM family member 2) - Rat Genome Database

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Gene: Spem2 (SPEM family member 2) Rattus norvegicus
Analyze
Symbol: Spem2
Name: SPEM family member 2
RGD ID: 1565061
Description: Predicted to be located in membrane. Orthologous to human SPEM2 (SPEM family member 2); INTERACTS WITH bisphenol A; 3-isobutyl-1-methyl-7H-xanthine (ortholog); 4,4'-sulfonyldiphenol (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical protein LOC497938; LOC497938; similar to RIKEN cDNA 4933402P03; uncharacterized protein C17orf74 homolog; uncharacterized protein SPEM2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81055,035,892 - 55,037,790 (-)NCBIGRCr8
mRatBN7.21054,537,168 - 54,539,026 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1054,537,174 - 54,539,058 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1059,199,677 - 59,201,528 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01058,688,243 - 58,690,094 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01054,195,894 - 54,197,745 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01056,424,164 - 56,426,012 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1056,424,164 - 56,426,012 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01056,169,247 - 56,171,081 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41056,638,639 - 56,640,472 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1053,691,427 - 53,693,278 (-)NCBICelera
Cytogenetic Map10q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Comparative Map Data
Spem2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81055,035,892 - 55,037,790 (-)NCBIGRCr8
mRatBN7.21054,537,168 - 54,539,026 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1054,537,174 - 54,539,058 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1059,199,677 - 59,201,528 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01058,688,243 - 58,690,094 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01054,195,894 - 54,197,745 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01056,424,164 - 56,426,012 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1056,424,164 - 56,426,012 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01056,169,247 - 56,171,081 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41056,638,639 - 56,640,472 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1053,691,427 - 53,693,278 (-)NCBICelera
Cytogenetic Map10q24NCBI
SPEM2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38177,425,616 - 7,427,568 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl177,425,616 - 7,427,568 (+)EnsemblGRCh38hg38GRCh38
GRCh37177,328,935 - 7,330,887 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36177,269,659 - 7,271,611 (+)NCBINCBI36Build 36hg18NCBI36
Celera177,354,821 - 7,356,773 (+)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef177,222,961 - 7,224,913 (+)NCBIHuRef
CHM1_1177,338,027 - 7,339,979 (+)NCBICHM1_1
T2T-CHM13v2.0177,329,669 - 7,331,621 (+)NCBIT2T-CHM13v2.0
Spem2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391169,707,386 - 69,709,313 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1169,707,392 - 69,709,291 (-)EnsemblGRCm39 Ensembl
GRCm381169,816,560 - 69,818,487 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,816,566 - 69,818,465 (-)EnsemblGRCm38mm10GRCm38
MGSCv371169,630,068 - 69,631,942 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361169,632,761 - 69,634,635 (-)NCBIMGSCv36mm8
Celera1177,377,527 - 77,379,401 (-)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1142.89NCBI
Spem2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554679,498,541 - 9,500,466 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554679,493,708 - 9,500,466 (-)NCBIChiLan1.0ChiLan1.0
SPEM2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21915,019,413 - 15,024,166 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11716,985,222 - 16,989,970 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0177,458,605 - 7,461,545 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1177,445,958 - 7,447,907 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl177,449,092 - 7,453,041 (+)Ensemblpanpan1.1panPan2
PanPan1.1 Ensembl177,445,958 - 7,447,907 (+)Ensemblpanpan1.1panPan2
SPEM2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1532,357,302 - 32,359,197 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl532,357,336 - 32,359,129 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha532,495,333 - 32,497,293 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0532,462,905 - 32,464,865 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl532,462,999 - 32,464,797 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1532,428,139 - 32,430,099 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0532,386,871 - 32,388,831 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0532,564,139 - 32,566,099 (+)NCBIUU_Cfam_GSD_1.0
Spem2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560247,232,222 - 47,236,485 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936595708,799 - 710,604 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936595708,694 - 710,810 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPEM2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1252,728,826 - 52,730,822 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11252,729,001 - 52,731,131 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21255,021,617 - 55,023,538 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SPEM2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1166,800,970 - 6,803,726 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl166,801,835 - 6,803,655 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605914,604,873 - 14,607,257 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61441Btemp1Thermal response to stress QTL 14body temperature trait (VT:0005535)core body temperature (CMO:0001036)103539245763642539Rat
1549846Scl47Serum cholesterol level QTL 473.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)105057470795574707Rat
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat
1578779Tcas10Tongue tumor susceptibility QTL 103.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)103129743976297439Rat
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101527595560275955Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
2293669Bmd33Bone mineral density QTL 334.50.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)104944455181709989Rat
631552Vetf2Vascular elastic tissue fragility QTL 24.50.0002aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)104114263386142633Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
631557Bp136Blood pressure QTL 1360.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)103063205375632053Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
2293679Bmd30Bone mineral density QTL 303.50.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)104944455181709989Rat
1578762Toxo1Toxoplasma gondii resistance QTL 1brain integrity trait (VT:0010579)percentage of study population displaying Toxoplasma gondii brain cysts at a point in time (CMO:0002028)105220003059378278Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
70164Bw21Body weight QTL 214.360.00005body mass (VT:0001259)body weight (CMO:0000012)105379749498952626Rat
61463Bp12Blood pressure QTL 126.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104133325886333258Rat
8694173Bw149Body weight QTL 1494.380.001body mass (VT:0001259)body weight gain (CMO:0000420)104444169989441699Rat
2300218Hpcl2Hepatic cholesterol level QTL 2liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)104502965095600334Rat
1554317Bmd4Bone mineral density QTL 49.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)101981604299406971Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1053797385107211142Rat
1598852Anxrr19Anxiety related response QTL 195.07body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)101816784163167841Rat
1581497Esta1Estrogen-induced thymic atrophy QTL 1thymus mass (VT:0004954)thymus wet weight (CMO:0000855)102132980561345413Rat
724527Bp148Blood pressure QTL 1480.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102845313673453136Rat
1358897Stresp6Stress response QTL 64.170.022blood norepinephrine amount (VT:0005663)plasma norepinephrine level (CMO:0001010)103539226764155584Rat
1331762Rf40Renal function QTL 403.873kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)102929950464155584Rat
2300171Bmd58Bone mineral density QTL 584.90.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)102694462871944628Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)14232313287323132Rat
9590310Scort19Serum corticosterone level QTL 196.30.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9589030Epfw9Epididymal fat weight QTL 919.240.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)104444169989441699Rat
10402859Bp381Blood pressure QTL 3810.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
2293652Bmd22Bone mineral density QTL 224.90.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)104944455181709989Rat
70198BpQTLcluster9Blood pressure QTL cluster 92.94arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)104232313287323132Rat
1359017Hrtrt21Heart rate QTL 212.4heart pumping trait (VT:2000009)heart rate (CMO:0000002)105177294096772940Rat
2306787Ean3Experimental allergic neuritis QTL 33.1nervous system integrity trait (VT:0010566)body weight loss (CMO:0001399)105379738566979128Rat
6893352Bw100Body weight QTL 1000.330.6body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102242750090627625Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1051770177107211142Rat
1354585Eae18aExperimental allergic encephalomyelitis QTL 18a7.50.0004nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)105379738558445852Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
1354587Kidm21Kidney mass QTL 213.3kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)101502851360430477Rat
6893350Bw99Body weight QTL 990.870.16body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
2317043Aia7Adjuvant induced arthritis QTL 73.82joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)103756507982565079Rat
70224Eae3Experimental allergic encephalomyelitis QTL 34.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)102652195761345413Rat
2317042Aia20Adjuvant induced arthritis QTL 203.38joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)103756507982565079Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
2313087Bmd80Bone mineral density QTL 803.20.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)101960648364606483Rat
70364Bp72Blood pressure QTL 72arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105112110096121100Rat
631530Tls3T-lymphoma susceptibility QTL 300.0001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)105177461295600334Rat
631535Cm51Cardiac mass QTL 513heart mass (VT:0007028)calculated heart weight (CMO:0000073)105178628291669536Rat
1576319Cia29Collagen induced arthritis QTL 29joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103397392178973921Rat
8552805Bw145Body weight QTL 1452.2body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)104194452678307017Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
2293705Bmd25Bone mineral density QTL 257.10.0001femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)104944455181709989Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040035094102359817Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
9590268Scort13Serum corticosterone level QTL 133.260.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
7207811Bmd90Bone mineral density QTL 905.2femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)104944455181709989Rat
1576311Pia26Pristane induced arthritis QTL 26joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103122402675632053Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
7411614Foco18Food consumption QTL 180.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)104444169989441699Rat
631547Bp87Blood pressure QTL 874.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104736947092369470Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
6893342Cm78Cardiac mass QTL 780.10.88heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)104287676679813922Rat
2292441Bp308Blood pressure QTL 308arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
2313055Bw96Body weight QTL 963.60.0001body mass (VT:0001259)body weight (CMO:0000012)101960648364606483Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102652195798952741Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 7
Low 3 9 1 1
Below cutoff 17 6 9 6 3 5 18 10 7 9 3

Sequence


RefSeq Acc Id: ENSRNOT00000084068   ⟹   ENSRNOP00000071516
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1054,537,174 - 54,539,058 (-)Ensembl
Rnor_6.0 Ensembl1056,424,168 - 56,426,012 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000092506   ⟹   ENSRNOP00000075824
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1054,537,174 - 54,539,019 (-)Ensembl
Rnor_6.0 Ensembl1056,424,164 - 56,426,012 (-)Ensembl
RefSeq Acc Id: NM_001017475   ⟹   NP_001017475
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81055,035,892 - 55,037,743 (-)NCBI
mRatBN7.21054,537,168 - 54,539,019 (-)NCBI
Rnor_6.01056,424,164 - 56,426,012 (-)NCBI
Rnor_5.01056,169,247 - 56,171,081 (-)NCBI
RGSC_v3.41056,638,639 - 56,640,472 (-)RGD
Celera1053,691,427 - 53,693,278 (-)RGD
Sequence:
RefSeq Acc Id: XM_039086583   ⟹   XP_038942511
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81055,035,892 - 55,037,788 (-)NCBI
mRatBN7.21054,537,168 - 54,539,003 (-)NCBI
RefSeq Acc Id: XM_039086584   ⟹   XP_038942512
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81055,035,892 - 55,037,774 (-)NCBI
mRatBN7.21054,537,168 - 54,539,026 (-)NCBI
RefSeq Acc Id: XM_039086586   ⟹   XP_038942514
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81055,035,892 - 55,037,790 (-)NCBI
mRatBN7.21054,537,874 - 54,539,003 (-)NCBI
RefSeq Acc Id: XM_063269626   ⟹   XP_063125696
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81055,035,892 - 55,037,560 (-)NCBI
RefSeq Acc Id: XM_063269628   ⟹   XP_063125698
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81055,035,892 - 55,037,775 (-)NCBI
RefSeq Acc Id: NP_001017475   ⟸   NM_001017475
- UniProtKB: Q68FV4 (UniProtKB/Swiss-Prot),   A6HFU0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000075824   ⟸   ENSRNOT00000092506
RefSeq Acc Id: ENSRNOP00000071516   ⟸   ENSRNOT00000084068
RefSeq Acc Id: XP_038942512   ⟸   XM_039086584
- Peptide Label: isoform X2
- UniProtKB: A6HFU0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942511   ⟸   XM_039086583
- Peptide Label: isoform X1
- UniProtKB: A6HFU0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942514   ⟸   XM_039086586
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063125698   ⟸   XM_063269628
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063125696   ⟸   XM_063269626
- Peptide Label: isoform X3
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q68FV4-F1-model_v2 AlphaFold Q68FV4 1-504 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697325
Promoter ID:EPDNEW_R7850
Type:multiple initiation site
Name:LOC497938_1
Description:similar to RIKEN cDNA 4933402P03
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01056,426,074 - 56,426,134EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565061 AgrOrtholog
BioCyc Gene G2FUF-24513 BioCyc
Ensembl Genes ENSRNOG00000058939 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055029066 UniProtKB/Swiss-Prot
  ENSRNOG00060031932 UniProtKB/Swiss-Prot
  ENSRNOG00065029338 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000084068.2 UniProtKB/TrEMBL
  ENSRNOT00000092506 UniProtKB/TrEMBL
  ENSRNOT00000092506.2 UniProtKB/Swiss-Prot
  ENSRNOT00055050330 UniProtKB/Swiss-Prot
  ENSRNOT00060055362 UniProtKB/Swiss-Prot
  ENSRNOT00065050677 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7134515 IMAGE-MGC_LOAD
InterPro SPEM1_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:497938 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94435 IMAGE-MGC_LOAD
NCBI Gene 497938 ENTREZGENE
PANTHER SPEM FAMILY MEMBER 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPERMATID MATURATION PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Spem1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Spem2 PhenoGen
RatGTEx ENSRNOG00000058939 RatGTEx
  ENSRNOG00055029066 RatGTEx
  ENSRNOG00060031932 RatGTEx
  ENSRNOG00065029338 RatGTEx
UniProt A0A0U1RRV3_RAT UniProtKB/TrEMBL
  A0A8L2R610_RAT UniProtKB/TrEMBL
  A6HFU0 ENTREZGENE, UniProtKB/TrEMBL
  Q68FV4 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-09-05 Spem2  SPEM family member 2  LOC497938  similar to RIKEN cDNA 4933402P03  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 LOC497938  similar to RIKEN cDNA 4933402P03      Symbol and Name status set to provisional 70820 PROVISIONAL