Nr6a1 (nuclear receptor subfamily 6, group A, member 1) - Rat Genome Database

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Gene: Nr6a1 (nuclear receptor subfamily 6, group A, member 1) Rattus norvegicus
Analyze
Symbol: Nr6a1
Name: nuclear receptor subfamily 6, group A, member 1
RGD ID: 1564740
Description: Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and protein homodimerization activity. Predicted to be involved in gamete generation and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within negative regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of transcription regulator complex. Orthologous to human NR6A1 (nuclear receptor subfamily 6 group A member 1); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Gcnf; germ cell nuclear factor; nuclear receptor subfamily 6 group A member 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8342,904,832 - 43,094,622 (-)NCBIGRCr8
mRatBN7.2322,495,109 - 22,683,132 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl322,496,943 - 22,683,131 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0323,029,222 - 23,218,050 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl323,033,775 - 23,066,658 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0328,253,752 - 28,311,777 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4318,533,072 - 18,564,668 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera320,928,332 - 20,987,223 (-)NCBICelera
Cytogenetic Map3q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7835709   PMID:7854358   PMID:9025060   PMID:9099702   PMID:11702949   PMID:12381721   PMID:15064830   PMID:16166633   PMID:26546462  


Genomics

Comparative Map Data
Nr6a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8342,904,832 - 43,094,622 (-)NCBIGRCr8
mRatBN7.2322,495,109 - 22,683,132 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl322,496,943 - 22,683,131 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0323,029,222 - 23,218,050 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl323,033,775 - 23,066,658 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0328,253,752 - 28,311,777 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4318,533,072 - 18,564,668 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera320,928,332 - 20,987,223 (-)NCBICelera
Cytogenetic Map3q12NCBI
NR6A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389124,517,275 - 124,771,311 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9124,517,275 - 124,771,311 (-)EnsemblGRCh38hg38GRCh38
GRCh379127,279,554 - 127,533,590 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369126,324,524 - 126,573,397 (-)NCBINCBI36Build 36hg18NCBI36
Build 349124,364,256 - 124,613,130NCBI
Celera997,931,920 - 98,181,465 (-)NCBICelera
Cytogenetic Map9q33.3NCBI
HuRef996,892,079 - 97,146,297 (-)NCBIHuRef
CHM1_19127,428,491 - 127,682,467 (-)NCBICHM1_1
T2T-CHM13v2.09136,715,509 - 136,969,568 (-)NCBIT2T-CHM13v2.0
Nr6a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39238,613,381 - 38,816,464 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl238,613,382 - 38,817,700 (-)EnsemblGRCm39 Ensembl
GRCm38238,723,369 - 38,926,461 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl238,723,370 - 38,927,688 (-)EnsemblGRCm38mm10GRCm38
MGSCv37238,578,894 - 38,781,981 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36238,545,379 - 38,749,697 (-)NCBIMGSCv36mm8
Celera240,447,561 - 40,650,237 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map224.42NCBI
Nr6a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554193,425,790 - 3,619,285 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554193,425,406 - 3,624,315 (+)NCBIChiLan1.0ChiLan1.0
NR6A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21114,584,131 - 14,838,171 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1914,586,313 - 14,840,517 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0995,641,303 - 95,892,569 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19124,159,277 - 124,236,706 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9124,164,707 - 124,372,104 (-)Ensemblpanpan1.1panPan2
Nr6a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947193,008,930 - 193,226,426 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648712,775,197 - 12,995,091 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648712,775,864 - 12,994,927 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NR6A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1265,322,039 - 265,370,026 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11265,320,597 - 265,570,941 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21299,188,178 - 299,395,773 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.21299,074,852 - 299,106,574 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NR6A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11213,373,445 - 13,626,234 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660792,448,515 - 2,704,496 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nr6a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476010,391,881 - 10,590,430 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476010,383,216 - 10,594,919 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nr6a1
985 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:345
Count of miRNA genes:102
Interacting mature miRNAs:105
Transcripts:ENSRNOT00000018751, ENSRNOT00000072113, ENSRNOT00000074794
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)3127494778Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3131158234Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)3133230976Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)diastolic blood pressure (CMO:0000005)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)pulse pressure (CMO:0000292)3133278763Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3133278763Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)3136847613Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3138710544Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3139874793Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)3822719433703538Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)3865816227494778Rat
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)3865816227494778Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)31077870450302886Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)31077870450302886Rat
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1558650Cm48Cardiac mass QTL 4840.0001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)31077882330356773Rat
1558657Cm43Cardiac mass QTL 436.60.0000000293heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31500542276927699Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)31695470861954708Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)heart rate (CMO:0000002)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)heart rate (CMO:0000002)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)body weight (CMO:0000012)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)body weight (CMO:0000012)31737470335528639Rat
2325840Bp345Blood pressure QTL 3450.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31831145428441896Rat
731172Bp151Blood pressure QTL 1510.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31831145447233430Rat
12879849Bw180Body weight QTL 1800.037body mass (VT:0001259)body weight (CMO:0000012)31831145447233430Rat
12879850Cm91Cardiac mass QTL 910.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)31831145447233430Rat
12879851Cm92Cardiac mass QTL 920.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)31831145447233430Rat
12879852Cm93Cardiac mass QTL 930.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)31831145447233430Rat
12879853Am5Aortic mass QTL 50.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)31831145447233430Rat
12879854Kidm63Kidney mass QTL 630.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)31831145447233430Rat
10450804Scl70Serum cholesterol level QTL 704.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32071409065714090Rat
10450794Scl69Serum cholesterol level QTL 696.30.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32071409065714090Rat

Markers in Region
RH143052  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2322,504,702 - 22,504,984 (+)MAPPERmRatBN7.2
Rnor_6.0323,038,816 - 23,039,097NCBIRnor6.0
Rnor_5.0328,263,343 - 28,263,624UniSTSRnor5.0
RGSC_v3.4318,538,113 - 18,538,394UniSTSRGSC3.4
Celera320,937,926 - 20,938,207UniSTS
RH 3.4 Map3236.4UniSTS
Cytogenetic Map3q11UniSTS
RH138284  
Rat AssemblyChrPosition (strand)SourceJBrowse
RH 3.4 Map3237.31UniSTS
Cytogenetic Map3q11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 4 13
Low 3 10 57 41 19 41 8 11 70 35 28 11 8
Below cutoff 30

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001100861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AJ783965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000018751   ⟹   ENSRNOP00000018751
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl322,496,943 - 22,552,877 (-)Ensembl
Rnor_6.0 Ensembl323,033,775 - 23,066,658 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000110680   ⟹   ENSRNOP00000076447
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl322,496,943 - 22,683,131 (-)Ensembl
RefSeq Acc Id: NM_001100861   ⟹   NP_001094331
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8342,904,832 - 43,092,837 (-)NCBI
RefSeq Acc Id: XM_039106241   ⟹   XP_038962169
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8342,904,832 - 43,094,622 (-)NCBI
mRatBN7.2322,495,109 - 22,683,132 (-)NCBI
RefSeq Acc Id: XM_039106242   ⟹   XP_038962170
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8342,904,832 - 43,094,622 (-)NCBI
mRatBN7.2322,495,109 - 22,683,132 (-)NCBI
RefSeq Acc Id: XM_039106243   ⟹   XP_038962171
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8342,904,832 - 43,094,622 (-)NCBI
mRatBN7.2322,495,109 - 22,683,132 (-)NCBI
RefSeq Acc Id: XM_039106244   ⟹   XP_038962172
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8342,904,832 - 43,094,622 (-)NCBI
mRatBN7.2322,495,109 - 22,683,132 (-)NCBI
RefSeq Acc Id: XM_039106245   ⟹   XP_038962173
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8342,904,832 - 43,094,622 (-)NCBI
mRatBN7.2322,495,109 - 22,683,132 (-)NCBI
RefSeq Acc Id: XM_039106246   ⟹   XP_038962174
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8342,904,832 - 42,972,193 (-)NCBI
mRatBN7.2322,495,109 - 22,554,275 (-)NCBI
RefSeq Acc Id: XM_063284078   ⟹   XP_063140148
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8342,914,303 - 43,094,622 (-)NCBI
RefSeq Acc Id: XM_063284079   ⟹   XP_063140149
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8342,904,832 - 42,972,196 (-)NCBI
RefSeq Acc Id: ENSRNOP00000018751   ⟸   ENSRNOT00000018751
RefSeq Acc Id: XP_038962171   ⟸   XM_039106243
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038962173   ⟸   XM_039106245
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038962172   ⟸   XM_039106244
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038962170   ⟸   XM_039106242
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038962169   ⟸   XM_039106241
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038962174   ⟸   XM_039106246
- Peptide Label: isoform X7
- UniProtKB: E9PSV7 (UniProtKB/TrEMBL),   A6JEV3 (UniProtKB/TrEMBL),   A6JEV2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000076447   ⟸   ENSRNOT00000110680
RefSeq Acc Id: NP_001094331   ⟸   NM_001100861
- UniProtKB: A0A8I5Y5U9 (UniProtKB/TrEMBL),   A6JEV2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140149   ⟸   XM_063284079
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063140148   ⟸   XM_063284078
- Peptide Label: isoform X6
Protein Domains
NR LBD   Nuclear receptor

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E9PSV7-F1-model_v2 AlphaFold E9PSV7 1-438 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564740 AgrOrtholog
BioCyc Gene G2FUF-49905 BioCyc
Ensembl Genes ENSRNOG00000013232 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000018751.8 UniProtKB/TrEMBL
  ENSRNOT00000110680.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.565.10 UniProtKB/TrEMBL
  3.30.50.10 UniProtKB/TrEMBL
InterPro NHR-like_dom_sf UniProtKB/TrEMBL
  Nucl_hrmn_rcpt_lig-bd UniProtKB/TrEMBL
  Nuclear_hrmn_rcpt UniProtKB/TrEMBL
  Znf_hrmn_rcpt UniProtKB/TrEMBL
  Znf_NHR/GATA UniProtKB/TrEMBL
NCBI Gene 362125 ENTREZGENE
PANTHER KNIRPS-RELATED PROTEIN-RELATED UniProtKB/TrEMBL
  NUCLEAR RECEPTOR SUBFAMILY 6 GROUP A MEMBER 1 UniProtKB/TrEMBL
Pfam Hormone_recep UniProtKB/TrEMBL
  zf-C4 UniProtKB/TrEMBL
PhenoGen Nr6a1 PhenoGen
PRINTS STRDHORMONER UniProtKB/TrEMBL
  STROIDFINGER UniProtKB/TrEMBL
PROSITE NR_LBD UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_1 UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000013232 RatGTEx
SMART HOLI UniProtKB/TrEMBL
  ZnF_C4 UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/TrEMBL
  SSF48508 UniProtKB/TrEMBL
UniProt A0A8I5Y5U9 ENTREZGENE, UniProtKB/TrEMBL
  A6JEV2 ENTREZGENE, UniProtKB/TrEMBL
  A6JEV3 ENTREZGENE, UniProtKB/TrEMBL
  E9PSV7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Nr6a1  nuclear receptor subfamily 6, group A, member 1      Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 Nr6a1  nuclear receptor subfamily 6, group A, member 1      Symbol and Name status set to provisional 70820 PROVISIONAL