Rftn1 (raftlin lipid raft linker 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Rftn1 (raftlin lipid raft linker 1) Rattus norvegicus
Analyze
Symbol: Rftn1
Name: raftlin lipid raft linker 1
RGD ID: 1563347
Description: Predicted to enable double-stranded RNA binding activity. Predicted to be involved in several processes, including T cell antigen processing and presentation; antigen receptor-mediated signaling pathway; and positive regulation of growth rate. Predicted to act upstream of or within dsRNA transport; response to exogenous dsRNA; and toll-like receptor 3 signaling pathway. Predicted to be located in endosome; membrane raft; and plasma membrane. Predicted to be part of protein-containing complex. Biomarker of glaucoma. Orthologous to human RFTN1 (raftlin, lipid raft linker 1); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2310015n21rik; LOC501095; raft-linking protein; raftlin; RGD1310777; RGD1563347; similar to RIKEN cDNA 2310015N21
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8918,302,143 - 18,499,819 (+)NCBIGRCr8
mRatBN7.2910,804,611 - 11,002,084 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl910,804,611 - 11,002,084 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx919,306,013 - 19,502,552 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0924,372,610 - 24,569,138 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0922,754,195 - 22,950,721 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0912,740,885 - 12,942,358 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl912,740,885 - 12,942,358 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0911,679,882 - 11,880,237 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.496,008,948 - 6,207,477 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera98,582,887 - 8,778,558 (+)NCBICelera
Cytogenetic Map9q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4,6-tribromophenol  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amphetamine  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP,ISO)
butan-1-ol  (ISO)
C60 fullerene  (EXP)
cantharidin  (ISO)
carbamazepine  (ISO)
CGP 52608  (ISO)
chloroethene  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
DDT  (EXP)
disulfiram  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
Enterolactone  (ISO)
fonofos  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
gentamycin  (EXP)
glyphosate  (ISO)
hydrogen peroxide  (ISO)
hydroquinone  (ISO)
inulin  (ISO)
ivermectin  (ISO)
lead(0)  (ISO)
lipopolysaccharide  (ISO)
methapyrilene  (ISO)
methotrexate  (ISO)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
N,N-diethyl-m-toluamide  (EXP)
O-methyleugenol  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (ISO)
parathion  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
permethrin  (EXP)
phenylmercury acetate  (ISO)
raloxifene  (ISO)
resveratrol  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
terbufos  (ISO)
testosterone  (EXP)
tetrachloromethane  (ISO)
thapsigargin  (ISO)
theophylline  (ISO)
thioacetamide  (EXP)
topotecan  (EXP,ISO)
trichostatin A  (ISO)
troglitazone  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vincristine  (ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Integrated microarray analysis provided novel insights to the pathogenesis of glaucoma. Wang J, etal., Mol Med Rep. 2017 Dec;16(6):8735-8746. doi: 10.3892/mmr.2017.7711. Epub 2017 Oct 4.
Additional References at PubMed
PMID:12477932   PMID:12805216   PMID:19414744   PMID:20458337   PMID:21266579   PMID:21955986  


Genomics

Comparative Map Data
Rftn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8918,302,143 - 18,499,819 (+)NCBIGRCr8
mRatBN7.2910,804,611 - 11,002,084 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl910,804,611 - 11,002,084 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx919,306,013 - 19,502,552 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0924,372,610 - 24,569,138 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0922,754,195 - 22,950,721 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0912,740,885 - 12,942,358 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl912,740,885 - 12,942,358 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0911,679,882 - 11,880,237 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.496,008,948 - 6,207,477 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera98,582,887 - 8,778,558 (+)NCBICelera
Cytogenetic Map9q12NCBI
RFTN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38316,315,845 - 16,513,699 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl316,313,574 - 16,514,026 (-)EnsemblGRCh38hg38GRCh38
GRCh37316,357,352 - 16,555,206 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36316,332,356 - 16,530,226 (-)NCBINCBI36Build 36hg18NCBI36
Celera316,296,470 - 16,494,283 (-)NCBICelera
Cytogenetic Map3p24.3NCBI
HuRef316,290,978 - 16,488,996 (-)NCBIHuRef
CHM1_1316,308,420 - 16,506,893 (-)NCBICHM1_1
T2T-CHM13v2.0316,317,057 - 16,514,836 (-)NCBIT2T-CHM13v2.0
Rftn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391750,300,287 - 50,497,525 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1750,299,285 - 50,497,702 (-)EnsemblGRCm39 Ensembl
GRCm381749,993,258 - 50,190,497 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1749,992,257 - 50,190,674 (-)EnsemblGRCm38mm10GRCm38
MGSCv371750,132,632 - 50,329,822 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361749,458,874 - 49,656,064 (-)NCBIMGSCv36mm8
Celera1753,430,090 - 53,626,629 (-)NCBICelera
Cytogenetic Map17CNCBI
cM Map1725.86NCBI
Rftn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554308,603,401 - 8,779,896 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554308,605,057 - 8,801,187 (-)NCBIChiLan1.0ChiLan1.0
RFTN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2216,301,250 - 16,500,922 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1316,306,013 - 16,505,411 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0316,241,255 - 16,441,402 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1316,578,092 - 16,778,464 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl316,578,092 - 16,778,464 (-)Ensemblpanpan1.1panPan2
RFTN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12326,272,103 - 26,472,610 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2326,282,392 - 26,472,536 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2326,247,350 - 26,447,817 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02326,773,327 - 26,973,915 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2326,773,112 - 26,973,909 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12326,474,319 - 26,674,595 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02326,535,808 - 26,736,282 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02326,784,871 - 26,985,542 (+)NCBIUU_Cfam_GSD_1.0
Rftn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118175,980,661 - 176,179,125 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364739,117,247 - 9,317,704 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364739,119,234 - 9,317,696 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RFTN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl133,454,454 - 3,674,998 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1133,454,448 - 3,675,072 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2133,744,156 - 3,861,922 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RFTN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11561,159,573 - 61,290,342 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1561,159,930 - 61,289,965 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604134,169,257 - 34,371,665 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rftn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248211,562,778 - 1,751,345 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248211,561,845 - 1,763,654 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rftn1
1765 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:102
Count of miRNA genes:76
Interacting mature miRNAs:90
Transcripts:ENSRNOT00000015210
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054141Gmadr4Adrenal mass QTL 42.450.0074adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)9114209783Rat
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9125661317Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat
1578675Bss17Bone structure and strength QTL 173.8femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)9336865213533896Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9510982642921101Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9510982650109826Rat
11353947Bp392Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)9728325252283252Rat
61450Ciaa3CIA Autoantibody QTL 36.5blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)9795472022071169Rat
9589133Insul26Insulin level QTL 2617.960.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)9895256053952560Rat
7411609Foco16Food consumption QTL 1625.60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9895256053952560Rat

Markers in Region
D9Cebr1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2910,873,239 - 10,873,477 (+)MAPPERmRatBN7.2
Rnor_6.0912,808,292 - 12,808,529NCBIRnor6.0
Rnor_5.0911,747,267 - 11,747,504UniSTSRnor5.0
RGSC_v3.496,077,976 - 6,078,213UniSTSRGSC3.4
Celera98,651,536 - 8,651,772UniSTS
Cytogenetic Map9q11UniSTS
RH142923  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2910,962,449 - 10,962,692 (+)MAPPERmRatBN7.2
Rnor_6.0912,902,733 - 12,902,975NCBIRnor6.0
Rnor_5.0911,840,612 - 11,840,854UniSTSRnor5.0
RGSC_v3.496,167,799 - 6,168,041UniSTSRGSC3.4
Celera98,739,517 - 8,739,759UniSTS
RH 3.4 Map914.1UniSTS
Cytogenetic Map9q11UniSTS
AU047623  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2910,928,992 - 10,929,112 (+)MAPPERmRatBN7.2
Rnor_6.0912,869,204 - 12,869,323NCBIRnor6.0
Rnor_5.0911,807,889 - 11,808,008UniSTSRnor5.0
RGSC_v3.496,134,789 - 6,134,908UniSTSRGSC3.4
Celera98,706,473 - 8,706,592UniSTS
Cytogenetic Map9q11UniSTS
AU049072  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2910,928,876 - 10,929,083 (+)MAPPERmRatBN7.2
Rnor_6.0912,869,088 - 12,869,294NCBIRnor6.0
Rnor_5.0911,807,773 - 11,807,979UniSTSRnor5.0
RGSC_v3.496,134,673 - 6,134,879UniSTSRGSC3.4
Celera98,706,357 - 8,706,563UniSTS
Cytogenetic Map9q11UniSTS
D4S1579  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2910,967,582 - 10,968,104 (+)MAPPERmRatBN7.2
Rnor_6.0912,907,866 - 12,908,387NCBIRnor6.0
Rnor_5.0911,845,745 - 11,846,266UniSTSRnor5.0
RGSC_v3.496,172,932 - 6,173,453UniSTSRGSC3.4
Celera98,744,650 - 8,745,171UniSTS
Cytogenetic Map9q11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 17 14 6 19 6 8 11 21 16 26 11 8
Low 1 26 43 35 35 53 19 15
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000015210   ⟹   ENSRNOP00000015210
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl910,804,611 - 11,002,084 (+)Ensembl
Rnor_6.0 Ensembl912,740,885 - 12,942,358 (+)Ensembl
RefSeq Acc Id: NM_001135011   ⟹   NP_001128483
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8918,302,378 - 18,499,819 (+)NCBI
mRatBN7.2910,804,611 - 11,002,084 (+)NCBI
Rnor_6.0912,740,885 - 12,942,358 (+)NCBI
Rnor_5.0911,679,882 - 11,880,237 (+)NCBI
RGSC_v3.496,008,948 - 6,207,477 (+)RGD
Celera98,582,887 - 8,778,558 (+)RGD
Sequence:
RefSeq Acc Id: XM_063267578   ⟹   XP_063123648
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8918,302,143 - 18,499,819 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001128483 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123648 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH98817 (Get FASTA)   NCBI Sequence Viewer  
  EDM18962 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000015210
  ENSRNOP00000015210.5
RefSeq Acc Id: NP_001128483   ⟸   NM_001135011
- UniProtKB: G3V7I2 (UniProtKB/TrEMBL),   A6JIC0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000015210   ⟸   ENSRNOT00000015210
RefSeq Acc Id: XP_063123648   ⟸   XM_063267578
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V7I2-F1-model_v2 AlphaFold G3V7I2 1-554 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696481
Promoter ID:EPDNEW_R7006
Type:multiple initiation site
Name:Rftn1_1
Description:raftlin lipid raft linker 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0912,740,953 - 12,741,013EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1563347 AgrOrtholog
BioCyc Gene G2FUF-28345 BioCyc
Ensembl Genes ENSRNOG00000011321 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000015210 ENTREZGENE
  ENSRNOT00000015210.8 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7377291 IMAGE-MGC_LOAD
InterPro Raftlin UniProtKB/TrEMBL
KEGG Report rno:501095 UniProtKB/TrEMBL
MGC_CLONE MGC:112862 IMAGE-MGC_LOAD
NCBI Gene 501095 ENTREZGENE
PANTHER PTHR17601 UniProtKB/TrEMBL
  RAFTLIN UniProtKB/TrEMBL
Pfam Raftlin UniProtKB/TrEMBL
PhenoGen Rftn1 PhenoGen
RatGTEx ENSRNOG00000011321 RatGTEx
UniProt A6JIC0 ENTREZGENE, UniProtKB/TrEMBL
  G3V7I2 ENTREZGENE, UniProtKB/TrEMBL
  Q4G023_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-07 Rftn1  raftlin lipid raft linker 1  RGD1563347_predicted  similar to RIKEN cDNA 2310015N21 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1563347_predicted  similar to RIKEN cDNA 2310015N21 (predicted)  LOC501095  similar to RIKEN cDNA 2310015N21  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC501095  similar to RIKEN cDNA 2310015N21      Symbol and Name status set to provisional 70820 PROVISIONAL