RGD1563302 (RGD1563302) - Rat Genome Database

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Gene: RGD1563302 (RGD1563302) Rattus norvegicus
Analyze
No known orthologs.
Symbol: RGD1563302
Name: RGD1563302
RGD ID: 1563302
Description: INTERACTS WITH vinclozolin
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical LOC361049; hypothetical protein LOC361049; LOC361049; uncharacterized protein LOC361049
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81537,409,708 - 37,418,463 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1537,409,708 - 37,418,401 (-)EnsemblGRCr8
mRatBN7.21533,294,197 - 33,302,939 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1533,294,198 - 33,302,894 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1535,285,854 - 35,294,495 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01536,436,513 - 36,445,154 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01534,694,302 - 34,702,990 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01539,597,084 - 39,606,027 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1539,597,091 - 39,606,003 (-)Ensemblrn6Rnor6.0
Rnor_5.01543,414,397 - 43,423,341 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41538,265,683 - 38,274,383 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1532,989,222 - 32,997,829 (-)NCBICelera
Cytogenetic Map15p12NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
vinclozolin  (EXP)

References
Additional References at PubMed
PMID:8889548  


Genomics

Variants

.
Variants in RGD1563302
54 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:66
Count of miRNA genes:52
Interacting mature miRNAs:57
Transcripts:ENSRNOT00000059490
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
10755503Bp391Blood pressure QTL 3912.37arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)152024860037896129Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
8552920Pigfal8Plasma insulin-like growth factor 1 level QTL 83blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)15134723002Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
8694361Abfw6Abdominal fat weight QTL 610.20.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)15134723002Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)152788577486257085Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)151985656646187442Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)151985656634924750Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
2 5 5 49 49 48 31 14 31 98 30 39 31 45 17

Sequence


Ensembl Acc Id: ENSRNOT00000059490   ⟹   ENSRNOP00000056247
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1537,409,708 - 37,418,401 (-)Ensembl
mRatBN7.2 Ensembl1533,294,198 - 33,302,894 (-)Ensembl
Rnor_6.0 Ensembl1539,597,091 - 39,606,003 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000098422   ⟹   ENSRNOP00000097695
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1533,294,198 - 33,302,894 (-)Ensembl
RefSeq Acc Id: NM_001162899   ⟹   NP_001156371
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81537,409,708 - 37,418,401 (-)NCBI
mRatBN7.21533,294,201 - 33,302,894 (-)NCBI
Rnor_6.01539,597,084 - 39,606,003 (-)NCBI
Rnor_5.01543,414,397 - 43,423,341 (-)NCBI
RGSC_v3.41538,265,683 - 38,274,383 (-)RGD
Celera1532,989,222 - 32,997,829 (-)RGD
Sequence:
RefSeq Acc Id: XM_006252122   ⟹   XP_006252184
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81537,409,708 - 37,418,463 (-)NCBI
mRatBN7.21533,294,197 - 33,302,939 (-)NCBI
Rnor_6.01539,597,084 - 39,606,027 (-)NCBI
Rnor_5.01543,414,397 - 43,423,341 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001156371 (Get FASTA)   NCBI Sequence Viewer  
  XP_006252184 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM14375 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000056247
  ENSRNOP00000056247.3
  ENSRNOP00000097695.1
RefSeq Acc Id: NP_001156371   ⟸   NM_001162899
- UniProtKB: A0A8I6ATG3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006252184   ⟸   XM_006252122
- Peptide Label: isoform X1
- UniProtKB: D3ZX89 (UniProtKB/TrEMBL),   A0A8I6ATG3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000056247   ⟸   ENSRNOT00000059490
Ensembl Acc Id: ENSRNOP00000097695   ⟸   ENSRNOT00000098422

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZX89-F1-model_v2 AlphaFold D3ZX89 1-160 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699731
Promoter ID:EPDNEW_R10254
Type:initiation region
Name:RGD1563302_1
Description:RGD1563302
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01539,606,027 - 39,606,087EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1563302 AgrOrtholog
BioCyc Gene G2FUF-13567 BioCyc
Ensembl Genes ENSRNOG00000038917 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000059490 ENTREZGENE
  ENSRNOT00000059490.3 UniProtKB/TrEMBL
  ENSRNOT00000098422.1 UniProtKB/TrEMBL
NCBI Gene 361049 ENTREZGENE
PhenoGen RGD1563302 PhenoGen
RatGTEx ENSRNOG00000038917 RatGTEx
UniProt A0A8I6ATG3 ENTREZGENE, UniProtKB/TrEMBL
  D3ZX89 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 RGD1563302  RGD1563302   RGD1563302_predicted  RGD1563302 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1563302_predicted  RGD1563302 (predicted)  LOC361049  hypothetical LOC361049  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC361049  hypothetical LOC361049      Symbol and Name status set to provisional 70820 PROVISIONAL