Lypd6b (Ly6/Plaur domain containing 6B) - Rat Genome Database

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Gene: Lypd6b (Ly6/Plaur domain containing 6B) Rattus norvegicus
Analyze
Symbol: Lypd6b
Name: Ly6/Plaur domain containing 6B
RGD ID: 1562767
Description: Predicted to enable acetylcholine receptor regulator activity. Predicted to be located in plasma membrane. Orthologous to human LYPD6B (LY6/PLAUR domain containing 6B); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC362133; ly6/PLAUR domain-containing protein 6B; RGD1562767; similar to RIKEN cDNA 2310010M24
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8354,608,320 - 54,769,974 (+)NCBIGRCr8
mRatBN7.2334,199,101 - 34,360,770 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl334,199,599 - 34,360,770 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx337,569,714 - 37,745,286 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0346,154,432 - 46,329,986 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0343,966,693 - 44,131,818 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0335,271,785 - 35,437,296 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl335,271,786 - 35,437,296 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0340,397,603 - 40,555,551 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4330,849,359 - 30,869,056 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera332,384,248 - 32,545,513 (+)NCBICelera
Cytogenetic Map3q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:26586467  


Genomics

Comparative Map Data
Lypd6b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8354,608,320 - 54,769,974 (+)NCBIGRCr8
mRatBN7.2334,199,101 - 34,360,770 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl334,199,599 - 34,360,770 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx337,569,714 - 37,745,286 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0346,154,432 - 46,329,986 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0343,966,693 - 44,131,818 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0335,271,785 - 35,437,296 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl335,271,786 - 35,437,296 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0340,397,603 - 40,555,551 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4330,849,359 - 30,869,056 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera332,384,248 - 32,545,513 (+)NCBICelera
Cytogenetic Map3q12NCBI
LYPD6B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382149,038,699 - 149,215,262 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2149,038,107 - 149,215,262 (+)EnsemblGRCh38hg38GRCh38
GRCh372149,895,213 - 150,071,776 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362149,603,227 - 149,780,018 (+)NCBINCBI36Build 36hg18NCBI36
Celera2143,508,885 - 143,685,705 (+)NCBICelera
Cytogenetic Map2q23.2NCBI
HuRef2141,793,209 - 141,970,636 (+)NCBIHuRef
CHM1_12149,900,822 - 150,077,602 (+)NCBICHM1_1
T2T-CHM13v2.02149,489,053 - 149,665,643 (+)NCBIT2T-CHM13v2.0
Lypd6b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39249,677,380 - 49,838,861 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl249,677,700 - 49,838,861 (+)EnsemblGRCm39 Ensembl
GRCm38249,787,340 - 49,948,849 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl249,787,688 - 49,948,849 (+)EnsemblGRCm38mm10GRCm38
MGSCv37249,643,206 - 49,804,366 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36249,609,695 - 49,770,855 (+)NCBIMGSCv36mm8
Celera251,460,729 - 51,622,118 (+)NCBICelera
Cytogenetic Map2C1.1NCBI
cM Map228.74NCBI
Lypd6b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544015,014,264 - 15,027,648 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544014,865,736 - 15,028,655 (+)NCBIChiLan1.0ChiLan1.0
LYPD6B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21325,713,273 - 25,890,555 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B25,728,237 - 25,905,525 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B10,647,871 - 10,825,062 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B153,478,374 - 153,575,462 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B153,479,334 - 153,576,190 (+)Ensemblpanpan1.1panPan2
LYPD6B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11950,692,220 - 50,855,061 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1950,813,689 - 50,978,961 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01952,164,791 - 52,330,414 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1952,246,558 - 52,329,581 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11950,807,650 - 50,973,190 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01950,942,420 - 51,108,413 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01952,341,463 - 52,507,252 (+)NCBIUU_Cfam_GSD_1.0
Lypd6b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303113,372,508 - 113,518,367 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646928,100,477 - 28,119,342 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646928,098,841 - 28,245,200 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LYPD6B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl152,952,546 - 2,972,920 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1152,957,051 - 3,179,409 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2152,443,118 - 2,477,085 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LYPD6B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11034,511,293 - 34,644,953 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1034,634,763 - 34,644,939 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040164,885,952 - 165,010,527 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lypd6b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248661,940,123 - 1,959,344 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248661,708,769 - 1,960,396 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Lypd6b
1700 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:169
Count of miRNA genes:121
Interacting mature miRNAs:147
Transcripts:ENSRNOT00000065989
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298073Cm13Cardiac mass QTL 132.5heart mass (VT:0007028)heart wet weight (CMO:0000069)32501391138192233Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31500542276927699Rat
631832Sach1Saccharin preference QTL 12.70.02consumption behavior trait (VT:0002069)calculated saccharin drink intake volume (CMO:0001600)32749462144188411Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3139874793Rat
9590286Uminl1Urine mineral level QTL 13.50.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)32824968773249687Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)3136847613Rat
2313093Bmd77Bone mineral density QTL 772.20.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)32749462150302886Rat
12879852Cm93Cardiac mass QTL 930.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)31831145447233430Rat
12879853Am5Aortic mass QTL 50.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)31831145447233430Rat
12879854Kidm63Kidney mass QTL 630.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)31831145447233430Rat
61356Bp37Blood pressure QTL 373blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)33068464275684642Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
12879849Bw180Body weight QTL 1800.037body mass (VT:0001259)body weight (CMO:0000012)31831145447233430Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)31077870450302886Rat
12879850Cm91Cardiac mass QTL 910.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)31831145447233430Rat
2313101Bmd76Bone mineral density QTL 763.60.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)32749462150302886Rat
731172Bp151Blood pressure QTL 1510.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31831145447233430Rat
12879851Cm92Cardiac mass QTL 920.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)31831145447233430Rat
8694196Abfw2Abdominal fat weight QTL 216.580.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)32824968773249687Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
12879868Am6Aortic mass QTL 60.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)33142640370668733Rat
11565451Bw177Body weight QTL 1770.002body mass (VT:0001259)body weight (CMO:0000012)33142640370668733Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
11565452Kidm57Kidney mass QTL 570.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)33142640370668733Rat
12879866Cm94Cardiac mass QTL 940.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)33142640370668733Rat
12879867Cm95Cardiac mass QTL 950.047heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)33142640370668733Rat
2302055Pia30Pristane induced arthritis QTL 303.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)32793691972936919Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)33370334778196190Rat
2303593Gluco46Glucose level QTL 463blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)32846857173468571Rat
1354590Despr11Despair related QTL 110.000031locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)32846857173468571Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)body weight (CMO:0000012)31737470335528639Rat
2313079Bss73Bone structure and strength QTL 731.5tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)32749462150302886Rat
631647Bp122Blood pressure QTL 1226.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)33068464275684642Rat
2313076Bss74Bone structure and strength QTL 7420.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)32749462150302886Rat
1300169Bp177Blood pressure QTL 1772.96arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)33370334761017857Rat
9590136Scort3Serum corticosterone level QTL 323.370.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)32824968773249687Rat
10450804Scl70Serum cholesterol level QTL 704.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32071409065714090Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)33035677398535386Rat
8552950Pigfal12Plasma insulin-like growth factor 1 level QTL 127.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)32824968773249687Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)31695470861954708Rat
10450794Scl69Serum cholesterol level QTL 696.30.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32071409065714090Rat
8694386Bw159Body weight QTL 1594.520.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)32824968773249687Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)333703347104104347Rat
2313049Bss72Bone structure and strength QTL 722.60.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)32749462150302886Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3138710544Rat
2301400Cm68Cardiac mass QTL 680.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)33142640370668733Rat

Markers in Region
D3Rat47  
Rat AssemblyChrPosition (strand)SourceJBrowse
RGSC_v3.4330,835,250 - 30,835,368UniSTSRGSC3.4
RGSC_v3.4330,835,249 - 30,835,368RGDRGSC3.4
RGSC_v3.1330,731,621 - 30,731,740RGD
Celera332,512,845 - 32,512,963UniSTS
RH 3.4 Map3511.02RGD
RH 3.4 Map3511.02UniSTS
SHRSP x BN Map316.3599UniSTS
SHRSP x BN Map316.3599RGD
Cytogenetic Map3q12UniSTS
D3Got206  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2334,197,864 - 34,198,024 (+)MAPPERmRatBN7.2
Rnor_6.0335,270,054 - 35,270,211NCBIRnor6.0
Rnor_5.0340,396,403 - 40,396,560UniSTSRnor5.0
RGSC_v3.4330,771,423 - 30,771,580UniSTSRGSC3.4
Celera332,382,555 - 32,382,673UniSTS
Cytogenetic Map3q12UniSTS
RH141888  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2334,307,577 - 34,307,794 (+)MAPPERmRatBN7.2
Rnor_6.0335,383,246 - 35,383,462NCBIRnor6.0
Rnor_5.0340,503,785 - 40,504,001UniSTSRnor5.0
Celera332,491,894 - 32,492,110UniSTS
RH 3.4 Map3413.32UniSTS
Cytogenetic Map3q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 7 26 113 46 45 14 20 14 6 141 66 93 45 58 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001395757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000065989   ⟹   ENSRNOP00000063299
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl334,199,599 - 34,360,770 (+)Ensembl
Rnor_6.0 Ensembl335,271,786 - 35,437,296 (+)Ensembl
RefSeq Acc Id: NM_001395757   ⟹   NP_001382686
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8354,608,320 - 54,769,974 (+)NCBI
mRatBN7.2334,199,105 - 34,360,770 (+)NCBI
RefSeq Acc Id: XM_039105382   ⟹   XP_038961310
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8354,608,340 - 54,769,970 (+)NCBI
mRatBN7.2334,199,103 - 34,360,770 (+)NCBI
RefSeq Acc Id: XM_039105384   ⟹   XP_038961312
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8354,608,343 - 54,769,970 (+)NCBI
mRatBN7.2334,199,105 - 34,360,770 (+)NCBI
RefSeq Acc Id: XM_039105387   ⟹   XP_038961315
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8354,608,343 - 54,769,970 (+)NCBI
mRatBN7.2334,199,105 - 34,360,770 (+)NCBI
RefSeq Acc Id: XM_039105390   ⟹   XP_038961318
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8354,608,340 - 54,769,970 (+)NCBI
mRatBN7.2334,199,103 - 34,360,770 (+)NCBI
RefSeq Acc Id: XM_063284108   ⟹   XP_063140178
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8354,608,340 - 54,769,970 (+)NCBI
RefSeq Acc Id: XM_063284109   ⟹   XP_063140179
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8354,609,071 - 54,769,970 (+)NCBI
RefSeq Acc Id: XM_063284110   ⟹   XP_063140180
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8354,609,019 - 54,769,970 (+)NCBI
Ensembl Acc Id: ENSRNOP00000063299   ⟸   ENSRNOT00000065989
RefSeq Acc Id: XP_038961310   ⟸   XM_039105382
- Peptide Label: isoform X1
- UniProtKB: A6JEZ8 (UniProtKB/TrEMBL),   D3ZUF1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038961318   ⟸   XM_039105390
- Peptide Label: isoform X1
- UniProtKB: A6JEZ8 (UniProtKB/TrEMBL),   D3ZUF1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038961312   ⟸   XM_039105384
- Peptide Label: isoform X1
- UniProtKB: A6JEZ8 (UniProtKB/TrEMBL),   D3ZUF1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038961315   ⟸   XM_039105387
- Peptide Label: isoform X1
- UniProtKB: A6JEZ8 (UniProtKB/TrEMBL),   D3ZUF1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001382686   ⟸   NM_001395757
- Peptide Label: precursor
- UniProtKB: A6JEZ8 (UniProtKB/TrEMBL),   D3ZUF1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140178   ⟸   XM_063284108
- Peptide Label: isoform X1
- UniProtKB: A6JEZ8 (UniProtKB/TrEMBL),   D3ZUF1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140180   ⟸   XM_063284110
- Peptide Label: isoform X1
- UniProtKB: A6JEZ8 (UniProtKB/TrEMBL),   D3ZUF1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140179   ⟸   XM_063284109
- Peptide Label: isoform X1
- UniProtKB: A6JEZ8 (UniProtKB/TrEMBL),   D3ZUF1 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZUF1-F1-model_v2 AlphaFold D3ZUF1 1-205 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692070
Promoter ID:EPDNEW_R2595
Type:single initiation site
Name:Lypd6b_1
Description:LY6/PLAUR domain containing 6B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0335,271,834 - 35,271,894EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562767 AgrOrtholog
BioCyc Gene G2FUF-49758 BioCyc
Ensembl Genes ENSRNOG00000004614 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000065989.3 UniProtKB/TrEMBL
Gene3D-CATH 2.10.60.10 UniProtKB/TrEMBL
InterPro LYPD6-like UniProtKB/TrEMBL
  Snake_toxin-like_sf UniProtKB/TrEMBL
NCBI Gene 362133 ENTREZGENE
PANTHER LY6/PLAUR DOMAIN-CONTAINING PROTEIN 6B UniProtKB/TrEMBL
  PTHR31171 UniProtKB/TrEMBL
Pfam UPAR_LY6_2 UniProtKB/TrEMBL
PhenoGen Lypd6b PhenoGen
RatGTEx ENSRNOG00000004614 RatGTEx
Superfamily-SCOP SSF57302 UniProtKB/TrEMBL
UniProt A6JEZ8 ENTREZGENE, UniProtKB/TrEMBL
  D3ZUF1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-09-15 Lypd6b  Ly6/Plaur domain containing 6B  Lypd6b  LY6/PLAUR domain containing 6B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-09 Lypd6b  LY6/PLAUR domain containing 6B  RGD1562767  similar to RIKEN cDNA 2310010M24   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1562767  similar to RIKEN cDNA 2310010M24   RGD1562767_predicted  similar to RIKEN cDNA 2310010M24 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1562767_predicted  similar to RIKEN cDNA 2310010M24 (predicted)  LOC362133  similar to RIKEN cDNA 2310010M24  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC362133  similar to RIKEN cDNA 2310010M24      Symbol and Name status set to provisional 70820 PROVISIONAL