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Gene: Sybu (syntabulin) Rattus norvegicus

Analyze

Symbol:

Sybu

Name:

syntabulin

RGD ID:

1564335

Description:

Enables microtubule binding activity. Involved in several processes, including axonal transport; positive regulation of insulin secretion involved in cellular response to glucose stimulus; and regulation of synaptic activity. Acts upstream of or within regulation of insulin secretion involved in cellular response to glucose stimulus. Located in dense body; microtubule; and vesicle. Orthologous to human SYBU (syntabulin); PARTICIPATES IN mitochondria transport pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Golgi-localized protein; Golsyn; LOC500865; Ocsyn; RGD1564335; similar to RIKEN cDNA 5730410E15 gene; syntabulin (syntaxin-interacting)

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SYBU (syntabulin)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Sybu (syntabulin (syntaxin-interacting))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Sybu (syntabulin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SYBU (syntabulin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SYBU (syntabulin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Sybu (syntabulin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SYBU (syntabulin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SYBU (syntabulin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Sybu (syntabulin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Sybu (syntabulin (syntaxin-interacting))	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	SYBU (syntabulin)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	sybu (syntabulin (syntaxin-interacting))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	sybu	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	77,731,662 - 77,833,413 (-)	NCBI		GRCr8
mRatBN7.2	7	75,847,000 - 75,948,919 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	75,847,003 - 75,948,828 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	7	83,600,614 - 83,670,121 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	83,600,617 - 83,670,356 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	83,615,445 - 83,685,901 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	80,551,448 - 80,636,458 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	7	72,816,778 - 72,887,484 (-)	NCBI		Celera
Cytogenetic Map	7	q31	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-methylcholine (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (EXP,ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (ISO)

avobenzone (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP)

C60 fullerene (EXP)

cadmium dichloride (ISO)

calcitriol (ISO)

cantharidin (ISO)

carbon nanotube (ISO)

cisplatin (ISO)

cocaine (EXP)

copper(II) chloride (ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

DDE (ISO)

deoxynivalenol (ISO)

dichloroacetic acid (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

endosulfan (EXP)

ethanol (ISO)

formaldehyde (ISO)

fulvestrant (ISO)

gallic acid (ISO)

hydrogen peroxide (ISO)

hydroquinone (ISO)

lead(0) (ISO)

mercury dibromide (ISO)

methylmercury chloride (ISO)

mitomycin C (ISO)

N,N-diethyl-m-toluamide (EXP)

N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal (ISO)

N-nitrosodiethylamine (ISO)

paraquat (EXP)

permethrin (EXP)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

progesterone (ISO)

quercetin (ISO)

raloxifene (ISO)

resveratrol (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sodium dichromate (EXP)

Soman (EXP)

sunitinib (ISO)

T-2 toxin (EXP,ISO)

tamoxifen (ISO)

testosterone (ISO)

thioacetamide (EXP)

thiram (ISO)

tributylstannane (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

triphenyl phosphate (EXP)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

anterograde neuronal dense core vesicle transport (IMP)

axonal transport of mitochondrion (IBA,IMP)

positive regulation of insulin secretion involved in cellular response to glucose stimulus (IMP)

regulation of insulin secretion involved in cellular response to glucose stimulus (IDA)

regulation of synaptic activity (IMP)

synapse maturation (IBA,IMP)

Cellular Component

axon cytoplasm (IEA)

cytoplasmic microtubule (IBA)

dense body (IDA)

membrane (IEA)

microtubule (IDA,IEA,ISO)

mitochondrion (ISO)

vesicle (IDA,IEA,ISO)

Molecular Function

microtubule binding (IDA)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

mitochondria transport pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Syntabulin-kinesin-1 family member 5B-mediated axonal transport contributes to activity-dependent presynaptic assembly.	Cai Q, etal., J Neurosci. 2007 Jul 4;27(27):7284-96.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Regulation of mitochondrial transport in neurons.	Lin MY and Sheng ZH, Exp Cell Res. 2015 May 15;334(1):35-44. doi: 10.1016/j.yexcr.2015.01.004. Epub 2015 Jan 19.
4.	KIF5B motor adaptor syntabulin maintains synaptic transmission in sympathetic neurons.	Ma H, etal., J Neurosci. 2009 Oct 14;29(41):13019-29. doi: 10.1523/JNEUROSCI.2517-09.2009.
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	The microtubule associated protein syntabulin is required for glucose-stimulated and cAMP-potentiated insulin secretion.	Ying Y, etal., FEBS Lett. 2012 Oct 19;586(20):3674-80. doi: 10.1016/j.febslet.2012.08.025. Epub 2012 Sep 6.

Additional References at PubMed

PMID:15459722	PMID:17045436	PMID:26868290	PMID:34800366

Genomics

Comparative Map Data

Sybu
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	77,731,662 - 77,833,413 (-)	NCBI		GRCr8
mRatBN7.2	7	75,847,000 - 75,948,919 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	75,847,003 - 75,948,828 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	7	83,600,614 - 83,670,121 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	83,600,617 - 83,670,356 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	83,615,445 - 83,685,901 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	80,551,448 - 80,636,458 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	7	72,816,778 - 72,887,484 (-)	NCBI		Celera
Cytogenetic Map	7	q31	NCBI

SYBU
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	109,573,978 - 109,691,600 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	109,573,978 - 109,691,791 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	8	110,586,207 - 110,703,829 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	110,655,581 - 110,773,196 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	8	106,773,801 - 106,891,437 (-)	NCBI		Celera
Cytogenetic Map	8	q23.2	NCBI
HuRef	8	105,908,387 - 106,025,974 (-)	NCBI		HuRef
CHM1_1	8	110,626,649 - 110,744,269 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	8	110,702,563 - 110,820,184 (-)	NCBI		T2T-CHM13v2.0

Sybu
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	44,535,252 - 44,651,466 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	44,535,252 - 44,651,459 (-)	Ensembl		GRCm39 Ensembl
GRCm38	15	44,671,856 - 44,788,070 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	44,671,856 - 44,788,063 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	44,503,402 - 44,619,609 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	44,501,930 - 44,618,137 (-)	NCBI		MGSCv36	mm8
Celera	15	45,123,907 - 45,239,526 (-)	NCBI		Celera
Cytogenetic Map	15	B3.2	NCBI
cM Map	15	16.91	NCBI

Sybu
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955417	16,971,394 - 17,036,940 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955417	16,971,394 - 17,036,925 (-)	NCBI	ChiLan1.0	ChiLan1.0

SYBU
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	126,948,878 - 127,066,430 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	102,469,864 - 102,587,403 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	106,223,046 - 106,340,418 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	108,368,117 - 108,436,570 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	108,368,117 - 108,483,927 (-)	Ensembl	panpan1.1		panPan2

SYBU
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	13	10,110,183 - 10,179,514 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	13	10,111,091 - 10,180,056 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	13	10,100,830 - 10,209,568 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	13	10,391,898 - 10,465,693 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	13	10,391,905 - 10,501,668 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	13	10,133,302 - 10,242,126 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	13	10,250,505 - 10,324,527 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	13	10,340,031 - 10,448,908 (-)	NCBI		UU_Cfam_GSD_1.0

Sybu
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	27,906,164 - 28,012,831 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936470	35,332,452 - 35,438,204 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936470	35,332,243 - 35,439,095 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SYBU
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	27,901,097 - 27,974,660 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	27,899,264 - 27,975,389 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	30,103,738 - 30,217,060 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SYBU
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	104,274,092 - 104,390,051 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	104,273,217 - 104,344,348 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666039	36,184,560 - 36,300,374 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sybu
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624763	8,657,285 - 8,766,586 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624763	8,657,276 - 8,742,161 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Sybu
657 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	474
Count of miRNA genes:	218
Interacting mature miRNAs:	272
Transcripts:	ENSRNOT00000005584, ENSRNOT00000073442
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300179	Kidm5	Kidney mass QTL 5	3.51		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	7	43747012	135012528	Rat
2293667	Bss42	Bone structure and strength QTL 42	7.25	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra cross-sectional area (CMO:0001689)	7	47651439	92651439	Rat
10053722	Scort27	Serum corticosterone level QTL 27	2.41	0.0083	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	7	43228750	88228750	Rat
2317035	Aia16	Adjuvant induced arthritis QTL 16	2.71		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	7	59238038	104238038	Rat
1300127	Srn1	Serum renin concentration QTL 1	3.87		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	7	29409683	84928080	Rat
2293678	Bss24	Bone structure and strength QTL 24	6.71	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	7	47651439	92651439	Rat
1358361	Sradr5	Stress Responsive Adrenal Weight QTL 5	5.55		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	7	43747012	108555253	Rat
1357338	Stl17	Serum triglyceride level QTL 17	3.23		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	7	69736356	112729554	Rat
631513	Scl7	Serum cholesterol level QTL 7	4.1		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	7	37960569	82960569	Rat
634331	Pia17	Pristane induced arthritis QTL 17	4.7		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	7	73829340	130221005	Rat
2293685	Bmd21	Bone mineral density QTL 21	4.2	0.0003	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	7	47651439	92651439	Rat
10755453	Coatc12	Coat color QTL 12		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	31112832	76112832	Rat
631504	Cm27	Cardiac mass QTL 27	3.45		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	7	44421311	118198041	Rat
70173	Niddm19	Non-insulin dependent diabetes mellitus QTL 19	4.33	0.00005	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	7	64002457	135012528	Rat
634326	Hc3	Hypercalciuria QTL 3	2.1		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	7	42787314	87787314	Rat
2293696	Bmd32	Bone mineral density QTL 32	5.1	0.0001	femur strength trait (VT:0010010)	femoral neck polar moment of inertia (CMO:0001670)	7	47651439	92651439	Rat
7411605	Foco14	Food consumption QTL 14	24.1	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	34293282	79293282	Rat
1300151	Bp181	Blood pressure QTL 181	3.36		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	7	53612714	103945643	Rat
1559283	Emca4	Estrogen-induced mammary cancer QTL 4	3.7		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	7	62004452	101773158	Rat
1643004	Pain2	Pain QTL 2	1		mechanical nociception trait (VT:0002734)	self mutilation severity score (CMO:0002145)	7	9462246	98011544	Rat
738030	Anxrr8	Anxiety related response QTL 8	4.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	46590070	91590070	Rat
1300149	Cm6	Cardiac mass QTL 6	4.09		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	7	43747099	102228765	Rat
7411607	Foco15	Food consumption QTL 15		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	75918751	120918751	Rat
631534	Lnnr1	Liver neoplastic nodule remodeling QTL 1	3.85	0.001	liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)	7	34293282	79293282	Rat
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	924703	115097879	Rat
2293707	Bss32	Bone structure and strength QTL 32	7.64	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	7	47651439	92651439	Rat
61357	Bp38	Blood pressure QTL 38	1.6	0.052	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	41333674	119109060	Rat
2293644	Bmd29	Bone mineral density QTL 29	5.4	0.0001	femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	7	47651439	92651439	Rat
2316947	Rf58	Renal function QTL 58	7.8		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	7	68938720	113886318	Rat
2300178	Bmd54	Bone mineral density QTL 54	5.3	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	7	47651439	92651439	Rat
1298528	Bp169	Blood pressure QTL 169		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	61074194	106074194	Rat
61428	Scl3	Serum cholesterol level QTL 3	3.2		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	7	44867533	89867533	Rat
1300132	Bp182	Blood pressure QTL 182	3.49		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	7	19654317	84928080	Rat
1576303	Ept7	Estrogen-induced pituitary tumorigenesis QTL 7	3.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	7	62004452	101773158	Rat
7411654	Foco25	Food consumption QTL 25	9.3	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	75918751	120918751	Rat
2316955	Stl24	Serum triglyceride level QTL 24	7.1		blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	7	68938720	113886318	Rat
2316952	Pur22	Proteinuria QTL 22	5.2		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	7	68938720	113886318	Rat
631540	Bw9	Body weight QTL 9	4.5		body mass (VT:0001259)	body weight (CMO:0000012)	7	69736226	117455174	Rat

Markers in Region

D7Uwm14

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	7	77,796,465 - 77,796,586 (+)	Marker Load Pipeline
mRatBN7.2	7	75,911,804 - 75,911,927 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	83,664,426 - 83,664,546	NCBI	Rnor6.0
Rnor_5.0	7	83,680,214 - 83,680,334	UniSTS	Rnor5.0
RGSC_v3.4	7	80,630,782 - 80,630,902	UniSTS	RGSC3.4
RGSC_v3.4	7	80,630,781 - 80,630,902	RGD	RGSC3.4
Celera	7	72,881,788 - 72,881,909	UniSTS
Cytogenetic Map	7	q31	UniSTS

BE113572

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	75,915,780 - 75,915,955 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	83,668,400 - 83,668,574	NCBI	Rnor6.0
Rnor_5.0	7	83,684,188 - 83,684,362	UniSTS	Rnor5.0
RGSC_v3.4	7	80,634,756 - 80,634,930	UniSTS	RGSC3.4
Celera	7	72,885,763 - 72,885,937	UniSTS
RH 3.4 Map	7	525.5	UniSTS
Cytogenetic Map	7	q31	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	43	113	85	84	53	25	53	6	204	91	93	43	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001427665	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006226063	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006226064	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006241616	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006241617	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595230	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603442	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080175	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080176	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080178	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080180	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080181	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080182	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080183	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264116	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264117	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264118	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264119	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ211706	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000005584 ⟹ ENSRNOP00000005584

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	75,847,003 - 75,948,587 (-)	Ensembl
Rnor_6.0 Ensembl	7	83,600,617 - 83,670,356 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000096897 ⟹ ENSRNOP00000078572

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	75,847,003 - 75,948,538 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000105901 ⟹ ENSRNOP00000097171

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	75,847,003 - 75,948,587 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111430 ⟹ ENSRNOP00000085889

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	75,847,003 - 75,948,828 (-)	Ensembl

RefSeq Acc Id:

NM_001427665 ⟹ NP_001414594

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	77,731,662 - 77,798,297 (-)	NCBI

RefSeq Acc Id:

XM_006241616 ⟹ XP_006241678

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	77,731,662 - 77,802,171 (-)	NCBI
mRatBN7.2	7	75,847,000 - 75,917,512 (-)	NCBI
Rnor_6.0	7	83,600,614 - 83,670,121 (-)	NCBI
Rnor_5.0	7	83,615,445 - 83,685,901 (-)	NCBI

Sequence:

show sequence

ATCGGGTCACCGAGAGACGGCAGCGCTTGCTCGCACAGCTGATAGGATTAGGAGCCCGTGCTTT
GTCGGCCCTGATTGAGTCCAAGACAGCCCCGGCATACGGCATACACAGGTGCCTCCTCCTGGAC
GGCGGCGGCGGCGCGGGGAGCCTGCAGGCAACGACGAGATGGGACCCCTCCGAGAGAGCAAGAA
GGAGCAGAGAGTCCAGCATCAGGAGAAGGAGTTCTCCAGGAGCCGGATTCCCAGGTTGATTCTG
CGACCCCATCTGCCTCAGCAGCAGCAGCAGCAGCAGAACAAGGTTTCCCCAGCCTCCGAGTCTC
CCTTTTCAGAGGAAGAAAGTAGAGAGTTCAACCCCAGCAGCTCCGGACGTTCAGCAAGGACAAT
TAGCAGCAACAGCTTCTGCTCAGACGACACAGGTTGTCCCAGCAGCCAGTCGGTATCCCCTGTG
AAGACTCCCTCAGACACTGGACACAGTCCCATTGGCTTTTGCCCTGGAAGTGATGAAGATTTTA
CCAGGAAGAAATGCAGGATTGGGATGGTTGGTGAGGGAAATATCCAATCAGCTCGTTATAAAAA
AGAATCCAAGGGAGGCATCATAAAGCCAGGTAGTGAAGCAGATTTTAGCTCCTCAAGCAGCACA
GGCAGCATCTCGGCTCCTGAGGTCCACATGTCCACGACAGGAAACAAGCGAGCCTCTTTCTCAC
GCAACAGAGGTCCTCATGGGCGGAGCAATGGAGCACCATCCCACAAGTCTGGCAGCAGCCCACC
GTCCCCAAGGGAAAAAGACCTTGTGTCTATGCTGTGCAGAAATCCACTGAGCCCCAGTAACATC
CATCCTAGCTACGCCCCTTCTTCTCCAAGTAGCAGCAACTCCGGCTCCTACAAAGGAAGCGATT
GTAGTCCAGTCATGAGGAGGTCTGGACGATATATGTCTTGTGGAGAAAATCATGGCGTCAAACC
CCCAAATCCAGAACAGTATTTGACACCTCTGCAGCAGAAGGAGGTCACAGTGAGGCATTTGAGG
ACCAAGCTGAAGGAGTCTGAGCGCCGACTCCATGAGAGGGAATCTGAAATCATGGAGCTCAAGT
CTCAGCTGGCTCGGATGAGGGAAGACTGGATAGAGGAAGAGTGCCACAGGGTGGAGGCTCAGTT
GGCGCTCAAAGAAGCCAGAAAAGAGATTAAGCAGCTCAAACAGGTCATTGAGACTATGAGGAGC
AGCTTGGCTGATAAAGATAAAGGCATTCAGAAGTACTTTGTGGACATAAACATCCAAAACAAGA
AACTGGAGTCTCTGCTTCAAAGCATGGAGATGGCGCACAATAGTTCCCTGAGGGATGAACTGTG
TCTAGACTTCTCCTTCGATTCCCCAGAGAAAAGCTTACCCCTAAGCAGCACATATGACAAGATG
GCGGACGGGTTGTCTCTGGAAGAACAGATAACAGAGGAAGGTGCTGACAGTGAGCTTCTGGTGG
GAGACAGCATGGCCGAGGGCACAGATCTGTTAGATGAGATAGTGACTGCCACCACCACAGAATC
CGGTGACCTGGAGTTTGTTCATTCCACTCCAGGGCCACAAGCCCTCAAGCCTCTCCCCTTGGTG
AGCCAGGAAGAGGGCATTGTGGTGGTGGAGCAAGCAGTGCAGACCGATGTGGTGCCGTTCAGCC
CTGCCATCTCAGAGCTCCTTCAGAGTGTGCTAAAGTTGCAGGACTCCTGTCCCACAAGCTCAGC
ATCCCCAGATGAATCCGGAGCTGACTCAATGGAAAGCTTCTCAGAATCCATCTCTGCCTTAATG
GTTGATTTAACTCCAAGAAGTCCCAACTCAGCCATCCTTCTGTCTCCTGTGGAGATTCCATTCA
GCAAGGCAGCTACGGAAGCCCGTGCAAACCGCCTCATGAGAGAGCTAGATTTTGCAGCCTGCAC
AGAAGAAAGGTTGGACAGCATCCTCTCGCTGTCTCAGGGAGGTGTCGTGAGGCAGTACTGGAGC
AGCAGTTTCTTGGTGGATCTACTGGCTGTGGCTGCCCCTGTGGTACCCACTGTTTTGTGGGTAT
TCAGTACTCAGAGAGGGGGTACAGATCCTGTCTACAACATTGGAGCCCTGCTCCGGGGCTGCTG
TGTGGTGGCTCTACACTCCCTACGCCGCACAGCTTTCCACATGAAAACCTAATTAGTCGTTACC
ATGTGCCAATGTATCTGTGTAGCGTGGTGCCAGGTAGAGCAACCTCAGGTGGATCAGTGGAAGT
CTCTATTGTCATTTTTGCTCCTTGCTATTTGATTTGCACTATAGTCAGTTGCAGCCTGTTCACT
GTTTAAACCAGAGGTATCTTCCAAGGCATGGAAACCTGGTTCTGGTAGATGTCCCACCAGAGTG
GCGTAGAAAGCATGCTTGTGCCCCTGCCGTGTTGTCTGAGGTGCCCGTTCTTATACTAATGGTT
CAGAAAGAGAAAATGCAGTTTGCACTTTCACCACAGCCTCTCTAAGGCTGGGCATGTTATCTCC
TTGCTTTGCTTTGTGCTGTTTTAAAATGTGTAATTGTTCCAGCATTCCAATGGTCTTGTGCATA
GCAGGGGACTGTAACCAAAAATAAAAATGTATTTGTGTAATTAGTTCAAAGAAGACTCGAATAG
CTCTTTATTGTCTTTCTTGGGGTTGATAAAGTTTGAGTGTTTGGATTTTTTTTTAAATGTAGCT
CCAAAGTCTTAAAAGGCTCATTTGCTCTTAAACCTGTCAGTTGATGATACTATGTAAATTTACA
ATGTACTAACTTATTTTTTGCTTATTATATATAGTGGTTCTTTTTTTGGAAATTATTTGTACCC
ACACACTTCAGCATGAAAATAAAGATTAGTGTTTCCATTTAAA

hide sequence

RefSeq Acc Id:

XM_006241617 ⟹ XP_006241679

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	77,731,662 - 77,802,082 (-)	NCBI
mRatBN7.2	7	75,847,000 - 75,917,512 (-)	NCBI
Rnor_6.0	7	83,600,614 - 83,670,121 (-)	NCBI
Rnor_5.0	7	83,615,445 - 83,685,901 (-)	NCBI

Sequence:

show sequence

ATCGGGTCACCGAGAGACGGCAGCGCTTGCTCGCACAGCTGATAGGATTAGGAGCCCGTGCTTT
GTCGGCCCTGATTGAGTCCAAGACAGCCCCGGCATACGGCATACACAGGTGCCTCCTCCTGGAC
GGCGGCGGCGGCGCGGGGAGCCTGCAGGCAACGACGAGATGGGACCCCTCCGAGAGAGCAAGAA
GGAGCAGAGAGTCCAGCATCAGGAGAAGGAGTTCTCCAGGAGCCGGATTCCCAGGTTGATTCTG
CGACCCCATCTGCCTCAGCAGCAGCAGCAGCAGCAGAACAAGGTTTCCCCAGCCTCCGAGTCTC
CCTTTTCAGAGGAAGAAAGTAGAGAGTTCAACCCCAGCAGCTCCGGACGTTCAGCAAGGACAAT
TAGCAGCAACAGCTTCTGCTCAGACGACACAGGTTGTCCCAGCAGCCAGTCGGTATCCCCTGTG
AAGACTCCCTCAGACACTGGACACAGTCCCATTGGCTTTTGCCCTGGAAGTGATGAAGATTTTA
CCAGGAAGAAATGCAGGATTGGGATGGTTGGTGAGGGAAATATCCAATCAGCTCGTTATAAAAA
AGAATCCAAGGGAGGCATCATAAAGCCAGGTAGTGAAGCAGATTTTAGCTCCTCAAGCAGCACA
GGCAGCATCTCGGCTCCTGAGGTCCACATGTCCACGACAGGAAACAAGCGAGCCTCTTTCTCAC
GCAAAGGTCCTCATGGGCGGAGCAATGGAGCACCATCCCACAAGTCTGGCAGCAGCCCACCGTC
CCCAAGGGAAAAAGACCTTGTGTCTATGCTGTGCAGAAATCCACTGAGCCCCAGTAACATCCAT
CCTAGCTACGCCCCTTCTTCTCCAAGTAGCAGCAACTCCGGCTCCTACAAAGGAAGCGATTGTA
GTCCAGTCATGAGGAGGTCTGGACGATATATGTCTTGTGGAGAAAATCATGGCGTCAAACCCCC
AAATCCAGAACAGTATTTGACACCTCTGCAGCAGAAGGAGGTCACAGTGAGGCATTTGAGGACC
AAGCTGAAGGAGTCTGAGCGCCGACTCCATGAGAGGGAATCTGAAATCATGGAGCTCAAGTCTC
AGCTGGCTCGGATGAGGGAAGACTGGATAGAGGAAGAGTGCCACAGGGTGGAGGCTCAGTTGGC
GCTCAAAGAAGCCAGAAAAGAGATTAAGCAGCTCAAACAGGTCATTGAGACTATGAGGAGCAGC
TTGGCTGATAAAGATAAAGGCATTCAGAAGTACTTTGTGGACATAAACATCCAAAACAAGAAAC
TGGAGTCTCTGCTTCAAAGCATGGAGATGGCGCACAATAGTTCCCTGAGGGATGAACTGTGTCT
AGACTTCTCCTTCGATTCCCCAGAGAAAAGCTTACCCCTAAGCAGCACATATGACAAGATGGCG
GACGGGTTGTCTCTGGAAGAACAGATAACAGAGGAAGGTGCTGACAGTGAGCTTCTGGTGGGAG
ACAGCATGGCCGAGGGCACAGATCTGTTAGATGAGATAGTGACTGCCACCACCACAGAATCCGG
TGACCTGGAGTTTGTTCATTCCACTCCAGGGCCACAAGCCCTCAAGCCTCTCCCCTTGGTGAGC
CAGGAAGAGGGCATTGTGGTGGTGGAGCAAGCAGTGCAGACCGATGTGGTGCCGTTCAGCCCTG
CCATCTCAGAGCTCCTTCAGAGTGTGCTAAAGTTGCAGGACTCCTGTCCCACAAGCTCAGCATC
CCCAGATGAATCCGGAGCTGACTCAATGGAAAGCTTCTCAGAATCCATCTCTGCCTTAATGGTT
GATTTAACTCCAAGAAGTCCCAACTCAGCCATCCTTCTGTCTCCTGTGGAGATTCCATTCAGCA
AGGCAGCTACGGAAGCCCGTGCAAACCGCCTCATGAGAGAGCTAGATTTTGCAGCCTGCACAGA
AGAAAGGTTGGACAGCATCCTCTCGCTGTCTCAGGGAGGTGTCGTGAGGCAGTACTGGAGCAGC
AGTTTCTTGGTGGATCTACTGGCTGTGGCTGCCCCTGTGGTACCCACTGTTTTGTGGGTATTCA
GTACTCAGAGAGGGGGTACAGATCCTGTCTACAACATTGGAGCCCTGCTCCGGGGCTGCTGTGT
GGTGGCTCTACACTCCCTACGCCGCACAGCTTTCCACATGAAAACCTAATTAGTCGTTACCATG
TGCCAATGTATCTGTGTAGCGTGGTGCCAGGTAGAGCAACCTCAGGTGGATCAGTGGAAGTCTC
TATTGTCATTTTTGCTCCTTGCTATTTGATTTGCACTATAGTCAGTTGCAGCCTGTTCACTGTT
TAAACCAGAGGTATCTTCCAAGGCATGGAAACCTGGTTCTGGTAGATGTCCCACCAGAGTGGCG
TAGAAAGCATGCTTGTGCCCCTGCCGTGTTGTCTGAGGTGCCCGTTCTTATACTAATGGTTCAG
AAAGAGAAAATGCAGTTTGCACTTTCACCACAGCCTCTCTAAGGCTGGGCATGTTATCTCCTTG
CTTTGCTTTGTGCTGTTTTAAAATGTGTAATTGTTCCAGCATTCCAATGGTCTTGTGCATAGCA
GGGGACTGTAACCAAAAATAAAAATGTATTTGTGTAATTAGTTCAAAGAAGACTCGAATAGCTC
TTTATTGTCTTTCTTGGGGTTGATAAAGTTTGAGTGTTTGGATTTTTTTTTAAATGTAGCTCCA
AAGTCTTAAAAGGCTCATTTGCTCTTAAACCTGTCAGTTGATGATACTATGTAAATTTACAATG
TACTAACTTATTTTTTGCTTATTATATATAGTGGTTCTTTTTTTGGAAATTATTTGTACCCACA
CACTTCAGCATGAAAATAAAGATTAGTGTTTCCATTTAAA

hide sequence

RefSeq Acc Id:

XM_039080175 ⟹ XP_038936103

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	77,731,662 - 77,833,412 (-)	NCBI
mRatBN7.2	7	75,847,000 - 75,948,919 (-)	NCBI

RefSeq Acc Id:

XM_039080176 ⟹ XP_038936104

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	77,731,662 - 77,802,171 (-)	NCBI
mRatBN7.2	7	75,847,000 - 75,917,512 (-)	NCBI

RefSeq Acc Id:

XM_039080178 ⟹ XP_038936106

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	77,731,662 - 77,771,230 (-)	NCBI
mRatBN7.2	7	75,847,000 - 75,886,505 (-)	NCBI

RefSeq Acc Id:

XM_039080180 ⟹ XP_038936108

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	77,731,662 - 77,771,237 (-)	NCBI
mRatBN7.2	7	75,847,000 - 75,886,507 (-)	NCBI

RefSeq Acc Id:

XM_039080181 ⟹ XP_038936109

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	77,731,662 - 77,771,496 (-)	NCBI
mRatBN7.2	7	75,847,000 - 75,886,829 (-)	NCBI

RefSeq Acc Id:

XM_039080182 ⟹ XP_038936110

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	77,731,662 - 77,771,229 (-)	NCBI
mRatBN7.2	7	75,847,000 - 75,886,507 (-)	NCBI

RefSeq Acc Id:

XM_039080183 ⟹ XP_038936111

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	77,731,662 - 77,771,229 (-)	NCBI
mRatBN7.2	7	75,847,000 - 75,886,507 (-)	NCBI

RefSeq Acc Id:

XM_063264115 ⟹ XP_063120185

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	77,731,662 - 77,802,172 (-)	NCBI

RefSeq Acc Id:

XM_063264116 ⟹ XP_063120186

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	77,731,662 - 77,802,171 (-)	NCBI

RefSeq Acc Id:

XM_063264117 ⟹ XP_063120187

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	77,731,662 - 77,802,171 (-)	NCBI

RefSeq Acc Id:

XM_063264118 ⟹ XP_063120188

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	77,731,662 - 77,833,301 (-)	NCBI

RefSeq Acc Id:

XM_063264119 ⟹ XP_063120189

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	77,731,662 - 77,833,413 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001414594	(Get FASTA)	NCBI Sequence Viewer
	XP_006241678	(Get FASTA)	NCBI Sequence Viewer
	XP_006241679	(Get FASTA)	NCBI Sequence Viewer
	XP_038936103	(Get FASTA)	NCBI Sequence Viewer
	XP_038936104	(Get FASTA)	NCBI Sequence Viewer
	XP_038936106	(Get FASTA)	NCBI Sequence Viewer
	XP_038936108	(Get FASTA)	NCBI Sequence Viewer
	XP_038936109	(Get FASTA)	NCBI Sequence Viewer
	XP_038936110	(Get FASTA)	NCBI Sequence Viewer
	XP_038936111	(Get FASTA)	NCBI Sequence Viewer
	XP_063120185	(Get FASTA)	NCBI Sequence Viewer
	XP_063120186	(Get FASTA)	NCBI Sequence Viewer
	XP_063120187	(Get FASTA)	NCBI Sequence Viewer
	XP_063120188	(Get FASTA)	NCBI Sequence Viewer
	XP_063120189	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM16301	(Get FASTA)	NCBI Sequence Viewer
	EDM16302	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000005584
	ENSRNOP00000005584.7
	ENSRNOP00000078572
	ENSRNOP00000078572.1
	ENSRNOP00000085889
	ENSRNOP00000085889.1
	ENSRNOP00000097171
	ENSRNOP00000097171.1
	ENSRNOP00000106185
	ENSRNOP00000107368

RefSeq Acc Id:	XP_006241679 ⟸ XM_006241617
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I5ZLI6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGPLRESKKEQRVQHQEKEFSRSRIPRLILRPHLPQQQQQQQNKVSPASESPFSEEESREFNPS SSGRSARTISSNSFCSDDTGCPSSQSVSPVKTPSDTGHSPIGFCPGSDEDFTRKKCRIGMVGEG NIQSARYKKESKGGIIKPGSEADFSSSSSTGSISAPEVHMSTTGNKRASFSRKGPHGRSNGAPS HKSGSSPPSPREKDLVSMLCRNPLSPSNIHPSYAPSSPSSSNSGSYKGSDCSPVMRRSGRYMSC GENHGVKPPNPEQYLTPLQQKEVTVRHLRTKLKESERRLHERESEIMELKSQLARMREDWIEEE CHRVEAQLALKEARKEIKQLKQVIETMRSSLADKDKGIQKYFVDINIQNKKLESLLQSMEMAHN SSLRDELCLDFSFDSPEKSLPLSSTYDKMADGLSLEEQITEEGADSELLVGDSMAEGTDLLDEI VTATTTESGDLEFVHSTPGPQALKPLPLVSQEEGIVVVEQAVQTDVVPFSPAISELLQSVLKLQ DSCPTSSASPDESGADSMESFSESISALMVDLTPRSPNSAILLSPVEIPFSKAATEARANRLMR ELDFAACTEERLDSILSLSQGGVVRQYWSSSFLVDLLAVAAPVVPTVLWVFSTQRGGTDPVYNI GALLRGCCVVALHSLRRTAFHMKT hide sequence

RefSeq Acc Id:	XP_006241678 ⟸ XM_006241616
- Peptide Label:	isoform X4
- UniProtKB:	A6HRC1 (UniProtKB/TrEMBL), A0A8I5ZLI6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGPLRESKKEQRVQHQEKEFSRSRIPRLILRPHLPQQQQQQQNKVSPASESPFSEEESREFNPS SSGRSARTISSNSFCSDDTGCPSSQSVSPVKTPSDTGHSPIGFCPGSDEDFTRKKCRIGMVGEG NIQSARYKKESKGGIIKPGSEADFSSSSSTGSISAPEVHMSTTGNKRASFSRNRGPHGRSNGAP SHKSGSSPPSPREKDLVSMLCRNPLSPSNIHPSYAPSSPSSSNSGSYKGSDCSPVMRRSGRYMS CGENHGVKPPNPEQYLTPLQQKEVTVRHLRTKLKESERRLHERESEIMELKSQLARMREDWIEE ECHRVEAQLALKEARKEIKQLKQVIETMRSSLADKDKGIQKYFVDINIQNKKLESLLQSMEMAH NSSLRDELCLDFSFDSPEKSLPLSSTYDKMADGLSLEEQITEEGADSELLVGDSMAEGTDLLDE IVTATTTESGDLEFVHSTPGPQALKPLPLVSQEEGIVVVEQAVQTDVVPFSPAISELLQSVLKL QDSCPTSSASPDESGADSMESFSESISALMVDLTPRSPNSAILLSPVEIPFSKAATEARANRLM RELDFAACTEERLDSILSLSQGGVVRQYWSSSFLVDLLAVAAPVVPTVLWVFSTQRGGTDPVYN IGALLRGCCVVALHSLRRTAFHMKT hide sequence

Ensembl Acc Id:

ENSRNOP00000005584 ⟸ ENSRNOT00000005584

RefSeq Acc Id:	XP_038936103 ⟸ XM_039080175
- Peptide Label:	isoform X4
- UniProtKB:	A6HRC1 (UniProtKB/TrEMBL), A0A8I5ZLI6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038936104 ⟸ XM_039080176
- Peptide Label:	isoform X6
- UniProtKB:	F1LUC0 (UniProtKB/TrEMBL), A0A8I5ZLI6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038936109 ⟸ XM_039080181
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_038936111 ⟸ XM_039080183
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_038936110 ⟸ XM_039080182
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_038936108 ⟸ XM_039080180
- Peptide Label:	isoform X8
- UniProtKB:	A0A8I5ZLI6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038936106 ⟸ XM_039080178
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I5ZLI6 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000078572 ⟸ ENSRNOT00000096897

Ensembl Acc Id:

ENSRNOP00000097171 ⟸ ENSRNOT00000105901

Ensembl Acc Id:

ENSRNOP00000085889 ⟸ ENSRNOT00000111430

RefSeq Acc Id:	XP_063120189 ⟸ XM_063264119
- Peptide Label:	isoform X6
- UniProtKB:	F1LUC0 (UniProtKB/TrEMBL), A0A8I5ZLI6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120188 ⟸ XM_063264118
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I5ZLI6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120185 ⟸ XM_063264115
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AS68 (UniProtKB/TrEMBL), A0A8I6A508 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120186 ⟸ XM_063264116
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6A508 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120187 ⟸ XM_063264117
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6A508 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001414594 ⟸ NM_001427665
- UniProtKB:	A6HRC1 (UniProtKB/TrEMBL), A0A8I5ZLI6 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1LUC0-F1-model_v2	AlphaFold	F1LUC0	1-665	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1564335	AgrOrtholog
BioCyc Gene	G2FUF-33477	BioCyc
Ensembl Genes	ENSRNOG00000004200	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000005584	ENTREZGENE
	ENSRNOT00000005584.9	UniProtKB/TrEMBL
	ENSRNOT00000096897	ENTREZGENE
	ENSRNOT00000096897.1	UniProtKB/TrEMBL
	ENSRNOT00000105901	ENTREZGENE
	ENSRNOT00000105901.1	UniProtKB/TrEMBL
	ENSRNOT00000111430	ENTREZGENE
	ENSRNOT00000111430.1	UniProtKB/TrEMBL
	ENSRNOT00000129690	ENTREZGENE
	ENSRNOT00000151403	ENTREZGENE
InterPro	Syntaphilin/Syntabulin	UniProtKB/TrEMBL
KEGG Report	rno:500865	UniProtKB/TrEMBL
NCBI Gene	500865	ENTREZGENE
PANTHER	MICROTUBULE-ASSOCIATED PROTEIN/SYNTAPHILIN	UniProtKB/TrEMBL
	PTHR16208:SF4	UniProtKB/TrEMBL
Pfam	Syntaphilin	UniProtKB/TrEMBL
PhenoGen	Sybu	PhenoGen
RatGTEx	ENSRNOG00000004200	RatGTEx
UniProt	A0A8I5ZLI6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A508	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AS68	ENTREZGENE, UniProtKB/TrEMBL
	A6HRC1	ENTREZGENE, UniProtKB/TrEMBL
	F1LUC0	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-01-11	Sybu	syntabulin	Sybu	syntabulin (syntaxin-interacting)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2011-08-02	Sybu	syntabulin (syntaxin-interacting)	Golsyn	Golgi-localized protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-07	Golsyn	Golgi-localized protein	RGD1564335_predicted	similar to RIKEN cDNA 5730410E15 gene (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1564335_predicted	similar to RIKEN cDNA 5730410E15 gene (predicted)	LOC500865	similar to RIKEN cDNA 5730410E15 gene	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC500865	similar to RIKEN cDNA 5730410E15 gene			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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RGD Manual Annotations