Potem (POTE ankyrin domain family member M) - Rat Genome Database

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Gene: Potem (POTE ankyrin domain family member M) Rattus norvegicus
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Symbol: Potem
Name: POTE ankyrin domain family member M
RGD ID: 1563748
Description: Orthologous to human POTEM (POTE ankyrin domain family member M); INTERACTS WITH atrazine; DDT; ketamine.
Type: protein-coding (Ensembl: pseudogene)
RefSeq Status: MODEL
Previously known as: ankyrin repeat domain-containing protein 7-like; chromatin structure-remodeling complex protein SYD-like; LOC103693919; LOC290675; LOC306365; RGD1563748; similar to ankyrin repeat domain 26; similar to ankyrin-like protein
RGD Orthologs
Human
Mouse
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81620,985,842 - 21,010,108 (+)NCBIGRCr8
mRatBN7.21620,193,646 - 20,311,924 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1619,949,230 - 19,976,541 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01621,947,702 - 22,118,777 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1621,955,168 - 22,116,834 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01622,013,859 - 22,019,946 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41620,434,396 - 20,464,795 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1620,115,727 - 20,147,515 (+)NCBICelera
Cytogenetic Map16p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Potem
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81620,985,842 - 21,010,108 (+)NCBIGRCr8
mRatBN7.21620,193,646 - 20,311,924 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1619,949,230 - 19,976,541 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01621,947,702 - 22,118,777 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1621,955,168 - 22,116,834 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01622,013,859 - 22,019,946 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41620,434,396 - 20,464,795 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1620,115,727 - 20,147,515 (+)NCBICelera
Cytogenetic Map16p14NCBI
POTEM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381418,967,434 - 19,003,752 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1418,967,434 - 19,003,752 (+)EnsemblGRCh38hg38GRCh38
GRCh371419,983,954 - 20,020,272 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361419,057,551 - 19,090,272 (-)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map14q11.2NCBI
CHM1_11419,984,647 - 20,020,421 (-)NCBICHM1_1
T2T-CHM13v2.01413,280,571 - 13,316,879 (+)NCBIT2T-CHM13v2.0
9530057J20Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39820,478,979 - 20,510,931 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl820,478,993 - 20,501,314 (+)EnsemblGRCm39 Ensembl
GRCm38819,903,378 - 19,935,330 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl819,903,392 - 19,925,713 (+)NCBIGRCm38mm10GRCm38
Cytogenetic Map8A2NCBI

Variants

.
Variants in Potem
2066 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631561Hcuc2Hepatic copper content QTL 22.8liver copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16126727669Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)161900443575226532Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133418960Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16132139025Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16422760946975965Rat
631517Scl9Serum cholesterol level QTL 93.3blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)161572643321034895Rat
9590151Scort8Serum corticosterone level QTL 88.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)16130836262Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760949227609Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16422760948972724Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126727669Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16422760943025077Rat
1600369Hcas8Hepatocarcinoma susceptibility QTL 8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)16122477621Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139533930Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16338015043025077Rat
1300133Rf24Renal function QTL 243.64blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)16338015021361552Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126727669Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683223646053497Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16143534949Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 8
Low 10 6 6 6 4 4 6 14 1 4
Below cutoff 9 15 6 10 6 4 5 42 17 19 8 4

Sequence


RefSeq Acc Id: ENSRNOT00000078734   ⟹   ENSRNOP00000072774
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1619,949,230 - 19,976,541 (+)Ensembl
Rnor_6.0 Ensembl1621,955,168 - 22,116,834 (-)Ensembl
RefSeq Acc Id: XM_063275939   ⟹   XP_063132009
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81620,985,842 - 21,010,108 (+)NCBI
Protein Sequences
Protein RefSeqs XP_063132009 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: ENSRNOP00000072774   ⟸   ENSRNOT00000078734
RefSeq Acc Id: XP_063132009   ⟸   XM_063275939

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K3T9-F1-model_v2 AlphaFold A0A0G2K3T9 1-208 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1563748 AgrOrtholog
BioCyc Gene G2FUF-11720 BioCyc
Ensembl Genes ENSRNOG00000059091 Ensembl
NCBI Gene Potem ENTREZGENE
PhenoGen Potem PhenoGen
RatGTEx ENSRNOG00000059091 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Potem  POTE ankyrin domain family member M  LOC103693919  ankyrin repeat domain-containing protein 7-like  Data merged from RGD:9119129 737654 PROVISIONAL
2017-07-18 Potem  POTE ankyrin domain family member M  RGD1563748  similar to ankyrin-like protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2014-08-25 LOC103693919  ankyrin repeat domain-containing protein 7-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 RGD1563748  similar to ankyrin-like protein   RGD1563748_predicted  similar to ankyrin-like protein (predicted)  'predicted' is removed 2292626 APPROVED
2006-11-19 LOC306365  similar to ankyrin repeat domain 26      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-03-07 RGD1563748_predicted  similar to ankyrin-like protein (predicted)  LOC290675  similar to ankyrin-like protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC290675  similar to ankyrin-like protein      Symbol and Name status set to provisional 70820 PROVISIONAL