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Gene: Nol4l (nucleolar protein 4-like) Rattus norvegicus

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Symbol:

Nol4l

Name:

nucleolar protein 4-like

RGD ID:

1563510

Description:

Predicted to be located in cytosol and nucleoplasm. Orthologous to human NOL4L (nucleolar protein 4 like); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; all-trans-retinoic acid; alpha-Zearalanol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC362240; RGD1563510; similar to RIKEN cDNA 8430427H17 gene

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NOL4L (nucleolar protein 4 like)	HGNC	Ensembl, NCBI, OMA, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Nol4l (nucleolar protein 4-like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Nol4l (nucleolar protein 4 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	NOL4L (nucleolar protein 4 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	NOL4L (nucleolar protein 4 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Nol4l (nucleolar protein 4 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NOL4L (nucleolar protein 4 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	NOL4L (nucleolar protein 4 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Nol4l (nucleolar protein 4 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	RPL15 (ribosomal protein L15)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	NOL4L (nucleolar protein 4 like)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Nol4l (nucleolar protein 4-like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	nol4la (nucleolar protein 4-like a)	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	nol4lb (nucleolar protein 4-like b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	nol4lb (nucleolar protein 4-like b)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG46301	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG46301	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	nol4l	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder)
Xenopus tropicalis (tropical clawed frog):	nol4l	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	162,345,059 - 162,467,849 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	162,348,211 - 162,468,048 (-)	Ensembl				GRCr8
mRatBN7.2	3	141,884,840 - 142,007,668 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	141,884,840 - 142,008,976 (-)	Ensembl				mRatBN7.2
Rnor_6.0	3	148,905,677 - 148,940,426 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	148,909,826 - 148,932,878 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	155,164,662 - 155,199,419 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	143,774,195 - 143,904,844 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	140,630,872 - 140,713,937 (-)	NCBI		Celera
Cytogenetic Map	3	q41	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

immunodeficiency-centromeric instability-facial anomalies syndrome 1 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (EXP,ISO)

alpha-Zearalanol (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

calcitriol (ISO)

carbamazepine (ISO)

casticin (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

crocidolite asbestos (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP)

dicrotophos (ISO)

doxorubicin (ISO)

endosulfan (EXP)

epoxiconazole (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

folic acid (ISO)

FR900359 (ISO)

fulvestrant (ISO)

gentamycin (EXP)

methapyrilene (ISO)

methylmercury chloride (ISO)

nickel sulfate (ISO)

paracetamol (EXP,ISO)

pentanal (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (EXP)

rotenone (ISO)

silicon dioxide (ISO)

sinapic acid (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

testosterone (ISO)

trichostatin A (ISO)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

vincristine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cytosol (ISO)

nucleoplasm (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Nol4l
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	162,345,059 - 162,467,849 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	162,348,211 - 162,468,048 (-)	Ensembl				GRCr8
mRatBN7.2	3	141,884,840 - 142,007,668 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	141,884,840 - 142,008,976 (-)	Ensembl				mRatBN7.2
Rnor_6.0	3	148,905,677 - 148,940,426 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	148,909,826 - 148,932,878 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	155,164,662 - 155,199,419 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	143,774,195 - 143,904,844 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	140,630,872 - 140,713,937 (-)	NCBI		Celera
Cytogenetic Map	3	q41	NCBI

NOL4L
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	32,443,059 - 32,585,333 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	32,443,059 - 32,585,333 (-)	Ensembl			hg38	GRCh38
GRCh37	20	31,030,862 - 31,173,135 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	30,498,330 - 30,534,849 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	20	30,498,329 - 30,534,849	NCBI
Celera	20	27,786,886 - 27,827,327 (-)	NCBI		Celera
Cytogenetic Map	20	q11.21	NCBI
HuRef	20	27,820,335 - 27,962,388 (-)	NCBI		HuRef
CHM1_1	20	30,935,784 - 31,077,756 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	20	34,167,910 - 34,310,868 (-)	NCBI		T2T-CHM13v2.0

Nol4l
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	153,249,381 - 153,371,869 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	153,249,382 - 153,371,891 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	153,407,461 - 153,530,239 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	153,407,462 - 153,529,971 (-)	Ensembl			mm10	GRCm38
MGSCv37	2	153,233,197 - 153,355,707 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	153,098,907 - 153,175,224 (-)	NCBI		MGSCv36	mm8
Celera	2	159,249,852 - 159,371,922 (-)	NCBI		Celera
Cytogenetic Map	2	H1	NCBI
cM Map	2	75.41	NCBI

Nol4l
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	28,583,383 - 28,658,983 (+)	Ensembl
ChiLan1.0	NW_004955422	28,575,749 - 28,658,983 (+)	NCBI	ChiLan1.0	ChiLan1.0

NOL4L
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	38,134,606 - 38,277,092 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	38,127,705 - 38,270,191 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	28,731,600 - 28,874,116 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	29,856,168 - 29,948,479 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	29,856,168 - 29,940,084 (-)	Ensembl			panPan2	panpan1.1

NOL4L
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	21,808,726 - 21,939,596 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	21,812,659 - 21,940,039 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	21,456,319 - 21,586,607 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	22,497,864 - 22,628,090 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	22,497,867 - 22,628,689 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	21,773,470 - 21,904,028 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	21,881,601 - 22,012,017 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	22,312,374 - 22,442,940 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Nol4l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	170,869,425 - 170,948,065 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936485	19,300,110 - 19,371,672 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936485	19,300,789 - 19,338,374 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NOL4L
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	36,073,655 - 36,201,145 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	17	36,070,836 - 36,201,035 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	40,987,898 - 41,067,223 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NOL4L
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	36,814,605 - 36,953,902 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	36,819,120 - 36,953,805 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666050	89,947,584 - 90,095,558 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Nol4l
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624741	68,002 - 185,641 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624741	68,002 - 185,545 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Variants

Variants in Nol4l
429 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	133
Count of miRNA genes:	108
Interacting mature miRNAs:	110
Transcripts:	ENSRNOT00000013881
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2312673	Scl63	Serum cholesterol level QTL 63		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	98535255	168026850	Rat
1578653	Vnigr3	Vascular neointimal growth QTL 3	3.1		artery morphology trait (VT:0002191)	artery neointimal hyperplastic lesion area (CMO:0001414)	3	130656562	169034231	Rat
1598877	Bp285	Blood pressure QTL 285	1.5	0.03	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	120538241	165538241	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	98535386	161695835	Rat
1298068	Bp167	Blood pressure QTL 167		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	141074471	169034231	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	31172320	163586636	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	47233211	147415807	Rat
2298477	Eau4	Experimental allergic uveoretinitis QTL 4		0.0011	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	3	137398739	169034231	Rat
61335	Bp20	Blood pressure QTL 20	3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	141339236	155617360	Rat
1581568	Rf53	Renal function QTL 53			urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	3	56395968	161299569	Rat
1331726	Bp208	Blood pressure QTL 208	3.129		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	141339013	162184794	Rat
1578754	Stresp16	Stress response QTL 16	4	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	3	112681431	157681431	Rat
1300173	Rf11	Renal function QTL 11	3.38		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	121056165	145956249	Rat
9589106	Insul23	Insulin level QTL 23	13.86	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	3	131635904	169034231	Rat
10755461	Coatc16	Coat color QTL 16			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	3	122438700	167438700	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	59242096	157323038	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	43827364	169034231	Rat
1354611	Despr2	Despair related QTL 2	3.03	0.0028	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	3	97084464	142084464	Rat
2303620	Vencon4	Ventilatory control QTL 4	3.9		respiration trait (VT:0001943)	tidal volume (CMO:0000222)	3	127162703	168026850	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	94856903	159898684	Rat
1576306	Schws3	Schwannoma susceptibility QTL 3		0.001	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	3	118839124	163839124	Rat
619618	Rf3	Renal disease susceptibility QTL 3	6.5	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate to body weight ratio (CMO:0001270)	3	107693393	152693393	Rat
1300159	Kidm4	Kidney mass QTL 4	3.83		kidney mass (VT:0002707)	right kidney wet weight to body weight ratio (CMO:0001953)	3	121056165	157309487	Rat
5686842	Rf59	Renal function QTL 59			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	3	140069424	146976080	Rat
631673	Iddm13	Insulin dependent diabetes mellitus QTL 13	1.3	0.663	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	3	130193298	161695983	Rat
2312659	Slep7	Serum leptin concentration QTL 7		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	3	98535255	168026850	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	41874578	155617519	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	41874578	155617519	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	78196190	146592722	Rat
1578656	Vnigr2	Vascular neointimal growth QTL 2	4.2		artery morphology trait (VT:0002191)	lesioned artery residual lumen area (CMO:0001417)	3	130656562	169034231	Rat
8552952	Pigfal13	Plasma insulin-like growth factor 1 level QTL 13			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	3	138799500	169034231	Rat
631541	Bp81	Blood pressure QTL 81	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	124122556	169034231	Rat
2312670	Bw94	Body weight QTL 94		0.01	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	3	98535255	168026850	Rat
2293087	Iddm27	Insulin dependent diabetes mellitus QTL 27	2.68		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	97551417	147415807	Rat

Markers in Region

RH139888

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	141,885,160 - 141,885,349 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	148,905,994 - 148,906,182	NCBI	Rnor6.0
Rnor_5.0	3	155,198,914 - 155,199,102	UniSTS	Rnor5.0
RGSC_v3.4	3	143,771,160 - 143,771,348	UniSTS	RGSC3.4
Celera	3	140,631,189 - 140,631,377	UniSTS
Cytogenetic Map	3	q41	UniSTS

RH135199

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	141,886,156 - 141,886,374 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	148,906,990 - 148,907,207	NCBI	Rnor6.0
Rnor_5.0	3	155,197,889 - 155,198,106	UniSTS	Rnor5.0
RGSC_v3.4	3	143,772,156 - 143,772,373	UniSTS	RGSC3.4
Celera	3	140,632,185 - 140,632,402	UniSTS
RH 3.4 Map	3	1265.2	UniSTS
Cytogenetic Map	3	q41	UniSTS

RH138134

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	141,888,664 - 141,888,787 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	148,909,498 - 148,909,620	NCBI	Rnor6.0
Rnor_5.0	3	155,195,476 - 155,195,598	UniSTS	Rnor5.0
RGSC_v3.4	3	143,774,664 - 143,774,786	UniSTS	RGSC3.4
Celera	3	140,634,690 - 140,634,812	UniSTS
RH 3.4 Map	3	1274.4	UniSTS
Cytogenetic Map	3	q41	UniSTS

AU048569

Rat Assembly	Chr	Position (strand)	Source
Celera	3	140,688,729 - 140,688,792	UniSTS
Celera	3	140,688,729 - 140,688,812	UniSTS
Cytogenetic Map	3	q41	UniSTS

D17S802

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	3	155,184,712 - 155,185,467	UniSTS	Rnor5.0
RGSC_v3.4	20	4,369,896 - 4,370,394	UniSTS	RGSC3.4
RGSC_v3.4	2	227,893,021 - 227,893,896	UniSTS	RGSC3.4
Celera	20	5,968,749 - 5,969,247	UniSTS
Celera	2	211,247,899 - 211,248,773	UniSTS
Cytogenetic Map	3	q41	UniSTS
Cytogenetic Map	20	p12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001430488	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001430489	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001430490	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224708	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224709	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224711	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224713	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224714	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762398	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762399	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775581	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775583	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592252	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106671	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106672	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106673	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106674	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106675	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106676	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106677	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106678	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106679	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285085	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285086	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_342547	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474050	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000013881 ⟹ ENSRNOP00000013881

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	162,348,211 - 162,467,555 (-)	Ensembl
mRatBN7.2 Ensembl	3	141,884,840 - 142,008,976 (-)	Ensembl
Rnor_6.0 Ensembl	3	148,909,826 - 148,932,878 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000142233 ⟹ ENSRNOP00000104203

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	162,348,211 - 162,468,048 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000152449 ⟹ ENSRNOP00000106024

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	162,348,211 - 162,419,477 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000169354 ⟹ ENSRNOP00000105437

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	162,348,211 - 162,430,851 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000172561 ⟹ ENSRNOP00000103233

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	162,348,211 - 162,382,002 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000173769 ⟹ ENSRNOP00000111697

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	162,348,211 - 162,468,048 (-)	Ensembl

RefSeq Acc Id:

XM_039106671 ⟹ XP_038962599

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	162,345,059 - 162,467,849 (-)	NCBI
mRatBN7.2	3	141,884,840 - 142,007,638 (-)	NCBI

RefSeq Acc Id:

XM_039106672 ⟹ XP_038962600

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	162,345,059 - 162,467,849 (-)	NCBI
mRatBN7.2	3	141,884,840 - 142,007,668 (-)	NCBI

RefSeq Acc Id:

XM_039106673 ⟹ XP_038962601

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	162,345,059 - 162,431,498 (-)	NCBI
mRatBN7.2	3	141,884,840 - 141,972,303 (-)	NCBI

RefSeq Acc Id:

XM_039106674 ⟹ XP_038962602

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	162,345,059 - 162,431,497 (-)	NCBI
mRatBN7.2	3	141,884,840 - 141,972,303 (-)	NCBI

RefSeq Acc Id:

XM_039106675 ⟹ XP_038962603

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	162,345,059 - 162,431,490 (-)	NCBI
mRatBN7.2	3	141,884,840 - 141,972,301 (-)	NCBI

RefSeq Acc Id:

XM_039106676 ⟹ XP_038962604

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	162,345,059 - 162,431,490 (-)	NCBI
mRatBN7.2	3	141,884,840 - 141,972,301 (-)	NCBI

RefSeq Acc Id:

XM_039106677 ⟹ XP_038962605

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	162,345,059 - 162,431,490 (-)	NCBI
mRatBN7.2	3	141,884,840 - 141,972,301 (-)	NCBI

RefSeq Acc Id:

XM_039106678 ⟹ XP_038962606

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	162,345,059 - 162,467,768 (-)	NCBI
mRatBN7.2	3	141,884,840 - 142,007,540 (-)	NCBI

RefSeq Acc Id:

XM_039106679 ⟹ XP_038962607

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	162,345,059 - 162,419,501 (-)	NCBI
mRatBN7.2	3	141,884,840 - 141,959,288 (-)	NCBI

RefSeq Acc Id:

XM_063285085 ⟹ XP_063141155

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	162,345,059 - 162,431,496 (-)	NCBI

RefSeq Acc Id:

XM_063285086 ⟹ XP_063141156

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	162,401,794 - 162,467,849 (-)	NCBI

RefSeq Acc Id:

XM_342547 ⟹ XP_342548

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	162,345,059 - 162,380,565 (-)	NCBI
mRatBN7.2	3	141,884,840 - 141,920,444 (-)	NCBI
Rnor_6.0	3	148,905,677 - 148,940,426 (-)	NCBI
Rnor_5.0	3	155,164,662 - 155,199,419 (+)	NCBI
RGSC_v3.4	3	143,774,195 - 143,904,844 (-)	RGD

Sequence:

show sequence

CTGGAGCAGTGGGGCTGTCACCGCCTCCCGCCCGGTTCACTCTCAGAGCTAGATCGCCGGTCTG
CACCTCCCCGCCCGCCCAGGATGAGACTTCTGTGAGCAGTGAAGATTTTGATATGAATGACTCC
ACATGGATGTCAGCTGACCCCCACCTGGCCTCCAGCCTGAGCCCCAACCAAGAGGAAAGGATGC
GGAGCCCGCAGAACCTCCATAGCCAGGAGGATGATGACTCCTCCTCCGAGAGCGGCAGTGGCAA
CGGCTCCTCGACCCTCAACCCATCCACCTCCAGCAGCACACAGGGTGATCCCGCCTTCCCCGAG
ATGAATGGCAACGGAGCTGCAGCCCCCATGGACTTCACTGCCAGTGCTGAGGACCAGCCCATTA
ACCTGTGTGAGAAGCTCCCGCCTGGCACAGCTCTGGGCACACCATCCTACCCCTCAGATGGCTG
CGGCACTGATGGGCTGCGGAGCCGCGTCAAGTATGGGGTAAAGAGCACTCCTGAGTCACCCCCC
TACAGCTCTGGGAGCTATGATTCCATCAAGACCGAAGTCAGTGGCTGTCCCGAGGATCTGACAG
TGGGCCGGGCCCCCGCAGCAGATGATGACGACGATGACCATGATGACCATGAGGACAATGACAA
GATGAATGACTCGGAAGGCATGGACCCTGAGCGGCTCAAGGCCTTCAATATGTTCGTGCGGCTA
TTCGTGGATGAGAACCTGGACCGCATGGTGCCCATTTCCAAGCAGCCCAAGGAGAAGATCCAGG
CCATCATTGAGTCATGCAGCCGGCAATTTCCTGAGTTCCAGGAGCGGGCCCGCAAGCGAATCCG
CACGTACCTCAAGTCCTGCCGCCGCATGAAGAAGAACGGCATGGAGATGACCAGGCCCACTCCT
CCCCACCTGACCTCAGCTATGGCAGAAAACATCCTAGCAGCTGCCTGTGAGAGTGAGACGAGAA
AGGCGGCTAAGAGGATGCGCCTGGAGATCTACCAGTCCTCACAAGAAGAACCCATAGCCCTGGA
TAAGCAGCACCCTCGGGACTCTACAGCCATCACCCATTCCACCTACTCACTGCCAGCCTCTGCC
TACTCCCAGGACCCTGTGTACGTCAATGGTGGCCTCAATTATAGCTACCGCGGCTATGGGTCCT
TGAGCAGCAACCTGCAGCCCTCCGCTTCCCTCCAGACAGGAAGTCACAGTAATGGGCCCACAGA
CCTCAGCATGAAAGGCGGGGCCTCCACCCCCACTCCTCCCACACCTACCCCTTCCAGCAACAGC
ACCAGCAGGACCATGCCCACAGCCCAGCTTAGCCCCACGGAGATCAGTGCTGTGCGGCAGCTCA
TCGCAGGCTACCGAGAGTCTGCAGCCTTCCTGCTGCGTTCTGCAGATGAACTGGAAAACCTCAT
TTTACAGCAGAACTGACCCCGCTGGCCCACAGAGTGCACGACGCCAGGGAAGGAGGCTGTCCCA
GCCTGGACCCAGCTTCCTGCCTCAACCAGTTGGTACACTGTTTTCTGAAAGAGGTGGGATCCAA
AAGAGCTGTTTCTAGCTGCACTCCAAGCATCGGAGACTTTGGGCACAAGGACACTTTTTCCTTT
TTTTTTTTTTTTAATTTCACCACACGGGTGCTCTGACCTGCTTGGAAGGAGGCCAGTGGGGCAG
CTCTAAAAGGGTTGAGGCTCCCCTGAAAAGGCACAGGGGCTGCAGCTCTATTTGGAATCACCTT
TGTGGACCCTGATGTTAGAACCCTCCCCCCCCCCAATAATTACCTTTCAAGTCTTAGGTGAGCA
GAATTGCATATTTATTGAGAAGAGCAAAAGTGGACCCTTTCTCTCCCCTTAGTAATTTATTTTT
CTGAAATGGATTCTTTTGTGTTTGTACAGATTGCCAGTCTGTGTCTGTCTAATCAGAAGGATGT
ACCCCTGTACCTAACATTCCATATCACTACACGGATGTAAGCTGGGGGCCAGCAGAGTTGGGTG
CCAGCTCACTGTCCTGAGTGCCCAGCATACCCTTGGGAAGGCCACCACACTCCACTAGGCTGTC
TTGTTGCAGATCCCAGTGCTGCCACAGGGACACTGCCAAACAGGGGGACCTCACCCACACTCAC
TACAAACAAAAGCCCCTACCCATCCTACAGAGTCCCAGTCACACGGTCACCTGTACTCTACCTC
ACACTCCAGCGTGGGCTTTTCCAGGATGTGCTCCAAGTGTGTTCTGAATGGCTGTCTCCCCAAC
TCCCACACAATGTATCTGTCTGCTGGGAGGTAAATCAGACCCAGTGTCCAAGAAGCAAGCCCAG
AGGGGCTTGGTCCTTAAAACCAGCAGCTCGCCATTGCTGGGCTCTTGAAGATGCTTGACATGAT
AGAGTCGGGAGCTAGTCAAGGACCCAGTTCTTATGAACACAGGCTCCACCCAGCCCCCAGATAA
CCTGCTAGAGGGACACTTCTCTTTGTCAAGCATCTGTGTGCCCAAGGGGGGATTACAGTTTCCA
CTCCTCACCTCACAATGGGAGTAAAGGGATCAGATCGTCAGTGAAGTGGAGAACTACTTGCATT
CTCCTAGGACCAAACTTTCTTCTGGAAAGGCCTGTCCTGTAAGAAACCCAGTCCCTGGAGTGTG
ACAAGGGACAAGAAAAAGCTGACCTGGTTTCCTTCCTCCCTGACAGGCACTTCCTTTTGCTCTG
TGCAATACCTACCAGTGCTGCTAAAACCAGGGATTCACCCAGACCTCAGCAGGCCAGGGGGCCT
CTCCCTCAACACTCCGTAGCCATGACAGCAGCACTCCGCTGCCTGCCCCTGCCCAGAGCTGGCA
GAAGCCCTGTTGCCTTTCTTCCCTCAGAGCAAGGAGGCCTCAAGGGAGCCAGGGGCTGAGTGGA
CACTAAGATAACCACAAAGAGCCACTCTTGGTCCCAAAGCGAGTGCCCCTTCCCAAACTGGTCT
ATGGCAGGGACTGCTGGTGGCAGCCTGACAGACTATCCTCAAATGGGTGGGCAGGCAGTGCCAG
TGCAGATGCCCTACCTGTTGAGATTCAGGGCTGTAAGGCAGGGCTCCCCACCCTGCACACTTCC
ACACTGGGGTTAAATGTGGTCTTTCACAGGGCCTACAATGCCTACCCAGCCACACCACCTCTGC
CTTCATGTGCCCGCTCACCAGGCTTCTGGACTGGGCCAGGACACCTGAGTCCCCTTCGTACAGC
ACAAACCCAGTGCCCAGGGCCTCCCCACAGCTGGCCGGCCATGTGCCCAGTTCCCCACCTGCTC
AGTAGGACTCCTGGATGTTTGAATTTGTGTAAATATTTATTTTTGTGTGTGAATACTTCAAAGT
AATCAGTAGATCTTTTGCAAAATGTTACCCCAGGCAATTTGTGAAAATGTTAATGTTGAAAATT
GGCAGAGACAATCGCCACCCTAGAATTTCTGTTATCAATTGCTTACCACGTTGTGTCTGCTCCC
AGAGGCAGTACCCAAGCTAGACACAAAATGGCTTGCATTTTTGAAAGAAGACAGGAGAGAAGAG
ACTAGGCAGAGGCTTCTCCCTCTCCCCTCATAGGACACATCTGTAAGAACGAGCATAATCTACA
TCTAAGTGGTGTTTTCTAACTGCAAGCAGTCTTGACCAGCCACCAGCAGCCTGCACCCAGAGTA
CAGTGTGAGCATAGGTTCCATGTGTTTTGCTTCAAGAGACATAGAACCAGTGCCAGTGCTGATG
GGTTCCCGAGGGGCTGCAGGCCAGTGGATGCTGGCATGCTGACCAGAGAAGCGGTCCCCAAAGC
CTCAGAGCAGCCATATCAGGAGCAAGTCAGTGTGGACACAGGATTCCATTATCTAGTTCAGTCA
GGGAACTTGTTCTGTTTTCCTTTTGTTTTAAAAGATGCAGCTTCAAGCCCTCCCTTCCTGATTT
GGGCCTGCCTTTTCCCAGGAGGAGCTTCTCCAAGCCTTGTCCTATAGCTACTTCAGTGTGATGG
AAGCCTCAGGGCACAAAGTAATCATTGGTGATGTCAAGTCACAATGGAAATGCAGTGTAGGATA
TTCAAACCCCAGAGTCCTCACAGGGCAGATTCCCTAAGGTATCGAGAAGTGGTGGATGATCTGC
TAGACCAGTGAGAGTGTATATGACCCATCTGAAAGGATTTTTTTTCTCTCACCACTCAACAAAT
GGACAGTTTATTCCCAAGGACGGTGTTGGGGAGGAGCAGGCAGGGGCAGGAGGGTCTTAGAGGA
CTTGGAACAGGTGGAACCCATCTGTCCCTCCCTATTCTCAAGGGCCACAAATGACTCCACAGGT
GGTTATAGAATTAACCACCAGTTCATTCTCAAAATGCTGCTTTGAACTCAGAGGGTTGATACTT
TTAATTTGTAATTTTTTGTAAAACTTTTTACAAGATAGTAAAGTATTTCACCAGAATACCAGTT
TCAATCCGTCCGTGGTCTGATTTTTATATAATTTAGTGGTGCTTTAGAGACTTTGTTTTGTTGT
TTCTGAGCGTAACAGCTCAATCCTCTCTTGCCTGTATCTACCTAAGACCAATGTGAACCTTTGT
ATTTTGCTCCTAATTTTGGACTCAGTGGAAGTGTACTGTTTACATGTACAGATGCCCCATCCCT
GTGTTTTCTGCAAGACGCGCGCTCGAGGAGGAAGATTGCACCTCACTAGCTCATCTGCTTAGCA
AAGCCACAAAACAAAACCTCTCACTTTGTACCCGTTTCCACCTAAAAACAAAAACCTTCACCAC
CTGGAACTCAGATTTGCCAACACACTCTGCCTGGTAGACGCCCCGGGCCTCTATCATGTGTTCC
CTTAGGAATCAAGGCAGCACCTCCTGCCAGCTGGGTGCGAGACAGCACACAGAGGAGACACTGA
TGCAGGACTTTACTGCCCAGCTCTGGGAGGAAGTTCTCTGAGCAGCAGGCAATACGAAGGTCAA
GAGGACTCATGGGCCTTCAGGAGCAAGCCAGGCAGGATTTAGGGACAACACAAGAGGCCATCAA
TCTGCTGGCATGACTGAGACACACTTTGGAAGAACGTGAGTTCCATGTAAGGTGAGACTGTGAC
TTTGAGTGCAGATGACACAAGCACTTCAGGGGAGGGTCAGGGGCTCCAGACAGTAAGCATAAGG
CACTTACCGCAAGCAGTGGATGGCACCAACTTTTCAAGGTGACTTTATTAATCAATGGTTTCAC
CGCTAAATTATATTTTTACAGATATGCACCTATGCAACTTAATGTGGCTCTTCTAAGCAGGTGA
GGACCTCCTCCTCAATGCTCTATATAAAGTGTTTGTGTTCTGTATAGTGAGTTTCCCAGTAAAT
GTGGCTTAATACTTTCATTCTTAGGATGTGTCTTTCTACGTGATGCAGCTACTAAATTCTGTTT
TGTTTGTGGAATGACTAGCACAGGCCGATGCCCTCTTTCCCTCACTTACCAGAAGACCAATGAG
CTGTTAATGAGCGGTTATCTCCATGGTATTACTGCTAAATGCACTGATGTCATAAGTATGTGGA
ATCCTTTTCCTTTTGAGACTGTATATCATATACCAGACTGAATCTACTTAATAAACACTGAACA
ACAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001417417	(Get FASTA)	NCBI Sequence Viewer
	NP_001417418	(Get FASTA)	NCBI Sequence Viewer
	NP_001417419	(Get FASTA)	NCBI Sequence Viewer
	XP_038962599	(Get FASTA)	NCBI Sequence Viewer
	XP_038962600	(Get FASTA)	NCBI Sequence Viewer
	XP_038962601	(Get FASTA)	NCBI Sequence Viewer
	XP_038962602	(Get FASTA)	NCBI Sequence Viewer
	XP_038962603	(Get FASTA)	NCBI Sequence Viewer
	XP_038962604	(Get FASTA)	NCBI Sequence Viewer
	XP_038962605	(Get FASTA)	NCBI Sequence Viewer
	XP_038962606	(Get FASTA)	NCBI Sequence Viewer
	XP_038962607	(Get FASTA)	NCBI Sequence Viewer
	XP_063141155	(Get FASTA)	NCBI Sequence Viewer
	XP_063141156	(Get FASTA)	NCBI Sequence Viewer
	XP_342548	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL86002	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000013881
	ENSRNOP00000013881.6
	ENSRNOP00000103233
	ENSRNOP00000104203
	ENSRNOP00000105437
	ENSRNOP00000106024

RefSeq Acc Id:	XP_342548 ⟸ XM_342547
- Peptide Label:	isoform X8
- UniProtKB:	A6KHV3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNDSTWMSADPHLASSLSPNQEERMRSPQNLHSQEDDDSSSESGSGNGSSTLNPSTSSSTQGDP AFPEMNGNGAAAPMDFTASAEDQPINLCEKLPPGTALGTPSYPSDGCGTDGLRSRVKYGVKSTP ESPPYSSGSYDSIKTEVSGCPEDLTVGRAPAADDDDDDHDDHEDNDKMNDSEGMDPERLKAFNM FVRLFVDENLDRMVPISKQPKEKIQAIIESCSRQFPEFQERARKRIRTYLKSCRRMKKNGMEMT RPTPPHLTSAMAENILAAACESETRKAAKRMRLEIYQSSQEEPIALDKQHPRDSTAITHSTYSL PASAYSQDPVYVNGGLNYSYRGYGSLSSNLQPSASLQTGSHSNGPTDLSMKGGASTPTPPTPTP SSNSTSRTMPTAQLSPTEISAVRQLIAGYRESAAFLLRSADELENLILQQN hide sequence

Ensembl Acc Id:

ENSRNOP00000013881 ⟸ ENSRNOT00000013881

RefSeq Acc Id:	XP_038962600 ⟸ XM_039106672
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038962599 ⟸ XM_039106671
- Peptide Label:	isoform X1
- UniProtKB:	D3ZHS3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038962606 ⟸ XM_039106678
- Peptide Label:	isoform X5
- UniProtKB:	A6KHV3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038962602 ⟸ XM_039106674
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038962601 ⟸ XM_039106673
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038962604 ⟸ XM_039106676
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038962605 ⟸ XM_039106677
- Peptide Label:	isoform X5
- UniProtKB:	A6KHV3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038962603 ⟸ XM_039106675
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038962607 ⟸ XM_039106679
- Peptide Label:	isoform X6
- UniProtKB:	A6KHV3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063141155 ⟸ XM_063285085
- Peptide Label:	isoform X7
- UniProtKB:	A6KHV3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063141156 ⟸ XM_063285086
- Peptide Label:	isoform X9

Ensembl Acc Id:

ENSRNOP00000103233 ⟸ ENSRNOT00000172561

Ensembl Acc Id:

ENSRNOP00000104203 ⟸ ENSRNOT00000142233

Ensembl Acc Id:

ENSRNOP00000106024 ⟸ ENSRNOT00000152449

Ensembl Acc Id:

ENSRNOP00000105437 ⟸ ENSRNOT00000169354

Ensembl Acc Id:

ENSRNOP00000111697 ⟸ ENSRNOT00000173769

Protein Domains

Nucleolar protein 4 helical

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZHS3-F1-model_v2	AlphaFold	D3ZHS3	1-447	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1563510	AgrOrtholog
BioCyc Gene	G2FUF-47218	BioCyc
Ensembl Genes	ENSRNOG00000010417	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000013881	ENTREZGENE
	ENSRNOT00000013881.6	UniProtKB/TrEMBL
	ENSRNOT00000142233	ENTREZGENE
	ENSRNOT00000152449	ENTREZGENE
	ENSRNOT00000169354	ENTREZGENE
	ENSRNOT00000172561	ENTREZGENE
InterPro	HTH_NOL4	UniProtKB/TrEMBL
	NOL4/NOL4L	UniProtKB/TrEMBL
NCBI Gene	362240	ENTREZGENE
PANTHER	PTHR12449	UniProtKB/TrEMBL
	PTHR12449:SF19	UniProtKB/TrEMBL
Pfam	HTH_NOL4_2nd	UniProtKB/TrEMBL
PhenoGen	Nol4l	PhenoGen
RatGTEx	ENSRNOG00000010417	RatGTEx
UniProt	A6KHV3	ENTREZGENE, UniProtKB/TrEMBL
	D3ZHS3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2014-05-14	Nol4l	nucleolar protein 4-like	RGD1563510	similar to RIKEN cDNA 8430427H17 gene	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1563510	similar to RIKEN cDNA 8430427H17 gene	RGD1563510_predicted	similar to RIKEN cDNA 8430427H17 gene (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1563510_predicted	similar to RIKEN cDNA 8430427H17 gene (predicted)	LOC362240	similar to RIKEN cDNA 8430427H17 gene	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC362240	similar to RIKEN cDNA 8430427H17 gene			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar