Ckap5 (cytoskeleton associated protein 5) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Ckap5 (cytoskeleton associated protein 5) Rattus norvegicus
Analyze
Symbol: Ckap5
Name: cytoskeleton associated protein 5
RGD ID: 1563596
Description: Predicted to enable microtubule binding activity; microtubule plus end polymerase; and ribonucleoprotein complex binding activity. Predicted to be involved in microtubule cytoskeleton organization and positive regulation of microtubule nucleation. Predicted to act upstream of or within several processes, including central nervous system myelin formation; dendritic spine maintenance; and learning. Predicted to be located in several cellular components, including neuronal ribonucleoprotein granule; nucleolus; and perikaryon. Predicted to be part of protein-containing complex. Predicted to be active in centrosome; kinetochore; and spindle pole. Predicted to colocalize with microtubule plus-end. Orthologous to human CKAP5 (cytoskeleton associated protein 5); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cytoskeleton-associated protein 5; LOC311191; similar to colonic and hepatic tumor over-expressed protein isoform a
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8397,946,966 - 98,049,050 (+)NCBIGRCr8
mRatBN7.2377,491,195 - 77,593,300 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl377,491,276 - 77,593,264 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0380,424,320 - 80,526,583 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl380,468,154 - 80,526,593 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0387,124,448 - 87,225,813 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4375,903,605 - 76,002,422 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera376,696,182 - 76,798,097 (+)NCBICelera
Cytogenetic Map3q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,1,1-trichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dinitrotoluene  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
acrolein  (ISO)
alpha-pinene  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
cadmium dichloride  (ISO)
calyculin a  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
CU-O LINKAGE  (ISO)
D-mannitol  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (ISO)
Diisodecyl phthalate  (ISO)
Enterolactone  (ISO)
enzyme inhibitor  (ISO)
FR900359  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
menadione  (ISO)
methapyrilene  (EXP)
N,N-diethyl-m-toluamide  (EXP)
N-methyl-N-nitrosourea  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
pentachlorophenol  (ISO)
permethrin  (EXP)
phenobarbital  (ISO)
phenol red  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
resveratrol  (ISO)
sevoflurane  (ISO)
sodium arsenite  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
tetrahydropalmatine  (ISO)
thapsigargin  (ISO)
topotecan  (EXP)
Tributyltin oxide  (ISO)
trichloroethene  (EXP)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
trovafloxacin  (ISO)
tungsten  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:10770946   PMID:14718566   PMID:15703215   PMID:17634360   PMID:18468998   PMID:19946888   PMID:21399614   PMID:21646404   PMID:25468996   PMID:25596274   PMID:26414402   PMID:28063167  


Genomics

Comparative Map Data
Ckap5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8397,946,966 - 98,049,050 (+)NCBIGRCr8
mRatBN7.2377,491,195 - 77,593,300 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl377,491,276 - 77,593,264 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0380,424,320 - 80,526,583 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl380,468,154 - 80,526,593 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0387,124,448 - 87,225,813 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4375,903,605 - 76,002,422 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera376,696,182 - 76,798,097 (+)NCBICelera
Cytogenetic Map3q24NCBI
CKAP5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381146,743,048 - 46,846,280 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1146,743,048 - 46,846,308 (-)EnsemblGRCh38hg38GRCh38
GRCh371146,764,598 - 46,867,831 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361146,721,660 - 46,824,419 (-)NCBINCBI36Build 36hg18NCBI36
Celera1146,913,051 - 47,013,611 (-)NCBICelera
Cytogenetic Map11p11.2NCBI
HuRef1146,470,971 - 46,573,773 (-)NCBIHuRef
CHM1_11146,763,483 - 46,866,270 (-)NCBICHM1_1
T2T-CHM13v2.01146,899,874 - 47,003,159 (-)NCBIT2T-CHM13v2.0
Ckap5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39291,357,092 - 91,451,024 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl291,357,107 - 91,451,009 (+)EnsemblGRCm39 Ensembl
GRCm38291,526,747 - 91,620,679 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl291,526,762 - 91,620,664 (+)EnsemblGRCm38mm10GRCm38
MGSCv37291,386,479 - 91,460,822 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36291,347,180 - 91,421,504 (+)NCBIMGSCv36mm8
Celera292,935,690 - 93,010,177 (+)NCBICelera
Cytogenetic Map2E1NCBI
cM Map250.63NCBI
Ckap5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554221,279,158 - 1,353,894 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554221,266,686 - 1,354,323 (+)NCBIChiLan1.0ChiLan1.0
CKAP5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2948,949,653 - 49,052,203 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11148,969,410 - 49,071,973 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01146,694,967 - 46,797,500 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11147,252,269 - 47,353,770 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1147,252,752 - 47,329,274 (-)Ensemblpanpan1.1panPan2
CKAP5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11842,673,432 - 42,780,320 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1842,711,471 - 42,780,090 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1841,403,038 - 41,509,238 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01843,329,658 - 43,436,336 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1843,329,680 - 43,436,334 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11842,815,144 - 42,921,639 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01842,370,301 - 42,476,795 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01843,100,004 - 43,206,556 (+)NCBIUU_Cfam_GSD_1.0
Ckap5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494720,157,680 - 20,257,456 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365622,269,332 - 2,371,224 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365622,269,341 - 2,369,098 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CKAP5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl215,680,787 - 15,790,569 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1215,680,723 - 15,790,580 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2217,094,654 - 17,142,320 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CKAP5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1118,504,588 - 18,584,635 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl118,484,372 - 18,586,623 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038115,767,712 - 115,866,891 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ckap5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247671,761,733 - 1,874,534 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247671,761,983 - 1,874,534 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ckap5
423 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:166
Count of miRNA genes:69
Interacting mature miRNAs:73
Transcripts:ENSRNOT00000021837, ENSRNOT00000066005
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)34382736490905114Rat
61377Edpm3Estrogen-dependent pituitary mass QTL 37.050.038pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)35318469289878207Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)370653097121056321Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1331795Rf30Renal function QTL 303.708urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)33945463789115240Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)353184593115665732Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)33370334778196190Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1331777Bw24Body weight QTL 243.503body mass (VT:0001259)body weight (CMO:0000012)33945463789115240Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)364655305115665732Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)364655305115665732Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)361017749121056321Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)350437504115638231Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)373376539118376539Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)343827364121056321Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
731180Bp152Blood pressure QTL 1520.03arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35378111291609953Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)33851780383517803Rat
631200Cm25Cardiac mass QTL 254.80.0001heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)36113434889115068Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)33035677398535386Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)370348525121056321Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)341874578104104347Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)333703347104104347Rat
631665Bw8Body weight QTL 85.5body mass (VT:0001259)body weight (CMO:0000012)350437042119183768Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat

Markers in Region
RH137917  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2377,516,725 - 77,516,884 (+)MAPPERmRatBN7.2
Rnor_6.0380,449,989 - 80,450,147NCBIRnor6.0
Rnor_5.0387,150,549 - 87,150,707UniSTSRnor5.0
RGSC_v3.4375,909,387 - 75,909,545UniSTSRGSC3.4
Celera376,721,667 - 76,721,825UniSTS
Cytogenetic Map3q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001426928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC107910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000021837   ⟹   ENSRNOP00000021837
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl377,491,276 - 77,593,264 (+)Ensembl
Rnor_6.0 Ensembl380,468,154 - 80,526,593 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000102308   ⟹   ENSRNOP00000077514
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl377,491,276 - 77,593,264 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000107972   ⟹   ENSRNOP00000084840
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl377,491,276 - 77,593,264 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000119801   ⟹   ENSRNOP00000094312
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl377,491,276 - 77,593,264 (+)Ensembl
RefSeq Acc Id: NM_001426928   ⟹   NP_001413857
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,947,048 - 98,049,050 (+)NCBI
RefSeq Acc Id: XM_017592175   ⟹   XP_017447664
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,946,966 - 98,049,050 (+)NCBI
mRatBN7.2377,491,195 - 77,593,300 (+)NCBI
Rnor_6.0380,454,584 - 80,526,583 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039106802   ⟹   XP_038962730
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,947,314 - 98,049,050 (+)NCBI
mRatBN7.2377,491,629 - 77,593,300 (+)NCBI
RefSeq Acc Id: XM_039106803   ⟹   XP_038962731
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,947,212 - 98,049,050 (+)NCBI
mRatBN7.2377,491,546 - 77,593,300 (+)NCBI
RefSeq Acc Id: XM_063283661   ⟹   XP_063139731
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,946,993 - 98,049,050 (+)NCBI
RefSeq Acc Id: XM_063283662   ⟹   XP_063139732
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,946,993 - 98,049,050 (+)NCBI
RefSeq Acc Id: XM_063283663   ⟹   XP_063139733
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,961,982 - 98,049,050 (+)NCBI
RefSeq Acc Id: XM_063283664   ⟹   XP_063139734
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,946,993 - 98,049,050 (+)NCBI
RefSeq Acc Id: XM_063283665   ⟹   XP_063139735
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,946,995 - 98,049,050 (+)NCBI
RefSeq Acc Id: XM_063283666   ⟹   XP_063139736
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,947,206 - 98,049,050 (+)NCBI
RefSeq Acc Id: XM_063283667   ⟹   XP_063139737
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,946,995 - 98,049,050 (+)NCBI
RefSeq Acc Id: XM_063283668   ⟹   XP_063139738
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,961,982 - 98,049,050 (+)NCBI
RefSeq Acc Id: XP_017447664   ⟸   XM_017592175
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ALB1 (UniProtKB/TrEMBL),   A6HNC8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000021837   ⟸   ENSRNOT00000021837
RefSeq Acc Id: XP_038962731   ⟸   XM_039106803
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ALB1 (UniProtKB/TrEMBL),   A6HNC8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962730   ⟸   XM_039106802
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ALB1 (UniProtKB/TrEMBL),   A6HNC8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000077514   ⟸   ENSRNOT00000102308
Ensembl Acc Id: ENSRNOP00000094312   ⟸   ENSRNOT00000119801
Ensembl Acc Id: ENSRNOP00000084840   ⟸   ENSRNOT00000107972
RefSeq Acc Id: XP_063139734   ⟸   XM_063283664
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ALB1 (UniProtKB/TrEMBL),   A6HNC8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139732   ⟸   XM_063283662
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ALB1 (UniProtKB/TrEMBL),   A6HNC8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139731   ⟸   XM_063283661
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ALB1 (UniProtKB/TrEMBL),   A6HNC8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139737   ⟸   XM_063283667
- Peptide Label: isoform X2
- UniProtKB: F1M949 (UniProtKB/TrEMBL),   A6HNC8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139735   ⟸   XM_063283665
- Peptide Label: isoform X2
- UniProtKB: F1M949 (UniProtKB/TrEMBL),   A6HNC8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001413857   ⟸   NM_001426928
- UniProtKB: F1M949 (UniProtKB/TrEMBL),   A6HNC8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139736   ⟸   XM_063283666
- Peptide Label: isoform X2
- UniProtKB: F1M949 (UniProtKB/TrEMBL),   A6HNC8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139733   ⟸   XM_063283663
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ALB1 (UniProtKB/TrEMBL),   A6HNC8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139738   ⟸   XM_063283668
- Peptide Label: isoform X2
- UniProtKB: F1M949 (UniProtKB/TrEMBL),   A6HNC8 (UniProtKB/TrEMBL)
Protein Domains
TOG

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M949-F1-model_v2 AlphaFold F1M949 1-1698 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1563596 AgrOrtholog
BioCyc Gene G2FUF-48730 BioCyc
Ensembl Genes ENSRNOG00000016067 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000021837.9 UniProtKB/TrEMBL
  ENSRNOT00000102308.1 UniProtKB/TrEMBL
  ENSRNOT00000107972.1 UniProtKB/TrEMBL
  ENSRNOT00000119801.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7453732 IMAGE-MGC_LOAD
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  CLASP_N_dom UniProtKB/TrEMBL
  HEAT UniProtKB/TrEMBL
  HEAT_type_2 UniProtKB/TrEMBL
  TOG UniProtKB/TrEMBL
  XMAP215 UniProtKB/TrEMBL
  XMAP215_CLASP_TOG UniProtKB/TrEMBL
MGC_CLONE MGC:125219 IMAGE-MGC_LOAD
NCBI Gene 311191 ENTREZGENE
PANTHER CYTOSKELETON-ASSOCIATED PROTEIN 5 UniProtKB/TrEMBL
  PTHR12609 UniProtKB/TrEMBL
Pfam CLASP_N UniProtKB/TrEMBL
  HEAT UniProtKB/TrEMBL
  XMAP215_CLASP_TOG UniProtKB/TrEMBL
PhenoGen Ckap5 PhenoGen
PROSITE HEAT_REPEAT UniProtKB/TrEMBL
RatGTEx ENSRNOG00000016067 RatGTEx
SMART TOG UniProtKB/TrEMBL
Superfamily-SCOP ARM-type_fold UniProtKB/TrEMBL
UniProt A0A8I5YCE4_RAT UniProtKB/TrEMBL
  A0A8I6ALB1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GB38_RAT UniProtKB/TrEMBL
  A6HNC8 ENTREZGENE, UniProtKB/TrEMBL
  A6HNC9_RAT UniProtKB/TrEMBL
  F1M949 ENTREZGENE, UniProtKB/TrEMBL
  Q32Q01_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Ckap5  cytoskeleton associated protein 5  LOC311191  similar to colonic and hepatic tumor over-expressed protein isoform a  Symbol and Name updated 1299863 APPROVED
2006-02-09 LOC311191  similar to colonic and hepatic tumor over-expressed protein isoform a      Symbol and Name status set to provisional 70820 PROVISIONAL