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Gene: Crip3 (cysteine-rich protein 3) Rattus norvegicus

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Symbol:

Crip3

Name:

cysteine-rich protein 3

RGD ID:

1565018

Description:

Predicted to enable metal ion binding activity. Predicted to act upstream of or within T cell proliferation. Predicted to be located in cytoplasm. Orthologous to human CRIP3 (cysteine rich protein 3); INTERACTS WITH bisphenol A; fipronil; gentamycin.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC501100; RGD1565018; similar to thymus LIM protein TLP-B

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CRIP3 (cysteine rich protein 3)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Crip3 (cysteine-rich protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Crip3 (cysteine rich protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CRIP3 (cysteine rich protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CRIP3 (cysteine rich protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Crip3 (cysteine rich protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CRIP3 (cysteine rich protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CRIP3 (cysteine rich protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Crip3 (cysteine rich protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	CRIP2 (cysteine rich protein 2)	HGNC	OrthoDB
Homo sapiens (human):	RPL17 (ribosomal protein L17)	HGNC	OMA
Homo sapiens (human):	RPL17-C18orf32 (RPL17-C18orf32 readthrough)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Crip3 (cysteine-rich protein 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	CRIP3 (cysteine rich protein 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	crip3 (cysteine-rich protein 3)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	crip3	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	22,052,039 - 22,054,933 (-)	NCBI		GRCr8
mRatBN7.2	9	14,554,450 - 14,557,344 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	14,554,450 - 14,557,302 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	23,137,647 - 23,140,497 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	28,201,068 - 28,203,910 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	26,501,026 - 26,503,876 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	16,931,862 - 16,934,714 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	16,931,862 - 16,934,714 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	15,828,909 - 15,831,761 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	9,940,850 - 9,943,702 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	9	12,301,636 - 12,304,478 (-)	NCBI		Celera
Cytogenetic Map	9	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

infantile Refsum disease (ISO)

Zellweger syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17alpha-ethynylestradiol (ISO)

aflatoxin B1 (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP)

bisphenol F (ISO)

carbon nanotube (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

dorsomorphin (ISO)

fipronil (EXP)

gentamycin (EXP)

leflunomide (ISO)

N-Nitrosopyrrolidine (ISO)

paracetamol (ISO)

pentanal (ISO)

phenylmercury acetate (ISO)

potassium dichromate (ISO)

propanal (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tetraphene (ISO)

thimerosal (ISO)

trichloroethene (EXP)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

T cell proliferation (ISO)

Cellular Component

cytoplasm (ISO)

nucleus (ISO)

Molecular Function

metal ion binding (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11713292

Genomics

Comparative Map Data

Crip3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	22,052,039 - 22,054,933 (-)	NCBI		GRCr8
mRatBN7.2	9	14,554,450 - 14,557,344 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	14,554,450 - 14,557,302 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	23,137,647 - 23,140,497 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	28,201,068 - 28,203,910 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	26,501,026 - 26,503,876 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	16,931,862 - 16,934,714 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	16,931,862 - 16,934,714 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	15,828,909 - 15,831,761 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	9,940,850 - 9,943,702 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	9	12,301,636 - 12,304,478 (-)	NCBI		Celera
Cytogenetic Map	9	q12	NCBI

CRIP3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	43,305,472 - 43,308,826 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	43,299,710 - 43,308,826 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	43,273,210 - 43,276,564 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	43,381,189 - 43,384,508 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	43,381,681 - 43,384,508	NCBI
Celera	6	44,824,971 - 44,828,289 (-)	NCBI		Celera
Cytogenetic Map	6	p21.1	NCBI
HuRef	6	42,991,716 - 42,995,034 (-)	NCBI		HuRef
CHM1_1	6	43,276,157 - 43,279,475 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	43,134,412 - 43,137,765 (-)	NCBI		T2T-CHM13v2.0

Crip3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	46,735,058 - 46,742,706 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	46,739,852 - 46,742,702 (+)	Ensembl		GRCm39 Ensembl
GRCm38	17	46,428,195 - 46,431,780 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	46,428,926 - 46,431,776 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	46,565,891 - 46,568,720 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	45,892,131 - 45,894,960 (+)	NCBI		MGSCv36	mm8
Celera	17	49,863,793 - 49,866,622 (+)	NCBI		Celera
Cytogenetic Map	17	C	NCBI
cM Map	17	22.9	NCBI

Crip3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955437	9,210,901 - 9,215,471 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955437	9,210,901 - 9,215,471 (-)	NCBI	ChiLan1.0	ChiLan1.0

CRIP3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	57,805,606 - 57,818,391 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	53,675,445 - 53,688,226 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	42,891,980 - 42,901,666 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	44,183,770 - 44,193,629 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	44,189,327 - 44,193,629 (-)	Ensembl	panpan1.1		panPan2

CRIP3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	11,788,401 - 11,791,350 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	11,788,721 - 11,791,258 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	11,825,349 - 11,869,118 (-)	NCBI		Dog10K_Boxer_Tasha
Dog10K_Boxer_Tasha	12	11,839,006 - 11,845,369 (-)	NCBI		Dog10K_Boxer_Tasha
Dog10K_Boxer_Tasha	12	11,815,098 - 11,825,331 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	12,272,165 - 12,326,612 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	12,272,500 - 12,275,037 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
ROS_Cfam_1.0 Ensembl	12	12,297,256 - 12,326,612 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	11,797,905 - 11,808,137 (-)	NCBI		UMICH_Zoey_3.1
UMICH_Zoey_3.1	12	11,808,155 - 11,852,127 (-)	NCBI		UMICH_Zoey_3.1
UMICH_Zoey_3.1	12	11,821,842 - 11,828,225 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	11,882,106 - 11,936,580 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	11,977,198 - 12,031,780 (-)	NCBI		UU_Cfam_GSD_1.0

Crip3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	47,285,863 - 47,289,736 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936476	16,671,284 - 16,674,406 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936476	16,671,284 - 16,674,406 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CRIP3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	38,334,833 - 38,338,246 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	38,334,616 - 38,338,626 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	43,835,172 - 43,858,530 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CRIP3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	28,844,793 - 28,848,181 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666044	43,366,782 - 43,369,877 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Crip3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	16,273,242 - 16,275,400 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624754	16,269,979 - 16,275,755 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Crip3
9 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	46
Count of miRNA genes:	44
Interacting mature miRNAs:	44
Transcripts:	ENSRNOT00000061503
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631211	Bw4	Body weight QTL4	5.31		retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	9	5109826	50109826	Rat
2303559	Gluco54	Glucose level QTL 54	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	9	1254084	46254084	Rat
7411609	Foco16	Food consumption QTL 16	25.6	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	8952560	53952560	Rat
61450	Ciaa3	CIA Autoantibody QTL 3	6.5		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	9	7954720	22071169	Rat
9589055	Scfw5	Subcutaneous fat weight QTL 5	5.55	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	9	1	37999212	Rat
1641911	Alcrsp13	Alcohol response QTL 13			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	1	43718459	Rat
1354650	Despr5	Despair related QTL 5	4.01	0.0017	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	9	1254084	46254084	Rat
1300124	Cm4	Cardiac mass QTL 4	3.55		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	9	1	40594091	Rat
61425	Cia15	Collagen induced arthritis QTL 15	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	9	5109826	42921101	Rat
70226	Eae4	Experimental allergic encephalomyelitis QTL 4			nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	9	1	25661317	Rat
9589158	Gluco65	Glucose level QTL 65	6.82	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	9	1	37999212	Rat
10054125	Srcrt7	Stress Responsive Cort QTL 7	3.33	0.0011	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	9	1	87073594	Rat
1600365	Mcs20	Mammary carcinoma susceptibility QTL 20	3		mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	9	13533770	42791750	Rat
11353947	Bp392	Blood pressure QTL 392			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	7283252	52283252	Rat
7411592	Foco8	Food consumption QTL 8	7.4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	1	37999212	Rat
1331757	Cdexp1	CD45RC expression in CD8 T cells QTL 1	4.3		CD8-positive T cell quantity (VT:0008077)	blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)	9	1024537	67509080	Rat
1298088	Edpm11	Estrogen-dependent pituitary mass QTL 11	2.5		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	9	1	43718459	Rat
9589133	Insul26	Insulin level QTL 26	17.96	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	9	8952560	53952560	Rat

Markers in Region

D9Uwm3

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	9	22,052,144 - 22,052,243 (+)	Marker Load Pipeline
mRatBN7.2	9	14,554,555 - 14,554,654 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	16,931,968 - 16,932,066	NCBI	Rnor6.0
Rnor_5.0	9	15,829,015 - 15,829,113	UniSTS	Rnor5.0
RGSC_v3.4	9	9,940,955 - 9,941,054	RGD	RGSC3.4
RGSC_v3.4	9	9,940,956 - 9,941,054	UniSTS	RGSC3.4
RGSC_v3.1	9	9,938,277 - 9,938,376	RGD
Celera	9	12,301,742 - 12,301,830	UniSTS
Cytogenetic Map	9	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	10	27	112	64	64	33	25	33	6	164	71	93	43	56	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109303	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039084062	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039084063	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473987	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000061503 ⟹ ENSRNOP00000058221

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	14,554,450 - 14,557,302 (-)	Ensembl
Rnor_6.0 Ensembl	9	16,931,862 - 16,934,714 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097550 ⟹ ENSRNOP00000091049

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	14,554,879 - 14,557,302 (-)	Ensembl

RefSeq Acc Id:

NM_001109303 ⟹ NP_001102773

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	22,052,039 - 22,054,891 (-)	NCBI
mRatBN7.2	9	14,554,450 - 14,557,302 (-)	NCBI
Rnor_6.0	9	16,931,862 - 16,934,714 (-)	NCBI
Rnor_5.0	9	15,828,909 - 15,831,761 (-)	NCBI
RGSC_v3.4	9	9,940,850 - 9,943,702 (-)	RGD
Celera	9	12,301,636 - 12,304,478 (-)	RGD

Sequence:

show sequence

TGAAGAACCATGAGCTGGACTTGTCCGCGTTGCCAGCAACCCGTTTACTTTGCTGAGAAAGTGA
GCTCCGTAGGCAAGCACTGGCACCGTTTCTGCCTGAAATGCGAGCGCTGTCACAGCATCTTGTC
CCCCGGCGGGCATGCAGAGCACAACGGGAGGCCATACTGCCACAAGCCTTGCTATGGGGCTCTC
TTTGGACCTAGAGGGGTCAACATTGGTGGTGTGGGCTGCTATCTCTACAACCCCCCAAGTCCCC
CTCCTGCCAGCAGTATTTCCCTCAGCCCCAGCAACTTCAGCCCCCCCAGGCCAAGGACTGGCCT
CCCCCGGGCCAAGAAAAGCCCTCCCTACTTGAAGACATTCACTGGGGAGACGTCACTATGCCCT
GGATGTGGGGATCCTGTCTATTTCGCTGAGAAGGTGATGTCTTTGGGCAGAAATTGGCACCGAC
CGTGCCTGAGGTGCCAACGTTGCAGGAAGACCCTGACTGCTGGGAGTCACGCGGAGCATGATGG
CATGCCTTACTGCCACATCCCCTGCTATGGCTACCTGTTTGGCCCCAAAGGTGTGAACATTGGC
GATGTGGGCTGCTACATCTATGACCCAGTGGACATAAGACCCAAATGAGCCACTCACGGGAGTG
ACAACCTCATGCCAGCTTTCCACCTTTCCTCCGAAGTCCTCTGGAAGCTCCGGAATTCTCTAGT
CCTTTGGGGAGGAAGCAGGCGACATCCTGGGGGCTGGGACCTAGGTGTAGGCTCTGTGGTAGAC
CTGAGTCTAGACTGTCTCTCCCACTTCTGTGTTTCCCCATTCCTAACTGGAGGCACACACACAC
ACACACACACACACACACACACACACACACGCTTAGAATGGTGGTTGCCTGGGCTCCCAGTCCT
TCTCTCAGCAATGCTTGAGTTTCATAAAGTGTATTCATAAAGGTCGTCGAGCTCTCTGGATTCC
GTAATAAAATGTCAATCCCCATACCTT

hide sequence

RefSeq Acc Id:

XM_039084062 ⟹ XP_038939990

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	22,052,043 - 22,054,933 (-)	NCBI
mRatBN7.2	9	14,554,454 - 14,557,344 (-)	NCBI

RefSeq Acc Id:

XM_039084063 ⟹ XP_038939991

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	22,052,043 - 22,054,929 (-)	NCBI
mRatBN7.2	9	14,554,454 - 14,557,340 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102773	(Get FASTA)	NCBI Sequence Viewer
	XP_038939990	(Get FASTA)	NCBI Sequence Viewer
	XP_038939991	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM18821	(Get FASTA)	NCBI Sequence Viewer
	EDM18822	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000058221
	ENSRNOP00000058221.2
	ENSRNOP00000091049.1

RefSeq Acc Id:

NP_001102773 ⟸ NM_001109303

- UniProtKB:

D3ZNQ0 (UniProtKB/TrEMBL), A6JIR0 (UniProtKB/TrEMBL), A6JIR1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSWTCPRCQQPVYFAEKVSSVGKHWHRFCLKCERCHSILSPGGHAEHNGRPYCHKPCYGALFGP
RGVNIGGVGCYLYNPPSPPPASSISLSPSNFSPPRPRTGLPRAKKSPPYLKTFTGETSLCPGCG
DPVYFAEKVMSLGRNWHRPCLRCQRCRKTLTAGSHAEHDGMPYCHIPCYGYLFGPKGVNIGDVG
CYIYDPVDIRPK

hide sequence

Ensembl Acc Id:

ENSRNOP00000058221 ⟸ ENSRNOT00000061503

RefSeq Acc Id:	XP_038939990 ⟸ XM_039084062
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038939991 ⟸ XM_039084063
- Peptide Label:	isoform X1

Ensembl Acc Id:

ENSRNOP00000091049 ⟸ ENSRNOT00000097550

Protein Domains

LIM zinc-binding

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZNQ0-F1-model_v2	AlphaFold	D3ZNQ0	1-204	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696522

Promoter ID:

EPDNEW_R7047

Type:

single initiation site

Name:

Crip3_1

Description:

cysteine-rich protein 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	16,934,800 - 16,934,860	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1565018	AgrOrtholog
BioCyc Gene	G2FUF-28225	BioCyc
Ensembl Genes	ENSRNOG00000018613	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000061503	ENTREZGENE
	ENSRNOT00000061503.3	UniProtKB/TrEMBL
	ENSRNOT00000097550.1	UniProtKB/TrEMBL
Gene3D-CATH	Cysteine Rich Protein	UniProtKB/TrEMBL
InterPro	Znf_LIM	UniProtKB/TrEMBL
KEGG Report	rno:501100	UniProtKB/TrEMBL
NCBI Gene	501100	ENTREZGENE
PANTHER	CYSTEINE-RICH PROTEIN 3	UniProtKB/TrEMBL
	CYSTEINE-RICH PROTEIN CRIP FAMILY MEMBER	UniProtKB/TrEMBL
Pfam	LIM	UniProtKB/TrEMBL
PhenoGen	Crip3	PhenoGen
PROSITE	LIM_DOMAIN_1	UniProtKB/TrEMBL
	LIM_DOMAIN_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000018613	RatGTEx
SMART	LIM	UniProtKB/TrEMBL
Superfamily-SCOP	Glucocorticoid receptor-like (DNA-binding domain)	UniProtKB/TrEMBL
UniProt	A0A8I6AEM2_RAT	UniProtKB/TrEMBL
	A6JIR0	ENTREZGENE, UniProtKB/TrEMBL
	A6JIR1	ENTREZGENE, UniProtKB/TrEMBL
	D3ZNQ0	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-07	Crip3	cysteine-rich protein 3	RGD1565018_predicted	similar to thymus LIM protein TLP-B (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1565018_predicted	similar to thymus LIM protein TLP-B (predicted)	LOC501100	similar to thymus LIM protein TLP-B	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC501100	similar to thymus LIM protein TLP-B			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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