Spata16 (spermatogenesis associated 16) - Rat Genome Database

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Gene: Spata16 (spermatogenesis associated 16) Rattus norvegicus
Analyze
Symbol: Spata16
Name: spermatogenesis associated 16
RGD ID: 1563726
Description: Predicted to be involved in spermatid development. Predicted to be active in Golgi apparatus. Human ortholog(s) of this gene implicated in spermatogenic failure 6. Orthologous to human SPATA16 (spermatogenesis associated 16); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; N,N-diethyl-m-toluamide.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC294932; RGD1563726; similar to Nyd-sp12 protein; spermatogenesis-associated protein 16
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82111,413,958 - 111,794,348 (+)NCBIGRCr8
mRatBN7.22109,485,287 - 109,865,665 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2109,485,274 - 109,865,659 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.02112,281,326 - 112,659,911 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2112,281,376 - 112,659,927 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02132,316,091 - 132,380,997 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02132,001,122 - 132,294,134 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42112,490,919 - 112,853,681 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2104,707,131 - 105,078,173 (+)NCBICelera
Cytogenetic Map2q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
Golgi apparatus  (IBA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12529416   PMID:29065458  


Genomics

Comparative Map Data
Spata16
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82111,413,958 - 111,794,348 (+)NCBIGRCr8
mRatBN7.22109,485,287 - 109,865,665 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2109,485,274 - 109,865,659 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.02112,281,326 - 112,659,911 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2112,281,376 - 112,659,927 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02132,316,091 - 132,380,997 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02132,001,122 - 132,294,134 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42112,490,919 - 112,853,681 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2104,707,131 - 105,078,173 (+)NCBICelera
Cytogenetic Map2q24NCBI
SPATA16
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383172,889,357 - 173,141,235 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3172,889,357 - 173,141,235 (-)EnsemblGRCh38hg38GRCh38
GRCh373172,607,147 - 172,859,025 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363174,089,841 - 174,341,695 (-)NCBINCBI36Build 36hg18NCBI36
Build 343174,089,851 - 174,341,703NCBI
Celera3171,006,118 - 171,258,045 (-)NCBICelera
Cytogenetic Map3q26.31NCBI
HuRef3169,978,096 - 170,229,599 (-)NCBIHuRef
CHM1_13172,570,042 - 172,821,943 (-)NCBICHM1_1
T2T-CHM13v2.03175,675,113 - 175,927,030 (-)NCBIT2T-CHM13v2.0
Spata16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39326,691,769 - 27,037,398 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl326,691,769 - 27,037,361 (+)EnsemblGRCm39 Ensembl
GRCm38326,637,620 - 26,983,249 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl326,637,620 - 26,983,212 (+)EnsemblGRCm38mm10GRCm38
MGSCv37326,536,553 - 26,882,134 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36326,828,704 - 27,174,287 (+)NCBIMGSCv36mm8
Celera326,610,852 - 26,954,772 (+)NCBICelera
Cytogenetic Map3A3NCBI
cM Map310.74NCBI
Spata16
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554202,910,749 - 3,134,202 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554202,910,780 - 3,134,177 (-)NCBIChiLan1.0ChiLan1.0
SPATA16
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22170,774,017 - 170,986,973 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13170,778,735 - 170,991,691 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03169,898,861 - 170,156,969 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13178,079,118 - 178,335,617 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3178,079,118 - 178,335,617 (-)Ensemblpanpan1.1panPan2
SPATA16
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13436,995,326 - 37,231,346 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3436,972,308 - 37,231,682 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3446,006,914 - 46,242,818 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03437,080,462 - 37,317,220 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3437,079,521 - 37,317,474 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13437,017,887 - 37,254,214 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03436,987,343 - 37,223,489 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03437,244,458 - 37,480,669 (-)NCBIUU_Cfam_GSD_1.0
Spata16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602103,757,903 - 103,996,099 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936703125,603 - 339,700 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936703125,603 - 339,700 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPATA16
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13111,397,190 - 111,643,986 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113111,397,368 - 111,609,539 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SPATA16
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11516,283,640 - 16,540,132 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1516,307,852 - 16,539,918 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606325,038,451 - 25,301,165 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Spata16
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473050,913,852 - 51,154,691 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473050,913,919 - 51,154,612 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Spata16
2359 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:79
Count of miRNA genes:68
Interacting mature miRNAs:70
Transcripts:ENSRNOT00000035263
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293671Bss44Bone structure and strength QTL 4410.970.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)243162366148478373Rat
631566Bp90Blood pressure QTL 900.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2102803808147803808Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1598865Bp296Blood pressure QTL 2962.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)281018907126018907Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1578772Stresp14Stress response QTL 1450.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)282345893130923501Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
2293676Bmd19Bone mineral density QTL 1910.70.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)243162366111362592Rat
2293682Bmd24Bone mineral density QTL 248.90.0001femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)243162366111362592Rat
1598862Glom9Glomerulus QTL 93.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)292337601137337601Rat
631198Cm22Cardiac mass QTL 224.30.0008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)276539322150540526Rat
1598863Cm65Cardiac mass QTL 652.3heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)292337601137337601Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)278665619219826953Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)256043031202447032Rat
2300165Bmd49Bone mineral density QTL 494.80.0001lumbar vertebra mineral mass (VT:0010511)bone mineral density (CMO:0001226)288862519133862519Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
2300170Bmd45Bone mineral density QTL 4512.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)288862519133862519Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
7411551Bw131Body weight QTL 13129.60.001body mass (VT:0001259)body weight gain (CMO:0000420)267942638112942638Rat
8662836Vetf8Vascular elastic tissue fragility QTL 80.66thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2104559726149559726Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118275202447032Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)281689826221035911Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)226917817136917119Rat
2299162Iddm32Insulin dependent diabetes mellitus QTL 322.36blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)278665616143657569Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
2300185Bmd46Bone mineral density QTL 468.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)288862519133862519Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)276539322202447032Rat
61392Bp6Blood pressure QTL 67arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)280270434125270434Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607157142209Rat
1558653Prcr1Prostate cancer resistance QTL 15prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)272532993157142209Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)281754530222436696Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246123260202447032Rat
7207808Bmd89Bone mineral density QTL 894.1femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)288862519133862519Rat
1558648Smcn1Smooth muscle cell number QTL 10.039blood vessel smooth muscle cell quantity (VT:0010525)aorta smooth muscle cell count per unit vessel length (CMO:0001646)259134147127460910Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607182042367Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)274786664206665859Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243171017184114403Rat
61438Cia7Collagen induced arthritis QTL 74.60.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)259324377141596857Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)226917817127469484Rat

Markers in Region
D2Got79  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22109,776,051 - 109,776,313 (+)MAPPERmRatBN7.2
Rnor_6.02112,574,320 - 112,574,581NCBIRnor6.0
Rnor_5.02132,296,287 - 132,296,548UniSTSRnor5.0
RGSC_v3.42112,755,085 - 112,755,347RGDRGSC3.4
RGSC_v3.42112,755,086 - 112,755,347UniSTSRGSC3.4
RGSC_v3.12112,700,048 - 112,700,309RGD
Celera2104,990,174 - 104,990,431UniSTS
RH 3.4 Map2728.2RGD
RH 3.4 Map2728.2UniSTS
Cytogenetic Map2q24UniSTS
D2Mco24  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02112,283,118 - 112,283,450NCBIRnor6.0
Rnor_5.02131,999,477 - 131,999,809UniSTSRnor5.0
RGSC_v3.42112,451,195 - 112,451,402RGDRGSC3.4
RGSC_v3.42112,451,196 - 112,451,402UniSTSRGSC3.4
Celera2104,708,921 - 104,709,121UniSTS
Cytogenetic Map2q24UniSTS
U85926  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02112,283,118 - 112,283,450NCBIRnor6.0
Rnor_5.02131,999,477 - 131,999,809UniSTSRnor5.0
RGSC_v3.42112,451,196 - 112,451,402UniSTSRGSC3.4
Celera2104,708,921 - 104,709,121UniSTS
Cytogenetic Map2q24UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system appendage
High
Medium 7
Low
Below cutoff 1 1 2 1 2 2 7 4 1 2

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_001063250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000035263   ⟹   ENSRNOP00000033704
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2109,485,274 - 109,865,659 (+)Ensembl
Rnor_6.0 Ensembl2112,281,376 - 112,659,927 (+)Ensembl
RefSeq Acc Id: XM_008760900   ⟹   XP_008759122
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82111,413,997 - 111,794,348 (+)NCBI
mRatBN7.22109,485,288 - 109,865,665 (+)NCBI
Rnor_6.02112,281,326 - 112,659,911 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039103601   ⟹   XP_038959529
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82111,414,024 - 111,793,983 (+)NCBI
mRatBN7.22109,485,288 - 109,865,311 (+)NCBI
RefSeq Acc Id: XM_039103602   ⟹   XP_038959530
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82111,414,025 - 111,793,983 (+)NCBI
mRatBN7.22109,485,337 - 109,865,315 (+)NCBI
RefSeq Acc Id: XM_039103603   ⟹   XP_038959531
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82111,413,988 - 111,793,983 (+)NCBI
mRatBN7.22109,485,287 - 109,865,315 (+)NCBI
RefSeq Acc Id: XM_039103604   ⟹   XP_038959532
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82111,413,958 - 111,793,988 (+)NCBI
mRatBN7.22109,485,288 - 109,865,317 (+)NCBI
RefSeq Acc Id: XM_063282697   ⟹   XP_063138767
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82111,414,027 - 111,794,348 (+)NCBI
RefSeq Acc Id: XM_063282698   ⟹   XP_063138768
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82111,415,783 - 111,794,348 (+)NCBI
RefSeq Acc Id: XM_063282699   ⟹   XP_063138769
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82111,413,988 - 111,794,348 (+)NCBI
RefSeq Acc Id: XM_063282700   ⟹   XP_063138770
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82111,414,024 - 111,794,348 (+)NCBI
RefSeq Acc Id: XM_063282701   ⟹   XP_063138771
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82111,414,008 - 111,794,007 (+)NCBI
RefSeq Acc Id: XP_008759122   ⟸   XM_008760900
- Peptide Label: isoform X2
- UniProtKB: D4A260 (UniProtKB/TrEMBL),   A6IHF1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000033704   ⟸   ENSRNOT00000035263
RefSeq Acc Id: XP_038959531   ⟸   XM_039103603
- Peptide Label: isoform X1
- UniProtKB: A6IHF2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959532   ⟸   XM_039103604
- Peptide Label: isoform X3
- UniProtKB: A6IHF2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959529   ⟸   XM_039103601
- Peptide Label: isoform X1
- UniProtKB: A6IHF2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959530   ⟸   XM_039103602
- Peptide Label: isoform X1
- UniProtKB: A6IHF2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138769   ⟸   XM_063282699
- Peptide Label: isoform X2
- UniProtKB: A6IHF1 (UniProtKB/TrEMBL),   D4A260 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138771   ⟸   XM_063282701
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063138770   ⟸   XM_063282700
- Peptide Label: isoform X4
- UniProtKB: A6IHF1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138767   ⟸   XM_063282697
- Peptide Label: isoform X2
- UniProtKB: A6IHF1 (UniProtKB/TrEMBL),   D4A260 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138768   ⟸   XM_063282698
- Peptide Label: isoform X2
- UniProtKB: A6IHF1 (UniProtKB/TrEMBL),   D4A260 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A260-F1-model_v2 AlphaFold D4A260 1-571 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691265
Promoter ID:EPDNEW_R1786
Type:single initiation site
Name:Spata16_1
Description:spermatogenesis associated 16
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02112,281,395 - 112,281,455EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1563726 AgrOrtholog
BioCyc Gene G2FUF-53521 BioCyc
Ensembl Genes ENSRNOG00000024521 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000035263 ENTREZGENE
  ENSRNOT00000035263.7 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
InterPro SPATA16 UniProtKB/TrEMBL
  TPR-like_helical UniProtKB/TrEMBL
KEGG Report rno:294932 UniProtKB/TrEMBL
NCBI Gene 294932 ENTREZGENE
PANTHER PTHR47228 UniProtKB/TrEMBL
  SPERMATOGENESIS-ASSOCIATED PROTEIN 16 UniProtKB/TrEMBL
Pfam NYD-SP12_N UniProtKB/TrEMBL
PhenoGen Spata16 PhenoGen
RatGTEx ENSRNOG00000024521 RatGTEx
Superfamily-SCOP SSF48452 UniProtKB/TrEMBL
UniProt A6IHF1 ENTREZGENE, UniProtKB/TrEMBL
  A6IHF2 ENTREZGENE, UniProtKB/TrEMBL
  D4A260 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-06 Spata16  spermatogenesis associated 16  RGD1563726_predicted  similar to Nyd-sp12 protein (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1563726_predicted  similar to Nyd-sp12 protein (predicted)  LOC294932  similar to Nyd-sp12 protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC294932  similar to Nyd-sp12 protein      Symbol and Name status set to provisional 70820 PROVISIONAL