MGC116121 (similar to RIKEN cDNA 2700062C07)

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Gene: MGC116121 (similar to RIKEN cDNA 2700062C07) Rattus norvegicus

Analyze

Symbol:

MGC116121

Name:

similar to RIKEN cDNA 2700062C07

RGD ID:

1564673

Description:

Orthologous to human C18orf21 (chromosome 18 open reading frame 21); INTERACTS WITH bisphenol A; coumarin (ortholog); cyclosporin A (ortholog).

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

hypothetical protein LOC498830; UPF0711 protein C18orf21 homolog

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	18	15,779,349 - 15,786,772 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	15,779,368 - 15,787,894 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	18	15,966,709 - 15,974,144 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	16,749,423 - 16,756,858 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	16,037,969 - 16,045,403 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	16,438,091 - 16,445,514 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	16,438,091 - 16,445,505 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	16,197,063 - 16,204,486 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	16,268,204 - 16,275,627 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	18	15,709,382 - 15,716,806 (+)	NCBI		Celera
Cytogenetic Map	18	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

intellectual disability (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

bisphenol A (EXP,ISO)

coumarin (ISO)

cyclosporin A (ISO)

disodium selenite (ISO)

ethyl methanesulfonate (ISO)

methyl methanesulfonate (ISO)

resveratrol (ISO)

sodium dodecyl sulfate (ISO)

testosterone (ISO)

valproic acid (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
2.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:15489334

Genomics

Comparative Map Data

MGC116121
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	18	15,779,349 - 15,786,772 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	15,779,368 - 15,787,894 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	18	15,966,709 - 15,974,144 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	16,749,423 - 16,756,858 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	16,037,969 - 16,045,403 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	16,438,091 - 16,445,514 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	16,438,091 - 16,445,505 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	16,197,063 - 16,204,486 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	16,268,204 - 16,275,627 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	18	15,709,382 - 15,716,806 (+)	NCBI		Celera
Cytogenetic Map	18	p12	NCBI

C18orf21
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	18	35,972,679 - 35,979,278 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	18	35,972,625 - 35,979,286 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	18	33,552,642 - 33,559,241 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	18	31,806,586 - 31,813,239 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	18	31,806,745 - 31,813,238	NCBI
Celera	18	30,360,467 - 30,367,120 (+)	NCBI		Celera
Cytogenetic Map	18	q12.2	NCBI
HuRef	18	30,411,520 - 30,418,182 (+)	NCBI		HuRef
CHM1_1	18	33,479,583 - 33,486,267 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	18	36,164,179 - 36,170,780 (+)	NCBI		T2T-CHM13v2.0

2700062C07Rik
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	24,603,928 - 24,610,824 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	24,603,907 - 24,610,855 (+)	Ensembl		GRCm39 Ensembl
GRCm38	18	24,470,871 - 24,477,767 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	24,470,850 - 24,477,798 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	18	24,629,372 - 24,636,268 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	18	24,613,880 - 24,620,777 (+)	NCBI		MGSCv36	mm8
Celera	18	24,959,344 - 24,966,234 (+)	NCBI		Celera
Cytogenetic Map	18	A2	NCBI
cM Map	18	13.18	NCBI

LOC102007956
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955402	22,572,551 - 22,580,207 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955402	22,573,130 - 22,580,293 (+)	NCBI	ChiLan1.0	ChiLan1.0

C18H18orf21
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	18	39,060,402 - 39,095,244 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	18	29,224,549 - 29,231,544 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	18	32,782,908 - 32,789,866 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	18	32,782,908 - 32,789,866 (+)	Ensembl	panpan1.1		panPan2

C7H18orf21
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	54,202,934 - 54,210,601 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	54,202,934 - 54,210,676 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	53,628,881 - 53,636,506 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	54,173,872 - 54,181,509 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	54,173,872 - 54,181,590 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	53,856,673 - 53,864,338 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	53,880,031 - 53,887,691 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	54,172,705 - 54,180,337 (-)	NCBI		UU_Cfam_GSD_1.0

CUNH18orf21
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404944	49,940,150 - 49,951,896 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936517	9,271,699 - 9,279,299 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936517	9,272,089 - 9,279,282 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

C6H18orf21
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	119,735,712 - 119,745,317 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	119,735,388 - 119,745,729 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	112,261,171 - 112,271,346 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CUNH18orf21
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	18	44,823,095 - 44,829,830 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	18	44,821,636 - 44,830,172 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666050	19,284,209 - 19,291,618 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CUNH18orf21
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624779	10,280,964 - 10,288,017 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624779	10,280,815 - 10,287,611 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in MGC116121
27 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	167
Count of miRNA genes:	120
Interacting mature miRNAs:	132
Transcripts:	ENSRNOT00000020856
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
8552968	Pigfal19	Plasma insulin-like growth factor 1 level QTL 19	11.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	18	1	25758124	Rat
9590248	Scort10	Serum corticosterone level QTL 10	19.71	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	18	1	25758124	Rat
2312598	Bp340	Blood pressure QTL 340		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	1	30558703	Rat
2300180	Bmd67	Bone mineral density QTL 67	4.8	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	18	1	34291613	Rat
2293661	Bss50	Bone structure and strength QTL 50	4.64	0.0003	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	18	1	34291613	Rat
61388	Bp2	Blood pressure QTL 2	3.23		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	1	35374722	Rat
9589153	Insul31	Insulin level QTL 31	7.15	0.05	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	18	1	42547119	Rat
1641910	Colcr3	Colorectal carcinoma resistance QTL 3	5.02	0.000007	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor surface area measurement (CMO:0002078)	18	2249477	22066430	Rat
1641910	Colcr3	Colorectal carcinoma resistance QTL 3	5.02	0.000007	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor number (CMO:0002076)	18	2249477	22066430	Rat
2299160	Iddm35	Insulin dependent diabetes mellitus QTL 35	2.79		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	18	4207941	60377792	Rat
2312568	Glom21	Glomerulus QTL 21	2	0.005	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	18	5185858	40503530	Rat
2293708	Bss46	Bone structure and strength QTL 46	8.8	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	18	11791518	63636873	Rat
1578661	Bss20	Bone structure and strength QTL 20	3.7		femur morphology trait (VT:0000559)	femoral neck cross-sectional area (CMO:0001697)	18	11791518	83218561	Rat
1578667	Bss21	Bone structure and strength QTL 21	3.5		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	18	11791518	83218561	Rat
61382	Bp46	Blood pressure QTL 46	18.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	11941791	31393320	Rat
631264	Scl22	Serum cholesterol level QTL 22	6.2		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	18	11941791	31393320	Rat
12904690	Cm129	Cardiac mass QTL 129		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	18	11944273	26548295	Rat
12904689	Cm128	Cardiac mass QTL 128		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	18	11944273	26548295	Rat
12904693	Am20	Aortic mass QTL 20		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	18	11944273	26548295	Rat
12904695	Kidm73	Kidney mass QTL 73		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	18	11944273	26548295	Rat
12904691	Cm130	Cardiac mass QTL 130		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	18	11944273	26548295	Rat
12904680	Bw189	Body weight QTL 189		0.019	body mass (VT:0001259)	body weight (CMO:0000012)	18	11944273	26548295	Rat
2301410	Bp317	Blood pressure QTL 317		0.004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	11944273	26548295	Rat
1331781	Scl28	Serum cholesterol level QTL 28	3.995		blood HDL cholesterol amount (VT:0000184)	serum high density lipoprotein cholesterol level (CMO:0000361)	18	11944299	24797117	Rat
1331766	Bp236	Blood pressure QTL 236	3.022		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	11944299	31359530	Rat
61375	Bp41	Blood pressure QTL 41	2.4		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	18	11944299	41122201	Rat
1331753	Bp231	Blood pressure QTL 231	3.643		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	11944299	52293055	Rat
1358358	Sradr6	Stress Responsive Adrenal Weight QTL 6	2.49		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	18	11944299	59330563	Rat
6903359	Bp355	Blood pressure QTL 355	3.6		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	11944544	59796478	Rat
2313082	Bss85	Bone structure and strength QTL 85	0.8	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	18	14951337	59951337	Rat

Markers in Region

RH130088

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	15,787,034 - 15,787,253 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	16,445,777 - 16,445,995	NCBI	Rnor6.0
Rnor_5.0	18	16,204,749 - 16,204,967	UniSTS	Rnor5.0
RGSC_v3.4	18	16,275,890 - 16,276,108	UniSTS	RGSC3.4
Celera	18	15,717,069 - 15,717,287	UniSTS
RH 3.4 Map	18	183.2	UniSTS
Cytogenetic Map	18	p12	UniSTS

RH132116

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	15,786,367 - 15,786,557 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	16,445,110 - 16,445,299	NCBI	Rnor6.0
Rnor_5.0	18	16,204,082 - 16,204,271	UniSTS	Rnor5.0
RGSC_v3.4	18	16,275,223 - 16,275,412	UniSTS	RGSC3.4
Celera	18	15,716,402 - 15,716,591	UniSTS
RH 3.4 Map	18	192.6	UniSTS
Cytogenetic Map	18	p12	UniSTS

BF389632

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	15,777,505 - 15,777,633 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	16,436,252 - 16,436,379	NCBI	Rnor6.0
Rnor_5.0	18	16,195,224 - 16,195,351	UniSTS	Rnor5.0
RGSC_v3.4	18	16,266,365 - 16,266,492	UniSTS	RGSC3.4
Celera	18	15,707,553 - 15,707,680	UniSTS
RH 3.4 Map	18	192.4	UniSTS
Cytogenetic Map	18	p12	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	26	35	21	18	21			74	32	34	11
Low		17	22	20	1	20	8	11		3	7		8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001024905	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC097984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000299	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000020856 ⟹ ENSRNOP00000020856

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	15,779,418 - 15,787,894 (+)	Ensembl
Rnor_6.0 Ensembl	18	16,438,091 - 16,445,505 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000104187 ⟹ ENSRNOP00000092030

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	15,780,792 - 15,787,892 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000118134 ⟹ ENSRNOP00000078731

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	15,779,368 - 15,787,892 (+)	Ensembl

RefSeq Acc Id:

NM_001024905 ⟹ NP_001020076

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	15,779,349 - 15,786,772 (+)	NCBI
Rnor_6.0	18	16,438,091 - 16,445,514 (+)	NCBI
Rnor_5.0	18	16,197,063 - 16,204,486 (+)	NCBI
RGSC_v3.4	18	16,268,204 - 16,275,627 (+)	RGD
Celera	18	15,709,382 - 15,716,806 (+)	RGD

Sequence:

show sequence

GGATGGTTACACTGAGAAAGCCGACTTCCGGCGTGGCGTTCAATCGCAGCGTTTGGGCGACTGT
GCTCTGGAGCAATGCGGCAGAAGTATTATATTGAAGCGGCTGCTCGGGGTCTGGTGGGAAGCTG
CCCTGGCCAGGCCCGCTACCTCCTGTGGGCCTACAGTTCGACACACGAGGATAACAGCACTTTT
CAGGAAACATGTCCACACTGCTTCCAATTGTTGGTTCTGGATAATTCTAGAGTGCGCCTCAAAC
CCAAAGCCAAATTGACACCAAAGATACAGAAACTTCTTAATCGAGAAGCAAGAAATTATACACT
CAGTTTTAAAGAAACAAAGCTGTTGAGAAAGTACAGAGACTCCGCAAGTGTGCTGCTGATTACC
TGCAGAACATGCAACAGAACGGTGAGACACCACGGTAAGAGTAGAAGCTTCCTGTCGGCACTGA
GGAGCAGCCGTGCTGCCAGTGCTGCAAGCAAAGCCAGCCCCAAGACGCCAAAGAGAGCGGCTGC
AGGCTCTACAAACATCAGTCAGAGTGTGCATGGCTCCAAAGGCAGGAGCCCCTCCTCGACCGTC
AGAACACCTACATCTGGACAGTCAACACCCATTTGCTCCTCAAGGAATGGGAGCAAAAGAAAGA
AACACTTCTCTCAACTAAAAGCACTGCTAAGTCAGAGTGCATCTGACAAGAACCCAACGCTAGA
CTTCAGGCACTTCTTATCTTCTCTGTGAAGAGAATGGCCTCTGAAAGAAGGAACTGTCTAGTGC
AGCTTCTGAAATGGAAGTTAACAGCTTTTGTCCTCTGTGAGAAGCAAGCTGTTCTCGCCATCCT
TCGGTGCTTAGGGGAAACACCTCATTAAATTGAGCAACTTGTGCCTCCCTGGGTGAATGCGAAG
ATCAAAAAGTAAATGAGCACAGGTGGAGGTGCTGCTGCTGCTGCCAGGCCTACAGCCTGTATTT
CATCTCCAGGACCGGACCAATGGAGCAGAAAGAATCCTGTTCTACAGGTTGTGCTCTGAGCTCC
ACACGAGTGCCCCTCACAGAAGATGAATAAATGTAATAAAGGGTTTTATAAACTAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA

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Protein Sequences


Protein RefSeqs	NP_001020076	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH97984	(Get FASTA)	NCBI Sequence Viewer
	EDL76136	(Get FASTA)	NCBI Sequence Viewer
	EDL76137	(Get FASTA)	NCBI Sequence Viewer
	Q4V7D8	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001020076 ⟸ NM_001024905

- UniProtKB:

Q4V7D8 (UniProtKB/Swiss-Prot), A6J2K4 (UniProtKB/TrEMBL), A0A8I6ACW9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MRQKYYIEAAARGLVGSCPGQARYLLWAYSSTHEDNSTFQETCPHCFQLLVLDNSRVRLKPKAK
LTPKIQKLLNREARNYTLSFKETKLLRKYRDSASVLLITCRTCNRTVRHHGKSRSFLSALRSSR
AASAASKASPKTPKRAAAGSTNISQSVHGSKGRSPSSTVRTPTSGQSTPICSSRNGSKRKKHFS
QLKALLSQSASDKNPTLDFRHFLSSL

hide sequence

RefSeq Acc Id:

ENSRNOP00000020856 ⟸ ENSRNOT00000020856

RefSeq Acc Id:

ENSRNOP00000078731 ⟸ ENSRNOT00000118134

RefSeq Acc Id:

ENSRNOP00000092030 ⟸ ENSRNOT00000104187

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q4V7D8-F1-model_v2	AlphaFold	Q4V7D8	1-218	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1564673	AgrOrtholog
BioCyc Gene	G2FUF-8151	BioCyc
Ensembl Genes	ENSRNOG00000015546	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000020856	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOP00000078731.1	UniProtKB/TrEMBL
	ENSRNOP00000092030.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000020856	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOT00000104187.1	UniProtKB/TrEMBL
	ENSRNOT00000118134.1	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7444421	IMAGE-MGC_LOAD
InterPro	DUF4674	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:498830	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:116121	IMAGE-MGC_LOAD
NCBI Gene	498830	ENTREZGENE
PANTHER	PTHR31402	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	UPF0711 PROTEIN C18ORF21	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	DUF4674	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	MGC116121	PhenoGen
UniProt	A0A8I5ZLC9_RAT	UniProtKB/TrEMBL
	A0A8I6ACW9	ENTREZGENE, UniProtKB/TrEMBL
	A6J2K4	ENTREZGENE, UniProtKB/TrEMBL
	A6J2K5_RAT	UniProtKB/TrEMBL
	CR021_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-02-09	MGC116121	similar to RIKEN cDNA 2700062C07			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar