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Gene: Sel1l3 (SEL1L family member 3) Rattus norvegicus

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Symbol:

Sel1l3

Name:

SEL1L family member 3

RGD ID:

1562860

Description:

Predicted to be located in membrane. Orthologous to human SEL1L3 (SEL1L family member 3); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC360945; protein sel-1 homolog 3; RGD1310366; RGD1562860; sel-1 suppressor of lin-12-like 3; sel-1 suppressor of lin-12-like 3 (C. elegans); similar to RIKEN cDNA 2310045A20

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SEL1L3 (SEL1L family member 3)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Sel1l3 (sel-1 suppressor of lin-12-like 3 (C. elegans))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Sel1l3 (SEL1L family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SEL1L3 (SEL1L family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SEL1L3 (SEL1L family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Sel1l3 (SEL1L family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SEL1L3 (SEL1L family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SEL1L3 (SEL1L family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Sel1l3 (SEL1L family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	CR2 (complement C3d receptor 2)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Sel1l3 (sel-1 suppressor of lin-12-like 3 (C. elegans))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	SEL1L3 (SEL1L family member 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	LOC559843 (protein sel-1 homolog 3)	Alliance	DIOPT (InParanoid\|OrthoInspector\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	sel1l3	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	61,988,350 - 62,095,542 (+)	NCBI		GRCr8
mRatBN7.2	14	57,775,515 - 57,882,076 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	57,775,501 - 57,882,644 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	14	60,122,968 - 60,229,565 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	60,123,169 - 60,229,734 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	60,243,580 - 60,349,278 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	62,523,392 - 62,630,921 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	14	56,877,357 - 56,982,759 (+)	NCBI		Celera
Cytogenetic Map	14	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,3-benzothiazole-2-thiol (ISO)

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

3-phenylprop-2-enal (ISO)

4-\{[(5,5,8,8-tetramethyl-5,6,7,8-tetrahydronaphthalen-2-yl)carbonyl]amino\}benzoic acid (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

7beta-aminocephalosporanic acid (ISO)

acrolein (ISO)

aflatoxin B1 (EXP,ISO)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (EXP)

ammonium hexachloroplatinate (ISO)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

atrazine (EXP)

azathioprine (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

chloropicrin (ISO)

cisplatin (ISO)

clobetasol (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) chloride (ISO)

cyclosporin A (ISO)

DDE (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

dibutyl phthalate (ISO)

disulfiram (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP,ISO)

entinostat (ISO)

epichlorohydrin (ISO)

epoxiconazole (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

fenvalerate (EXP)

fipronil (EXP)

gold atom (ISO)

gold(0) (ISO)

hexamethylene diisocyanate (ISO)

inulin (ISO)

lead diacetate (ISO)

methidathion (ISO)

methimazole (EXP)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

mono(2-ethylhexyl) phthalate (ISO)

N-nitrosodiethylamine (ISO)

nickel atom (ISO)

nickel sulfate (ISO)

ozone (ISO)

paracetamol (EXP)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (EXP)

phenobarbital (EXP)

pirinixic acid (ISO)

potassium chromate (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

progesterone (ISO)

rotenone (EXP,ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

sulforaphane (ISO)

sunitinib (ISO)

temozolomide (ISO)

tert-butyl hydroperoxide (ISO)

testosterone enanthate (ISO)

thapsigargin (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (EXP,ISO)

triphenyl phosphate (ISO)

tunicamycin (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

membrane (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	GOA pipeline	RGD automated data pipeline
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Sel1l3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	61,988,350 - 62,095,542 (+)	NCBI		GRCr8
mRatBN7.2	14	57,775,515 - 57,882,076 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	57,775,501 - 57,882,644 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	14	60,122,968 - 60,229,565 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	60,123,169 - 60,229,734 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	60,243,580 - 60,349,278 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	62,523,392 - 62,630,921 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	14	56,877,357 - 56,982,759 (+)	NCBI		Celera
Cytogenetic Map	14	q11	NCBI

SEL1L3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	25,713,964 - 25,863,566 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	25,747,433 - 25,863,760 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	25,749,055 - 25,865,188 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	25,358,147 - 25,473,708 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	4	26,197,112 - 26,312,612 (-)	NCBI		Celera
Cytogenetic Map	4	p15.2	NCBI
HuRef	4	25,087,445 - 25,187,996 (-)	NCBI		HuRef
CHM1_1	4	25,748,848 - 25,864,383 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	4	25,696,040 - 25,845,644 (-)	NCBI		T2T-CHM13v2.0

Sel1l3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	53,264,425 - 53,370,794 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	53,264,425 - 53,371,269 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	53,107,083 - 53,213,452 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	53,107,083 - 53,213,927 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	53,498,322 - 53,604,691 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	53,395,405 - 53,501,567 (-)	NCBI		MGSCv36	mm8
Celera	5	50,487,614 - 50,594,186 (-)	NCBI		Celera
Cytogenetic Map	5	C1	NCBI
cM Map	5	28.96	NCBI

Sel1l3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955443	19,317,461 - 19,407,323 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955443	19,317,461 - 19,406,721 (+)	NCBI	ChiLan1.0	ChiLan1.0

SEL1L3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	25,994,442 - 26,111,700 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	26,190,146 - 26,307,229 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	20,146,350 - 20,261,694 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	25,425,402 - 25,540,925 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	25,425,402 - 25,540,925 (-)	Ensembl	panpan1.1		panPan2

SEL1L3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	84,546,410 - 84,647,358 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	84,546,536 - 84,646,417 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	87,057,626 - 87,158,335 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	85,515,750 - 85,616,048 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	3	85,515,744 - 85,616,023 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	3	84,637,388 - 84,737,872 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	84,758,474 - 84,858,073 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	85,141,880 - 85,241,799 (+)	NCBI		UU_Cfam_GSD_1.0

Sel1l3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	50,098,169 - 50,195,911 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936477	3,812,957 - 3,898,580 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936477	3,813,080 - 3,898,289 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SEL1L3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	19,534,459 - 19,649,695 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	19,534,451 - 19,649,784 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	19,873,163 - 19,972,370 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SEL1L3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	27	24,479,594 - 24,602,350 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	27	24,480,425 - 24,602,563 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666047	70,995,812 - 71,113,803 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sel1l3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624755	6,686,462 - 6,788,478 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624755	6,686,526 - 6,788,361 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Sel1l3
511 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	46
Count of miRNA genes:	42
Interacting mature miRNAs:	45
Transcripts:	ENSRNOT00000006610
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2313089	Bss81	Bone structure and strength QTL 81	3.4	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	14	37669719	82669719	Rat
1581500	Renag1	Renal agenesis QTL 1			kidney development trait (VT:0000527)	percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)	14	8170668	68298175	Rat
9590294	Uminl4	Urine mineral level QTL 4	5.66	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	14	55624247	100624247	Rat
2300197	Scl59	Serum cholesterol level QTL 59			blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	14	55147478	100147478	Rat
70214	Niddm28	Non-insulin dependent diabetes mellitus QTL 28	4.06		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	39998251	75582726	Rat
10755459	Coatc15	Coat color QTL 15		0.01681	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	14	19836944	64836944	Rat
1300154	Bp189	Blood pressure QTL 189	3.04		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	14	30883777	68757901	Rat
70187	Pancm5	Pancreatic morphology QTL 5	16.7		pancreas mass (VT:0010144)	pancreas weight to body weight ratio (CMO:0000630)	14	30320092	80829842	Rat
631523	Pia13	Pristane induced arthritis QTL 13	3.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	40793460	98037301	Rat
2313100	Bss82	Bone structure and strength QTL 82	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	14	37669719	82669719	Rat
7387267	Uae42	Urinary albumin excretion QTL 42		0.61	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	14	22167967	67167967	Rat
2317879	Alcrsp27	Alcohol response QTL 27	3.3	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	14	56631369	101631369	Rat
631839	Niddm37	Non-insulin dependent diabetes mellitus QTL 37	3.37		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	11030622	95876975	Rat
2313397	Coatc1	Coat color QTL1			coat/hair pigmentation trait (VT:0010463)	coat/hair color measurement (CMO:0001808)	14	18541332	63541332	Rat
9589034	Epfw11	Epididymal fat weight QTL 11	6	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	14	55624247	100624247	Rat
1300136	Rf22	Renal function QTL 22	3.9		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	14	42262529	95023211	Rat
2313048	Bss84	Bone structure and strength QTL 84	3.1	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	14	37669719	82669719	Rat
1549834	Scl45	Serum cholesterol level QTL 45	5.8		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	14	50023211	95023211	Rat
738037	Hcas6	Hepatocarcinoma susceptibility QTL 6	2.93		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	14	39057237	83368335	Rat
2313084	Bss83	Bone structure and strength QTL 83	2.9	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	14	37669719	82669719	Rat

Markers in Region

BF400256

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	57,788,586 - 57,788,768 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	60,136,017 - 60,136,198	NCBI	Rnor6.0
Rnor_5.0	14	60,256,600 - 60,256,781	UniSTS	Rnor5.0
RGSC_v3.4	14	62,536,709 - 62,536,890	UniSTS	RGSC3.4
Celera	14	56,890,348 - 56,890,529	UniSTS
RH 3.4 Map	14	453.97	UniSTS
Cytogenetic Map	14	q11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	47	113	83	82	51	25	51	6	208	95	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001427327	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604863	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473963	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000006610 ⟹ ENSRNOP00000006610

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	57,775,501 - 57,882,644 (+)	Ensembl
Rnor_6.0 Ensembl	14	60,123,169 - 60,229,734 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113070 ⟹ ENSRNOP00000077676

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	57,776,353 - 57,882,644 (+)	Ensembl

RefSeq Acc Id:

NM_001427327 ⟹ NP_001414256

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	61,988,350 - 62,095,542 (+)	NCBI

RefSeq Acc Id:

XM_006251033 ⟹ XP_006251095

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	61,990,845 - 62,095,542 (+)	NCBI
mRatBN7.2	14	57,777,698 - 57,882,076 (+)	NCBI
Rnor_6.0	14	60,127,896 - 60,229,565 (+)	NCBI
Rnor_5.0	14	60,243,580 - 60,349,278 (+)	NCBI

Sequence:

show sequence

AGCCAATGCAATTGCTTTTTTGACCGTGGAAAGTTTGATCCAGCCAGTTTGGAGAGAGAGTGCT
CTGGAGCCAAAGTCTTAGGTGATGGATGGAGTGGCCAGCAGGAGAAAAACAGCCGTGGTTATTG
TTTGCGTATCTGACCTGCTCCCACACACTGAATTTTGTGCCATCTTTGGGCAGGCAGACTTCCC
TGACGACATCGGTGCTGCCCAGAACAGAACAGAGCACAACGTACACAGACTTTATTTATTTTAC
TGCCTTTGAAGGGAGCGTGCGCAATGTCTCTGAAGTCTCTGTGGAGTATTTATGCTCCCAGCCT
TGTGTTGTCAATTTGGAAGCGGTTGTGTCATCCGAGTTCAGAAGTAGCATTCCCGTGTACAAAA
AGAGGTGGAGGAATGAGAAGCATCTTCACACCAGCAGGACACAGATAGTACACGTGAAGTTTCC
GAGCATTATGGTGTACAGGGATGACTACCTGATCAGACACCCCATCTCGGTGTCCCCAGTGATT
CTCCGAGCCTGGATCACTCACTGGCACAGTGGCGGGGGCTTGAACGTGCGAGGGGAGGAGAATT
TGCTGCACGCAGTAGCCAAGAATTACACCCTGCTGCAGACGGTCCCGCCTTTCGAACGGCCTTT
CAAAGATCATCAGGTGTGCCTGGAGTGGAACATGGACTATCTCTGGAGTCTCTGGGCCAATAGG
ATCCCACAGTGTCCTCTGGAAAGTGATGCAGTTCCCCTCCTCAGCTTTCCCTATGCTTCCAGTG
GAGAAAACACAGGCATCGTAAAGAAGCTCCCAAAGTTCCAGAACCGAGAACTAGAGGCCACCCG
AAGCCAGCGCGTGGACTACCCCATGGTCACCATTTCACTGTGGCTTTATTTACTCCATTATTGC
GAGGCCAGCCTCTGTGGAATTCTGTACTTTGTTGATTCTAATGAGATGTACGGCACGCCTTCTG
TTTTTCTTACGGAAGACGGCAGTTTGCATATTCAAATGCATCTCATCAAAGGAGAAGACCTGGC
TGTAAAAACAAAATTCACCCTCCCTTTGAAGGAGTGGTGCCGACTGGACATCTCTTTCAATGGA
GGCCAGATAGTGGTCACTGCCAGCATTGGATGGGACTTGAAAAGCTACCATAATCAGACCATTA
GCTTCCATGAAGATTTCTATTACAATGACACAGCTGGATACTTCGTTGTTGGAGGGAGCAGGTA
TGTGGCAGGCATCGAAGGGTTTTTTGGACCAGTGAAATACTATCGCCTCCGCAGCCTACACCCC
GCACAGGTTCTTAATCCCTTCCTTGAGAAGGAACTGGCTGAACAAATCAAGTTATATTATGAGC
ATTGCGCCGAGGTCTGGGACATAATATCCTCGTATACTGCAACAGTCCAGGCTGGGGGTGAGAG
GCGAGAGACATGTGACTTCCGTAACTCCTACCTGGACCTCAAGCGCAAGTATGGGAGAGCCGAG
GTGTGCAGAGCCTTACCCTGGGAGAAGGGGCTGAGAGACAGGCACCCCAGCTTGTTCCAGACTC
TGCTGCAGATGGACCTGCTGACCGCGCCACGGAACCAAAATGACTCCGTATTAGAAATCGGTGC
GAGGATATTTGAGAAGGCTGTAAAGAGACTCTCTGGCGTTGATGGCCTTCACCAAATTAGCTCT
GCCGTCCCCCTTCTGATGTATTCCAGCTGCTGTGGATACCATAAAGCATCCTACTACCTCACCG
TCTTCTATGAAACTGGGTTAAATGGACCTCGGGATCAGCTGCAGGGCATGCTATACAGTCTGGT
TGGAGGCCAAGGCAGTGAGAGGCTGTCATCAATGAATCTCGGGTACAAGCACTACCAGGGTGTT
GACAGCTACCCCCTGGACTGGGAACTGTCATATGCCTACTACAGCAACATTGCTACAAAGACAC
CCCTTGACCAGCACACACTGCAGGGAGACCAGGCGTATGTTGAAACTATTAGACTCAAAGATGA
TGAAATACTCAAGGTCCAAACCAAAGAAGACGGAGATGTCTTTATGTGGCTGAAGCACGAAGCC
ACCCGCGGCAACGCGGCAGCACAGCAACGATTGGCTCAGATGCTCTTCTGGGGACAGCAAGGGG
TGGCCAAGAACCCTGAGGCTGCTATCGAGTGGTACGCTAAGGGGGCCCTGGAGACTGAGGATCC
GGCGCTGATATACGACTATGCCATTGTGTTATTCAAGGGTCAAGGAGTTAAAAAGAACAGACGG
CTTGCCTTAGAGCTCATGAAGAAAGCTGCTTCCAAGGGATTGCATCAGGCTGTCAATGGCCTGG
GATGGTATTACCACAAATTCAGGAAAAATTATGCCAAAGCAGCAAAGTACTGGTTAAAAGCTGA
AGAAATGGGAAACCCAGATGCATCTTACAATCTTGGGGTCCTATATTTGGACGGCATTTTCCCA
GGACTTCCTGGGAGGAATCTGACACTAGCTGGCGAATACTTCCATAAAGCTGCACAAGGTGGGC
ACATCGAAGGGACATTGTGGTGTTCTCTTTACTATATCACCGGAAACCTGGAGACCTTCCCTAG
AGATCCGGAGAAAGCTGTTGTATGGGCAAAACATGTGGCTGAGAAAAACGGATACTTGGGACAT
GTCATTCGCAAAGGCCTCAATGCCTACCTGGAGGGTCTGTGGCACGAGGCTTTGCTGTATTATG
TTTTAGCAGCAGAAACTGGAATTGAAGTGTCACAGACAAATTTAGCACACATCTGCGAGGAGCG
GCCAGACCTGGCTGGGAGATACTTGGGCGTTAATTGTGTTTGGCGATACTATAATTTCTCTGTT
TTTCAAATCGATGCTCCTTCATTTGCATATTTGAAAATGGGAGACCTTTACTACTATGGCCACC
AAAACCAGTCCCAAGATCTGGAGCTGTCTGTGCAGATGTACGCCCAAGCAGCCCTGGATGGAGA
CTCCCAGGGATTTTTCAACCTTGCTGCACTGATAGAGGAAGGTGCTGTCATCCCACACCACATT
CTGGAGTTCTTGGAAATCGACCCATCACTCCATCCCAGTAACACCTCCATACTCCGGGAGCTGT
ACGAAAGGTGCTGGAGTCTCGGTAACGAGGAATCCCTGAGCCCCTGCTCCCTGGCTTTGCTCTA
CCTTCACCTGCGGCTTCTCTGCGGTGCCCTTATGCACTCCACCCTGATCTACTTCCTGGGGACC
TTCCTGCTGTCTGTGGTGATCGCCTGGATGGTGCTTTATCTCCAGTGTGTCTCAGCCAGTGGCT
CCTCTCCAGCACCAGCCTGGGTCTTGGCAGACCCCGCCTCATCCACCCCAAGTCCAGCTGTGCC
TCCAGCTGCAGATGCCTCCGACCACGACCCACCTATGATGGCTAACAACCCCGAGCCTCGTGGG
TGAACTGTGCACCTCTGACCTCTCCAGCTGAGAGACCACCCTTTCAACAGTTGGTTCTGGAAGG
CTGGGGCCAGGCGTTATACTGATAAATACCTTAAAGGTCTTGTGAACTGGATGCCGACTTTGCC
CTTGGTGTCTTTTTGTTTAAGTTTAAACAAGAACATACCCAGAGCAAACAAATTCAAGGATTAC
TTTGAGAACAGGGGCATGGAGGGAGGTGAGCTGAGGCATCCGACTTTCATTCTTGGTGATTGTT
CTGGGAACCACAGTCCGCCTTGCCAAGCGTTCGTATTCCCACCCATGGAGAGACATTTTTAAAA
GTTTTAGTCTTTCTTCATCCCCTTTTACCAGGGAACTGGCTGATGAGGCTTCAGTACCTCTGCT
TGCCACATCCTGCTCCTCAGAGGCCCAACTGGCAGATTGCTCTCTGAGTCCCAAACCCAGCAGA
TAGAAAGAGCCTTGAAACAAACGGAACAGCATATATTGGGAAGGCGATAGCATTGCACATTGGT
TTACATTTCTTTCCCTGCGGATTTTTCTAGAGGTCATAGTGCTTCCAAATCGTTTGATGACATT
ATTGGGTATCATTTATGTTTCTGTCATAATACATGCAATAACATCTAGAGAATCTTCGCAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001414256	(Get FASTA)	NCBI Sequence Viewer
	XP_006251095	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL99875	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000006610.7
	ENSRNOP00000077676.1

RefSeq Acc Id:	XP_006251095 ⟸ XM_006251033
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5YCG4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEWPAGEKQPWLLFAYLTCSHTLNFVPSLGRQTSLTTSVLPRTEQSTTYTDFIYFTAFEGSVRN VSEVSVEYLCSQPCVVNLEAVVSSEFRSSIPVYKKRWRNEKHLHTSRTQIVHVKFPSIMVYRDD YLIRHPISVSPVILRAWITHWHSGGGLNVRGEENLLHAVAKNYTLLQTVPPFERPFKDHQVCLE WNMDYLWSLWANRIPQCPLESDAVPLLSFPYASSGENTGIVKKLPKFQNRELEATRSQRVDYPM VTISLWLYLLHYCEASLCGILYFVDSNEMYGTPSVFLTEDGSLHIQMHLIKGEDLAVKTKFTLP LKEWCRLDISFNGGQIVVTASIGWDLKSYHNQTISFHEDFYYNDTAGYFVVGGSRYVAGIEGFF GPVKYYRLRSLHPAQVLNPFLEKELAEQIKLYYEHCAEVWDIISSYTATVQAGGERRETCDFRN SYLDLKRKYGRAEVCRALPWEKGLRDRHPSLFQTLLQMDLLTAPRNQNDSVLEIGARIFEKAVK RLSGVDGLHQISSAVPLLMYSSCCGYHKASYYLTVFYETGLNGPRDQLQGMLYSLVGGQGSERL SSMNLGYKHYQGVDSYPLDWELSYAYYSNIATKTPLDQHTLQGDQAYVETIRLKDDEILKVQTK EDGDVFMWLKHEATRGNAAAQQRLAQMLFWGQQGVAKNPEAAIEWYAKGALETEDPALIYDYAI VLFKGQGVKKNRRLALELMKKAASKGLHQAVNGLGWYYHKFRKNYAKAAKYWLKAEEMGNPDAS YNLGVLYLDGIFPGLPGRNLTLAGEYFHKAAQGGHIEGTLWCSLYYITGNLETFPRDPEKAVVW AKHVAEKNGYLGHVIRKGLNAYLEGLWHEALLYYVLAAETGIEVSQTNLAHICEERPDLAGRYL GVNCVWRYYNFSVFQIDAPSFAYLKMGDLYYYGHQNQSQDLELSVQMYAQAALDGDSQGFFNLA ALIEEGAVIPHHILEFLEIDPSLHPSNTSILRELYERCWSLGNEESLSPCSLALLYLHLRLLCG ALMHSTLIYFLGTFLLSVVIAWMVLYLQCVSASGSSPAPAWVLADPASSTPSPAVPPAADASDH DPPMMANNPEPRG hide sequence

Ensembl Acc Id:

ENSRNOP00000006610 ⟸ ENSRNOT00000006610

Ensembl Acc Id:

ENSRNOP00000077676 ⟸ ENSRNOT00000113070

RefSeq Acc Id:	NP_001414256 ⟸ NM_001427327
- UniProtKB:	D3ZIJ4 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZIJ4-F1-model_v2	AlphaFold	D3ZIJ4	1-1104	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699339

Promoter ID:

EPDNEW_R9855

Type:

initiation region

Name:

Sel1l3_1

Description:

SEL1L family member 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	14	60,123,113 - 60,123,173	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1562860	AgrOrtholog
BioCyc Gene	G2FUF-15608	BioCyc
Ensembl Genes	ENSRNOG00000004932	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000006610.7	UniProtKB/TrEMBL
	ENSRNOT00000113070.1	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.10	UniProtKB/TrEMBL
InterPro	Sel-1L3	UniProtKB/TrEMBL
	Sel1-like	UniProtKB/TrEMBL
	TPR-like_helical_dom_sf	UniProtKB/TrEMBL
NCBI Gene	360945	ENTREZGENE
PANTHER	PROTEIN SEL-1 HOMOLOG 3	UniProtKB/TrEMBL
	PTHR44444	UniProtKB/TrEMBL
Pfam	Sel1	UniProtKB/TrEMBL
PhenoGen	Sel1l3	PhenoGen
RatGTEx	ENSRNOG00000004932	RatGTEx
SMART	SEL1	UniProtKB/TrEMBL
Superfamily-SCOP	HCP-like	UniProtKB/TrEMBL
UniProt	A0A8I5YCG4	ENTREZGENE, UniProtKB/TrEMBL
	D3ZIJ4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-01-27	Sel1l3	SEL1L family member 3	Sel1l3	sel-1 suppressor of lin-12-like 3 (C. elegans)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2010-02-12	Sel1l3	sel-1 suppressor of lin-12-like 3 (C. elegans)	RGD1562860	similar to RIKEN cDNA 2310045A20	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2009-06-15	RGD1562860	similar to RIKEN cDNA 2310045A20	RGD1310366	similar to RIKEN cDNA 2310045A20	Data merged from RGD:1310366	1643240	APPROVED
2008-04-30	RGD1562860	similar to RIKEN cDNA 2310045A20	RGD1562860_predicted	similar to RIKEN cDNA 2310045A20 (predicted)	'predicted' is removed	2292626	APPROVED
2008-04-30	RGD1310366	similar to RIKEN cDNA 2310045A20	RGD1310366_predicted	similar to RIKEN cDNA 2310045A20 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1562860_predicted	similar to RIKEN cDNA 2310045A20 (predicted)	LOC360945	similar to RIKEN cDNA 2310045A20	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC360945	similar to RIKEN cDNA 2310045A20			Symbol and Name status set to provisional	70820	PROVISIONAL
2005-01-20	RGD1310366_predicted	similar to RIKEN cDNA 2310045A20 (predicted)	LOC289700_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC289700_predicted	similar to RIKEN cDNA 2310045A20 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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