Cdca7l (cell division cycle associated 7 like) - Rat Genome Database

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Gene: Cdca7l (cell division cycle associated 7 like) Rattus norvegicus
Analyze
Symbol: Cdca7l
Name: cell division cycle associated 7 like
RGD ID: 1564080
Description: Predicted to be involved in regulation of DNA-templated transcription. Predicted to act upstream of or within positive regulation of cell population proliferation. Predicted to be located in cytosol; fibrillar center; and nucleoplasm. Predicted to be active in nucleus. Orthologous to human CDCA7L (cell division cycle associated 7 like); INTERACTS WITH 3,7-dihydropurine-6-thione; 6-propyl-2-thiouracil; acetamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: cell division cycle-associated 7-like protein; LOC619566; similar to transcription factor RAM2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86144,936,885 - 144,982,844 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6144,908,171 - 144,982,843 (+)EnsemblGRCr8
mRatBN7.26138,793,953 - 138,839,889 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6138,794,228 - 138,839,888 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx6142,236,179 - 142,281,814 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06138,853,594 - 138,899,230 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06139,401,964 - 139,447,548 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.06145,739,570 - 145,785,607 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6145,740,035 - 145,785,606 (+)Ensemblrn6Rnor6.0
Rnor_5.06154,626,049 - 154,699,231 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.46145,146,073 - 145,191,663 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera6136,447,403 - 136,493,195 (+)NCBICelera
Cytogenetic Map6q33NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,4,4'-trichlorobiphenyl  (ISO)
3,7-dihydropurine-6-thione  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
CGP 52608  (ISO)
clofibrate  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
Cuprizon  (EXP)
cycloheximide  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
dorsomorphin  (ISO)
Enterolactone  (ISO)
entinostat  (ISO)
gentamycin  (EXP)
hypochlorous acid  (ISO)
indometacin  (ISO)
lead(0)  (ISO)
lidocaine  (EXP)
mercaptopurine  (EXP)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
ozone  (ISO)
PCB138  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
pravastatin  (EXP,ISO)
propiconazole  (ISO)
purine-6-thiol  (EXP)
quercetin  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
tamoxifen  (ISO)
testosterone  (ISO)
thapsigargin  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
Tributyltin oxide  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)
zaragozic acid A  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA,ISO)
fibrillar center  (IEA,ISO)
nucleolus  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15489334   PMID:15994933  


Genomics

Comparative Map Data
Cdca7l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86144,936,885 - 144,982,844 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6144,908,171 - 144,982,843 (+)EnsemblGRCr8
mRatBN7.26138,793,953 - 138,839,889 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6138,794,228 - 138,839,888 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx6142,236,179 - 142,281,814 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06138,853,594 - 138,899,230 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06139,401,964 - 139,447,548 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.06145,739,570 - 145,785,607 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6145,740,035 - 145,785,606 (+)Ensemblrn6Rnor6.0
Rnor_5.06154,626,049 - 154,699,231 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.46145,146,073 - 145,191,663 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera6136,447,403 - 136,493,195 (+)NCBICelera
Cytogenetic Map6q33NCBI
CDCA7L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38721,900,899 - 21,945,899 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl721,900,899 - 21,945,903 (-)Ensemblhg38GRCh38
GRCh37721,940,517 - 21,985,517 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36721,907,044 - 21,952,031 (-)NCBIBuild 36Build 36hg18NCBI36
Celera721,926,218 - 21,971,211 (-)NCBICelera
Cytogenetic Map7p15.3NCBI
HuRef721,826,171 - 21,871,060 (-)NCBIHuRef
CHM1_1721,941,227 - 21,986,281 (-)NCBICHM1_1
T2T-CHM13v2.0722,037,210 - 22,082,187 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2721,991,889 - 22,036,870 (-)NCBI
Cdca7l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912117,807,209 - 117,842,441 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12117,768,024 - 117,842,441 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm3812117,843,475 - 117,878,712 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12117,804,289 - 117,878,706 (+)Ensemblmm10GRCm38
MGSCv3712119,082,334 - 119,117,179 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3612112,046,157 - 112,082,644 (+)NCBIMGSCv36mm8
MGSCv3612118,285,870 - 118,322,812 (+)NCBIMGSCv36mm8
Cytogenetic Map12F2NCBI
cM Map1263.2NCBI
Cdca7l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541024,353,128 - 24,366,987 (-)Ensembl
ChiLan1.0NW_00495541024,353,024 - 24,366,987 (-)NCBIChiLan1.0ChiLan1.0
CDCA7L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2626,680,097 - 26,811,822 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1775,004,823 - 75,136,548 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0722,501,225 - 22,632,357 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1721,898,007 - 21,944,329 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl721,897,798 - 21,944,329 (-)EnsemblpanPan2panpan1.1
CDCA7L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11435,784,991 - 35,835,548 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1435,785,129 - 35,835,454 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1435,326,643 - 35,377,210 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01435,710,363 - 35,760,778 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1435,709,677 - 35,760,796 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11435,830,057 - 35,880,485 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01435,527,978 - 35,578,330 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01435,863,270 - 35,913,641 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cdca7l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511880,005,571 - 80,050,984 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365467,680,353 - 7,726,118 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365467,681,731 - 7,726,053 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDCA7L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl990,766,795 - 90,806,865 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1990,766,767 - 90,807,287 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29100,217,610 - 100,257,482 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CDCA7L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12136,304,723 - 36,349,801 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2136,305,383 - 36,351,035 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604268,229,588 - 68,274,053 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdca7l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247398,770,483 - 8,810,070 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247398,770,463 - 8,810,165 (+)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Cdca7l
352 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:533
Count of miRNA genes:270
Interacting mature miRNAs:326
Transcripts:ENSRNOT00000064868
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12801411Schws8Schwannoma susceptibility QTL 8nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)694968928139968928Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)6122549046140994061Rat
737976Pia24Pristane induced arthritis QTL 24joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)6112636280140994061Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6105156861140994061Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6100364669140994061Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
8552796Vie3Viral induced encephalitis QTL 32.6brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)696833997140994061Rat
2293085Iddm29Insulin dependent diabetes mellitus QTL 297.66blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)6122549046140286318Rat

Markers in Region
RH137623  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26138,829,188 - 138,829,380 (+)MAPPERmRatBN7.2
Rnor_6.06145,774,907 - 145,775,098NCBIRnor6.0
Rnor_5.06154,688,531 - 154,688,722UniSTSRnor5.0
RGSC_v3.46145,180,849 - 145,181,040UniSTSRGSC3.4
Celera6136,482,566 - 136,482,757UniSTS
Cytogenetic Map6q33UniSTS
RH140935  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X98,069,415 - 98,069,600 (+)MAPPERmRatBN7.2
mRatBN7.26138,835,000 - 138,835,286 (+)MAPPERmRatBN7.2
Rnor_6.06145,780,719 - 145,781,004NCBIRnor6.0
Rnor_6.0X105,706,216 - 105,706,400NCBIRnor6.0
Rnor_5.06154,694,343 - 154,694,628UniSTSRnor5.0
Rnor_5.0X105,595,483 - 105,595,667UniSTSRnor5.0
RGSC_v3.46145,186,775 - 145,187,060UniSTSRGSC3.4
RGSC_v3.4X122,351,775 - 122,351,959UniSTSRGSC3.4
CeleraX99,108,815 - 99,108,999UniSTS
Celera6136,488,307 - 136,488,592UniSTS
RH 3.4 Map6914.19UniSTS
Cytogenetic MapXq34UniSTS
Cytogenetic Map6q33UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 90 89 58 92 58 6 355 192 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000064868   ⟹   ENSRNOP00000061054
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6144,930,497 - 144,982,843 (+)Ensembl
mRatBN7.2 Ensembl6138,794,313 - 138,839,888 (+)Ensembl
Rnor_6.0 Ensembl6145,740,035 - 145,785,606 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000088969   ⟹   ENSRNOP00000074742
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6144,967,816 - 144,982,843 (+)Ensembl
mRatBN7.2 Ensembl6138,824,948 - 138,839,888 (+)Ensembl
Rnor_6.0 Ensembl6145,770,662 - 145,784,403 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000103690   ⟹   ENSRNOP00000079873
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6144,936,908 - 144,982,840 (+)Ensembl
mRatBN7.2 Ensembl6138,794,228 - 138,839,888 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000107048   ⟹   ENSRNOP00000083783
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6144,967,517 - 144,982,843 (+)Ensembl
mRatBN7.2 Ensembl6138,824,561 - 138,839,888 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000135636   ⟹   ENSRNOP00000101194
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6144,908,171 - 144,982,843 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000135786   ⟹   ENSRNOP00000100944
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6144,936,908 - 144,982,840 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000169814   ⟹   ENSRNOP00000102150
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6144,927,315 - 144,982,843 (+)Ensembl
RefSeq Acc Id: NM_001034953   ⟹   NP_001030125
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86144,937,271 - 144,982,844 (+)NCBI
mRatBN7.26138,794,313 - 138,839,889 (+)NCBI
Rnor_6.06145,740,035 - 145,785,607 (+)NCBI
Rnor_5.06154,626,049 - 154,699,231 (+)NCBI
RGSC_v3.46145,146,073 - 145,191,663 (+)RGD
Celera6136,447,403 - 136,493,195 (+)RGD
Sequence:
RefSeq Acc Id: XM_017594339   ⟹   XP_017449828
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86144,936,885 - 144,982,841 (+)NCBI
mRatBN7.26138,793,953 - 138,839,887 (+)NCBI
Rnor_6.06145,739,570 - 145,785,604 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001030125 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449828 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH98734 (Get FASTA)   NCBI Sequence Viewer  
  EDL89088 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000061054.1
  ENSRNOP00000079873
GenBank Protein Q4G059 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001030125   ⟸   NM_001034953
- UniProtKB: Q4G059 (UniProtKB/Swiss-Prot),   A6KDM3 (UniProtKB/TrEMBL),   A0A0G2K8U6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449828   ⟸   XM_017594339
- Peptide Label: isoform X1
- UniProtKB: A0A8I6G5U7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000061054   ⟸   ENSRNOT00000064868
Ensembl Acc Id: ENSRNOP00000074742   ⟸   ENSRNOT00000088969
Ensembl Acc Id: ENSRNOP00000079873   ⟸   ENSRNOT00000103690
Ensembl Acc Id: ENSRNOP00000083783   ⟸   ENSRNOT00000107048
Ensembl Acc Id: ENSRNOP00000100944   ⟸   ENSRNOT00000135786
Ensembl Acc Id: ENSRNOP00000101194   ⟸   ENSRNOT00000135636
Ensembl Acc Id: ENSRNOP00000102150   ⟸   ENSRNOT00000169814
Protein Domains
Zinc-finger

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4G059-F1-model_v2 AlphaFold Q4G059 1-438 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694911
Promoter ID:EPDNEW_R5435
Type:multiple initiation site
Name:Cdca7l_1
Description:cell division cycle associated 7 like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.06145,740,028 - 145,740,088EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564080 AgrOrtholog
BioCyc Gene G2FUF-35479 BioCyc
Ensembl Genes ENSRNOG00000005410 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000064868.3 UniProtKB/Swiss-Prot
  ENSRNOT00000103690 ENTREZGENE
IMAGE_CLONE IMAGE:7385105 IMAGE-MGC_LOAD
InterPro CDCA7/CDA7L UniProtKB/Swiss-Prot
  Znf-4CXXC_R1 UniProtKB/Swiss-Prot
KEGG Report rno:619566 UniProtKB/Swiss-Prot
MGC_CLONE MGC:112726 IMAGE-MGC_LOAD
NCBI Gene 619566 ENTREZGENE
PANTHER PTHR31169 UniProtKB/Swiss-Prot
  PTHR31169:SF4 UniProtKB/Swiss-Prot
Pfam zf-4CXXC_R1 UniProtKB/Swiss-Prot
PhenoGen Cdca7l PhenoGen
RatGTEx ENSRNOG00000005410 RatGTEx
UniProt A0A0G2K8U6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZZW6_RAT UniProtKB/TrEMBL
  A0A8I6G5U7 ENTREZGENE, UniProtKB/TrEMBL
  A6KDM3 ENTREZGENE, UniProtKB/TrEMBL
  CDA7L_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-05 Cdca7l  cell division cycle associated 7 like  LOC619566  similar to transcription factor RAM2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 LOC619566  similar to transcription factor RAM2      Symbol and Name status set to provisional 70820 PROVISIONAL