Zfhx4 (zinc finger homeobox 4) - Rat Genome Database

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Gene: Zfhx4 (zinc finger homeobox 4) Rattus norvegicus
Analyze
Symbol: Zfhx4
Name: zinc finger homeobox 4
RGD ID: 1563022
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZFHX4 (zinc finger homeobox 4); INTERACTS WITH 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC310250; RGD1563022; similar to zinc-finger homeodomain protein 4; zinc finger homeobox protein 4; zinc finger homeodomain 4
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8298,131,996 - 98,321,070 (-)NCBIGRCr8
GRCr8 Ensembl298,131,996 - 98,315,469 (-)EnsemblGRCr8 Ensembl
mRatBN7.2296,224,763 - 96,408,245 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl296,224,767 - 96,408,228 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2102,769,126 - 102,952,321 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02100,890,220 - 101,073,413 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0295,941,374 - 96,124,613 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0298,423,565 - 98,610,368 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl298,423,569 - 98,610,368 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02118,157,856 - 118,345,227 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4298,549,509 - 98,734,901 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera291,739,962 - 91,923,160 (-)NCBICelera
Cytogenetic Map2q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (ISO)
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4,4'-trichlorobiphenyl  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
casticin  (ISO)
CGP 52608  (ISO)
chloroprene  (EXP)
cisplatin  (ISO)
clobetasol  (ISO)
crotonaldehyde  (ISO)
Cuprizon  (EXP)
cytarabine  (ISO)
dexamethasone  (ISO)
dichloromethane  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
epoxiconazole  (ISO)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
geldanamycin  (ISO)
indole-3-methanol  (EXP)
indometacin  (ISO)
ketamine  (EXP)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
melphalan  (ISO)
mercury atom  (ISO)
mercury(0)  (ISO)
methotrexate  (ISO)
methylmercury chloride  (ISO)
N-acetyl-L-cysteine  (EXP)
N-nitrosodiethylamine  (EXP)
nickel atom  (ISO)
nickel sulfate  (ISO)
oxaliplatin  (EXP)
paracetamol  (EXP)
PCB138  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
potassium chromate  (ISO)
propiconazole  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
succimer  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
tetrachloromethane  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA,IEA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:24440720  


Genomics

Comparative Map Data
Zfhx4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8298,131,996 - 98,321,070 (-)NCBIGRCr8
GRCr8 Ensembl298,131,996 - 98,315,469 (-)EnsemblGRCr8 Ensembl
mRatBN7.2296,224,763 - 96,408,245 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl296,224,767 - 96,408,228 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2102,769,126 - 102,952,321 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02100,890,220 - 101,073,413 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0295,941,374 - 96,124,613 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0298,423,565 - 98,610,368 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl298,423,569 - 98,610,368 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02118,157,856 - 118,345,227 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4298,549,509 - 98,734,901 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera291,739,962 - 91,923,160 (-)NCBICelera
Cytogenetic Map2q23NCBI
ZFHX4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38876,681,247 - 76,867,281 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl876,681,239 - 76,867,281 (+)EnsemblGRCh38hg38GRCh38
GRCh37877,593,482 - 77,779,517 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36877,756,070 - 77,942,076 (+)NCBINCBI36Build 36hg18NCBI36
Build 34877,778,834 - 77,940,711NCBI
Celera873,586,882 - 73,772,899 (+)NCBICelera
Cytogenetic Map8q21.13NCBI
HuRef873,079,827 - 73,265,620 (+)NCBIHuRef
CHM1_1877,645,108 - 77,831,116 (+)NCBICHM1_1
T2T-CHM13v2.0877,110,392 - 77,296,418 (+)NCBIT2T-CHM13v2.0
Zfhx4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3935,276,268 - 5,480,921 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl35,283,586 - 5,480,917 (+)EnsemblGRCm39 Ensembl
GRCm3835,218,218 - 5,415,861 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl35,218,526 - 5,415,857 (+)EnsemblGRCm38mm10GRCm38
MGSCv3735,218,554 - 5,415,855 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3635,224,745 - 5,397,584 (+)NCBIMGSCv36mm8
Celera35,302,820 - 5,500,317 (+)NCBICelera
Cytogenetic Map3A1NCBI
cM Map31.96NCBI
Zfhx4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554443,938,830 - 4,116,076 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554443,938,830 - 4,116,076 (-)NCBIChiLan1.0ChiLan1.0
ZFHX4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2792,415,091 - 92,601,929 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1868,043,186 - 68,229,782 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0873,206,659 - 73,392,531 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1874,844,366 - 75,030,190 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl874,844,374 - 75,030,190 (+)Ensemblpanpan1.1panPan2
ZFHX4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12924,689,152 - 24,849,048 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2924,667,180 - 24,846,270 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2924,929,902 - 25,111,936 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02924,779,377 - 24,961,780 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2924,781,333 - 24,959,003 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12924,878,361 - 25,037,052 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02924,895,008 - 25,053,849 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02925,247,073 - 25,406,115 (+)NCBIUU_Cfam_GSD_1.0
Zfhx4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530354,302,796 - 54,487,818 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049367021,694,685 - 1,872,942 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZFHX4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl459,387,007 - 59,575,073 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1459,384,202 - 59,580,913 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2464,861,519 - 65,053,217 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZFHX4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1872,206,263 - 72,396,852 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl872,208,282 - 72,396,818 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603968,883,502 - 69,071,916 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zfhx4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474414,400,990 - 14,597,276 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474414,401,079 - 14,597,220 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zfhx4
2214 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:528
Count of miRNA genes:257
Interacting mature miRNAs:327
Transcripts:ENSRNOT00000011641
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578777Stresp15Stress response QTL 1520.05blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)261556902106556902Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
1598865Bp296Blood pressure QTL 2962.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)282947902127947902Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)267845370229470703Rat
1578772Stresp14Stress response QTL 1450.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)284056790132859658Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)283465462229820014Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)220695736231474293Rat
1581576Pur7Proteinuria QTL 70.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)280396178220931218Rat
152025242Bw191Body weight QTL 1913.62body mass (VT:0001259)240306867124537199Rat
631198Cm22Cardiac mass QTL 224.30.0008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)278269809208420281Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)227148328145807373Rat
61465Bp13Blood pressure QTL 133.3blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)278269809104744824Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)280396178220931218Rat
2317886Alcrsp23Alcohol response QTL 232.40.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)295142371140142371Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)241801363104744824Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
2317058Aia13Adjuvant induced arthritis QTL 132.9joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)278269809123269809Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24265106205135428Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
1300155Bp174Blood pressure QTL 1744.09arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)244537979112567334Rat
5684990Bmd82Bone mineral density QTL 822.8tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)261051541105724065Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)27605533104774005Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)267845182205135428Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)283400752223709938Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)228652666139067443Rat
2299162Iddm32Insulin dependent diabetes mellitus QTL 322.36blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)293602631145807373Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)280396034220931416Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)278269809205135428Rat
631500Bp99Blood pressure QTL 992.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)261051883104684275Rat
61392Bp6Blood pressure QTL 67arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)282214549127214549Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
5684996Bmd85Bone mineral density QTL 854.70.024tibia mineral mass (VT:1000283)bone mineral density (CMO:0001226)261051541105724065Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)244537979159440891Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)283465462225110681Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)247856345205135428Rat
1558648Smcn1Smooth muscle cell number QTL 10.039blood vessel smooth muscle cell quantity (VT:0010525)aorta smooth muscle cell count per unit vessel length (CMO:0001646)260861391105861391Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)244537979184731399Rat
2306903Bp336Blood pressure QTL 3360.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)238426449111295694Rat
152025206Hrtrt23Heart rate QTL 235.98heart pumping trait (VT:2000009)230219200171802126Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)276328396209350714Rat
152025204Hrtrt22Heart rate QTL 225.6heart pumping trait (VT:2000009)230219200171802126Rat
61438Cia7Collagen induced arthritis QTL 74.60.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)261051541143746880Rat

Markers in Region
D2Rat122  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8298,252,718 - 98,252,855 (+)Marker Load Pipeline
mRatBN7.2296,345,489 - 96,345,626 (+)MAPPERmRatBN7.2
Rnor_6.0298,545,920 - 98,546,056NCBIRnor6.0
Rnor_5.02118,280,211 - 118,280,347UniSTSRnor5.0
RGSC_v3.4298,671,712 - 98,671,848UniSTSRGSC3.4
RGSC_v3.4298,671,711 - 98,671,848RGDRGSC3.4
Celera291,860,460 - 91,860,596UniSTS
RGSC_v3.1298,616,673 - 98,616,810RGD
SHRSP x BN Map236.5198RGD
SHRSP x BN Map236.5198UniSTS
Cytogenetic Map2q24UniSTS
D2Got53  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2296,319,306 - 96,319,473 (+)MAPPERmRatBN7.2
Rnor_6.0298,518,886 - 98,519,052NCBIRnor6.0
Rnor_5.02118,253,177 - 118,253,343UniSTSRnor5.0
RGSC_v3.4298,644,661 - 98,644,827UniSTSRGSC3.4
RGSC_v3.4298,644,660 - 98,644,827RGDRGSC3.4
Celera291,834,441 - 91,834,607UniSTS
RGSC_v3.1298,589,623 - 98,589,789RGD
RH 3.4 Map2680.1UniSTS
RH 3.4 Map2680.1RGD
RH 2.0 Map2633.7RGD
Cytogenetic Map2q24UniSTS
D2Got416  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2296,278,942 - 96,279,160 (+)MAPPERmRatBN7.2
Rnor_6.0298,478,239 - 98,478,456NCBIRnor6.0
Rnor_5.02118,212,530 - 118,212,747UniSTSRnor5.0
RGSC_v3.4298,603,687 - 98,603,904UniSTSRGSC3.4
Celera291,794,102 - 91,794,319UniSTS
Cytogenetic Map2q24UniSTS
RH45950  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2296,227,580 - 96,227,734 (+)MAPPERmRatBN7.2
Rnor_6.0298,426,383 - 98,426,536NCBIRnor6.0
Rnor_5.02118,160,674 - 118,160,827UniSTSRnor5.0
RGSC_v3.4298,552,323 - 98,552,476UniSTSRGSC3.4
Cytogenetic Map2q24UniSTS
C130041O22Rik  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2296,227,469 - 96,227,860 (+)MAPPERmRatBN7.2
Rnor_6.0298,426,272 - 98,426,662NCBIRnor6.0
Rnor_5.02118,160,563 - 118,160,953UniSTSRnor5.0
RGSC_v3.4298,552,212 - 98,552,602UniSTSRGSC3.4
Cytogenetic Map2q24UniSTS
AI007855  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2296,228,211 - 96,228,382 (+)MAPPERmRatBN7.2
Rnor_6.0298,427,014 - 98,427,184NCBIRnor6.0
Rnor_5.02118,161,305 - 118,161,475UniSTSRnor5.0
RGSC_v3.4298,552,954 - 98,553,124UniSTSRGSC3.4
Celera291,743,376 - 91,743,546UniSTS
RH 3.4 Map2678.3UniSTS
Cytogenetic Map2q24UniSTS
ZFH4__4938  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2296,227,379 - 96,228,152 (+)MAPPERmRatBN7.2
Rnor_6.0298,426,182 - 98,426,954NCBIRnor6.0
Rnor_5.02118,160,473 - 118,161,245UniSTSRnor5.0
RGSC_v3.4298,552,122 - 98,552,894UniSTSRGSC3.4
Celera291,742,575 - 91,743,316UniSTS
Cytogenetic Map2q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
9 11 42 113 91 90 59 23 59 6 198 88 11 93 34 57 31 16 16

Sequence


Ensembl Acc Id: ENSRNOT00000011641   ⟹   ENSRNOP00000011641
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl298,131,996 - 98,315,469 (-)Ensembl
mRatBN7.2 Ensembl296,224,767 - 96,408,228 (-)Ensembl
Rnor_6.0 Ensembl298,423,569 - 98,610,368 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000148397   ⟹   ENSRNOP00000100150
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl298,131,996 - 98,312,754 (-)Ensembl
RefSeq Acc Id: NM_001191702   ⟹   NP_001178631
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8298,131,996 - 98,315,469 (-)NCBI
mRatBN7.2296,224,767 - 96,408,245 (-)NCBI
Rnor_6.0298,423,569 - 98,610,368 (-)NCBI
Rnor_5.02118,157,856 - 118,345,227 (-)NCBI
Celera291,739,962 - 91,923,160 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006232162   ⟹   XP_006232224
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8298,131,996 - 98,315,230 (-)NCBI
mRatBN7.2296,227,491 - 96,407,998 (-)NCBI
Rnor_6.0298,423,565 - 98,610,068 (-)NCBI
Rnor_5.02118,157,856 - 118,345,227 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006232164   ⟹   XP_006232226
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8298,131,996 - 98,314,203 (-)NCBI
mRatBN7.2296,227,491 - 96,406,036 (-)NCBI
Rnor_6.0298,423,565 - 98,606,528 (-)NCBI
Rnor_5.02118,157,856 - 118,345,227 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063281757   ⟹   XP_063137827
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8298,131,996 - 98,321,070 (-)NCBI
RefSeq Acc Id: XM_063281758   ⟹   XP_063137828
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8298,131,996 - 98,314,203 (-)NCBI
RefSeq Acc Id: XM_063281759   ⟹   XP_063137829
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8298,131,996 - 98,321,070 (-)NCBI
RefSeq Acc Id: NP_001178631   ⟸   NM_001191702
- UniProtKB: D4A3U5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006232224   ⟸   XM_006232162
- Peptide Label: isoform X1
- UniProtKB: D4A3U5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006232226   ⟸   XM_006232164
- Peptide Label: isoform X1
- UniProtKB: D4A3U5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000011641   ⟸   ENSRNOT00000011641
RefSeq Acc Id: XP_063137829   ⟸   XM_063281759
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063137827   ⟸   XM_063281757
- Peptide Label: isoform X1
- UniProtKB: D4A3U5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137828   ⟸   XM_063281758
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000100150   ⟸   ENSRNOT00000148397
Protein Domains
C2H2-type   Homeobox

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1563022 AgrOrtholog
BioCyc Gene G2FUF-53666 BioCyc
Ensembl Genes ENSRNOG00000008765 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000011641 ENTREZGENE
  ENSRNOT00000011641.6 UniProtKB/TrEMBL
  ENSRNOT00000148397 ENTREZGENE
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
InterPro Homeobox UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_U1 UniProtKB/TrEMBL
  ZnFinger_Homeobox_TR UniProtKB/TrEMBL
NCBI Gene 310250 ENTREZGENE
PANTHER ZINC FINGER HOMEOBOX PROTEIN UniProtKB/TrEMBL
  ZINC FINGER HOMEOBOX PROTEIN 4 UniProtKB/TrEMBL
Pfam Homeobox UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
  zf-C2H2_ZFHX3 UniProtKB/TrEMBL
PhenoGen Zfhx4 PhenoGen
PROSITE HOMEOBOX_1 UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000008765 RatGTEx
SMART HOX UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
  ZnF_U1 UniProtKB/TrEMBL
Superfamily-SCOP Homeodomain_like UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt D4A3U5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-11-17 Zfhx4  zinc finger homeobox 4  Zfhx4  zinc finger homeodomain 4   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Zfhx4  zinc finger homeodomain 4   Zfhx4_predicted  zinc finger homeodomain 4 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Zfhx4_predicted  zinc finger homeodomain 4 (predicted)  RGD1563022_predicted  similar to zinc-finger homeodomain protein 4 (predicted)  Symbol and Name updated 1299863 APPROVED
2006-03-07 RGD1563022_predicted  similar to zinc-finger homeodomain protein 4 (predicted)  LOC310250  similar to zinc-finger homeodomain protein 4  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC310250  similar to zinc-finger homeodomain protein 4      Symbol and Name status set to provisional 70820 PROVISIONAL