Myo18a (myosin XVIIIa) - Rat Genome Database

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Gene: Myo18a (myosin XVIIIa) Rattus norvegicus
Analyze
Symbol: Myo18a
Name: myosin XVIIIa
RGD ID: 1562698
Description: Predicted to enable ADP binding activity; ATP binding activity; and actin filament binding activity. Predicted to be involved in several processes, including asymmetric Golgi ribbon formation; canonical NF-kappaB signal transduction; and positive regulation of transport. Predicted to act upstream of or within cellular response to type II interferon. Predicted to be located in several cellular components, including actomyosin; brush border; and trans-Golgi network. Predicted to be part of myosin II complex. Predicted to be active in cytoplasm and myosin filament. Orthologous to human MYO18A (myosin XVIIIA); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; acetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: basic salivary proline-rich protein 1-like; basic salivary proline-rich protein 2-like; LOC103693393; LOC360570; myosin 18a; similar to myosin XVIIIa; unconventional myosin-XVIIIa
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81063,152,303 - 63,253,543 (+)NCBIGRCr8
mRatBN7.21062,654,218 - 62,755,465 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1062,654,281 - 62,755,468 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1067,286,116 - 67,386,748 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01066,791,627 - 66,892,122 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01062,261,757 - 62,362,375 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01064,979,770 - 65,080,535 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1064,979,770 - 65,080,535 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01066,545,745 - 66,646,100 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41063,818,690 - 63,906,414 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1061,634,525 - 61,734,518 (+)NCBICelera
Cytogenetic Map10q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
acetamide  (EXP)
acrylamide  (ISO)
aflatoxin B1  (EXP,ISO)
Aflatoxin B2 alpha  (ISO)
aminoglutethimide  (ISO)
amphetamine  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
beauvericin  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
cadmium dichloride  (EXP)
caffeine  (ISO)
carbon nanotube  (ISO)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
curcumin  (ISO)
DDE  (ISO)
dicrotophos  (ISO)
elemental selenium  (ISO)
ethanol  (ISO)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
genistein  (ISO)
glafenine  (EXP)
inulin  (ISO)
methamphetamine  (ISO)
methapyrilene  (ISO)
methidathion  (ISO)
nickel sulfate  (ISO)
p-menthan-3-ol  (ISO)
paracetamol  (EXP,ISO)
pentanal  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
resveratrol  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
sodium fluoride  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
tetrachloromethane  (EXP,ISO)
triclosan  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
valproic acid  (EXP,ISO)
vanadium atom  (ISO)
vanadium(0)  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:10733906   PMID:16087679   PMID:18854160   PMID:19144319   PMID:19837035   PMID:19946888   PMID:21123169   PMID:22114352   PMID:22681889   PMID:23345592   PMID:23990465   PMID:24485452  
PMID:25002582   PMID:25965346   PMID:35352799  


Genomics

Comparative Map Data
Myo18a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81063,152,303 - 63,253,543 (+)NCBIGRCr8
mRatBN7.21062,654,218 - 62,755,465 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1062,654,281 - 62,755,468 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1067,286,116 - 67,386,748 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01066,791,627 - 66,892,122 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01062,261,757 - 62,362,375 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01064,979,770 - 65,080,535 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1064,979,770 - 65,080,535 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01066,545,745 - 66,646,100 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41063,818,690 - 63,906,414 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1061,634,525 - 61,734,518 (+)NCBICelera
Cytogenetic Map10q24NCBI
MYO18A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381729,071,122 - 29,180,398 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1729,071,122 - 29,180,398 (-)EnsemblGRCh38hg38GRCh38
GRCh371727,398,140 - 27,507,416 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361724,424,654 - 24,531,533 (-)NCBINCBI36Build 36hg18NCBI36
Build 341724,424,664 - 24,426,753NCBI
Celera1724,259,886 - 24,366,927 (-)NCBICelera
Cytogenetic Map17q11.2NCBI
HuRef1723,608,764 - 23,715,901 (-)NCBIHuRef
CHM1_11727,463,017 - 27,569,879 (-)NCBICHM1_1
T2T-CHM13v2.01730,013,842 - 30,123,093 (-)NCBIT2T-CHM13v2.0
Myo18a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391177,654,066 - 77,756,806 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1177,654,072 - 77,756,806 (+)EnsemblGRCm39 Ensembl
GRCm381177,763,240 - 77,865,988 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1177,763,246 - 77,865,980 (+)EnsemblGRCm38mm10GRCm38
MGSCv371177,590,767 - 77,679,482 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361177,593,460 - 77,682,175 (+)NCBIMGSCv36mm8
Celera1185,276,608 - 85,365,361 (+)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1146.74NCBI
Myo18a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554814,028,706 - 4,113,878 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554814,020,274 - 4,115,014 (+)NCBIChiLan1.0ChiLan1.0
MYO18A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21935,247,597 - 35,384,086 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11737,128,726 - 37,265,227 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01727,593,787 - 27,700,801 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11728,116,279 - 28,208,301 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1728,116,279 - 28,208,301 (+)Ensemblpanpan1.1panPan2
MYO18A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1943,226,170 - 43,325,026 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl943,227,187 - 43,322,545 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha942,381,105 - 42,479,871 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0944,043,174 - 44,141,965 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl944,043,182 - 44,142,168 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1942,826,664 - 42,925,410 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0943,119,129 - 43,217,629 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0943,197,914 - 43,296,683 (-)NCBIUU_Cfam_GSD_1.0
Myo18a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560242,379,220 - 42,473,940 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365385,258,401 - 5,344,669 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365385,257,165 - 5,351,757 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MYO18A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11622,836,856 - 22,942,366 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660757,163,834 - 7,269,590 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Myo18a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247861,629,949 - 1,715,031 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247861,626,555 - 1,726,204 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Myo18a
419 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:289
Count of miRNA genes:166
Interacting mature miRNAs:191
Transcripts:ENSRNOT00000043448
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
1598852Anxrr19Anxiety related response QTL 195.07body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)101816784163167841Rat
2313055Bw96Body weight QTL 963.60.0001body mass (VT:0001259)body weight (CMO:0000012)101960648364606483Rat
2313087Bmd80Bone mineral density QTL 803.20.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)101960648364606483Rat
1554317Bmd4Bone mineral density QTL 49.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)101981604299406971Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102242750090627625Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102652195798952741Rat
2300171Bmd58Bone mineral density QTL 584.90.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)102694462871944628Rat
10402859Bp381Blood pressure QTL 3810.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
2292441Bp308Blood pressure QTL 308arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
724527Bp148Blood pressure QTL 1480.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102845313673453136Rat
1331762Rf40Renal function QTL 403.873kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)102929950464155584Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
631557Bp136Blood pressure QTL 1360.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)103063205375632053Rat
1576311Pia26Pristane induced arthritis QTL 26joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103122402675632053Rat
1578779Tcas10Tongue tumor susceptibility QTL 103.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)103129743976297439Rat
1576319Cia29Collagen induced arthritis QTL 29joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103397392178973921Rat
1358897Stresp6Stress response QTL 64.170.022blood norepinephrine amount (VT:0005663)plasma norepinephrine level (CMO:0001010)103539226764155584Rat
61441Btemp1Thermal response to stress QTL 14body temperature trait (VT:0005535)core body temperature (CMO:0001036)103539245763642539Rat
2317042Aia20Adjuvant induced arthritis QTL 203.38joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)103756507982565079Rat
2317043Aia7Adjuvant induced arthritis QTL 73.82joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)103756507982565079Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040035094102359817Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
631552Vetf2Vascular elastic tissue fragility QTL 24.50.0002aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)104114263386142633Rat
61463Bp12Blood pressure QTL 126.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104133325886333258Rat
8552805Bw145Body weight QTL 1452.2body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)104194452678307017Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)14232313287323132Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)14232313287323132Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)14232313287323132Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)14232313287323132Rat
70198BpQTLcluster9Blood pressure QTL cluster 92.94arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)104232313287323132Rat
6893342Cm78Cardiac mass QTL 780.10.88heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)104287676679813922Rat
9589030Epfw9Epididymal fat weight QTL 919.240.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)104444169989441699Rat
7411614Foco18Food consumption QTL 180.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)104444169989441699Rat
8694173Bw149Body weight QTL 1494.380.001body mass (VT:0001259)body weight gain (CMO:0000420)104444169989441699Rat
2300218Hpcl2Hepatic cholesterol level QTL 2liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)104502965095600334Rat
631547Bp87Blood pressure QTL 874.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104736947092369470Rat
2293705Bmd25Bone mineral density QTL 257.10.0001femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)104944455181709989Rat
7207811Bmd90Bone mineral density QTL 905.2femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)104944455181709989Rat
2293652Bmd22Bone mineral density QTL 224.90.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)104944455181709989Rat
2293669Bmd33Bone mineral density QTL 334.50.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)104944455181709989Rat
2293679Bmd30Bone mineral density QTL 303.50.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)104944455181709989Rat
1549846Scl47Serum cholesterol level QTL 473.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)105057470795574707Rat
70364Bp72Blood pressure QTL 72arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105112110096121100Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1051770177107211142Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1051770177107211142Rat
1359017Hrtrt21Heart rate QTL 212.4heart pumping trait (VT:2000009)heart rate (CMO:0000002)105177294096772940Rat
631530Tls3T-lymphoma susceptibility QTL 300.0001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)105177461295600334Rat
631535Cm51Cardiac mass QTL 513heart mass (VT:0007028)calculated heart weight (CMO:0000073)105178628291669536Rat
2306787Ean3Experimental allergic neuritis QTL 33.1nervous system integrity trait (VT:0010566)body weight loss (CMO:0001399)105379738566979128Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1053797385107211142Rat
70164Bw21Body weight QTL 214.360.00005body mass (VT:0001259)body weight (CMO:0000012)105379749498952626Rat
1354608Cm33Cardiac mass QTL 332.8heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)105480929299809292Rat
2312662Slep8Serum leptin concentration QTL 80.05blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1057134272102134272Rat
2312668Scl65Serum cholesterol level QTL 650.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1057134272102134272Rat
2312672Insul15Insulin level QTL 150.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1057134272102134272Rat
1549831Bss6Bone structure and strength QTL 64lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)1057576521102576521Rat
2293698Bss43Bone structure and strength QTL 435.330.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1059209888104209888Rat
1331839Eae18bExperimental allergic encephalomyelitis QTL 18b5.80.03nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)106124830367785171Rat
70363Bp71Blood pressure QTL 710.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)106134527681714865Rat
2306970Anxrr22Anxiety related response QTL 225.95fear/anxiety-related behavior trait (VT:1000241)number of periods of voluntary immobility (CMO:0001045)106134527698211570Rat
6893336Cm75Cardiac mass QTL 750.10.87heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)106134527699703528Rat
1558643Cm44Cardiac mass QTL 444.80.0000368heart mass (VT:0007028)heart wet weight (CMO:0000069)106134527699703528Rat
631526Bp76Blood pressure QTL 760.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)106134541366743655Rat
61402Niddm3Non-insulin dependent diabetes mellitus QTL 34.58blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)106134541382564856Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1062057807107057807Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1062057807107057807Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 47 31 19 31 8 11 74 35 33 11 8
Low 10 10 10 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001172137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001415683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC105827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000043448   ⟹   ENSRNOP00000050980
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1062,654,281 - 62,754,967 (+)Ensembl
Rnor_6.0 Ensembl1064,980,386 - 65,066,612 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000088919   ⟹   ENSRNOP00000070473
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1062,654,281 - 62,754,967 (+)Ensembl
Rnor_6.0 Ensembl1064,979,770 - 65,080,535 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000095502   ⟹   ENSRNOP00000077922
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1062,654,281 - 62,754,967 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000098495   ⟹   ENSRNOP00000080654
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1062,654,281 - 62,754,967 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000100376   ⟹   ENSRNOP00000097807
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1062,654,281 - 62,754,967 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000102240   ⟹   ENSRNOP00000084388
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1062,692,016 - 62,755,468 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000102845   ⟹   ENSRNOP00000085273
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1062,654,324 - 62,754,967 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000109794   ⟹   ENSRNOP00000089053
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1062,692,013 - 62,754,967 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000110549   ⟹   ENSRNOP00000090809
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1062,692,019 - 62,755,468 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000113761   ⟹   ENSRNOP00000082563
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1062,692,016 - 62,754,967 (+)Ensembl
RefSeq Acc Id: NM_001172137   ⟹   NP_001165608
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81063,152,364 - 63,253,543 (+)NCBI
mRatBN7.21062,654,283 - 62,755,465 (+)NCBI
Rnor_6.01064,979,770 - 65,080,535 (-)NCBI
Rnor_5.01066,545,745 - 66,646,100 (+)NCBI
Celera1061,634,525 - 61,734,518 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001415683   ⟹   NP_001402612
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81063,152,364 - 63,253,543 (+)NCBI
mRatBN7.21062,654,283 - 62,755,465 (+)NCBI
RefSeq Acc Id: XM_039086333   ⟹   XP_038942261
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81063,152,303 - 63,248,234 (+)NCBI
mRatBN7.21062,654,218 - 62,754,346 (+)NCBI
RefSeq Acc Id: XM_039086335   ⟹   XP_038942263
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81063,152,303 - 63,248,234 (+)NCBI
mRatBN7.21062,654,218 - 62,754,346 (+)NCBI
RefSeq Acc Id: XM_039086337   ⟹   XP_038942265
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81063,152,303 - 63,248,234 (+)NCBI
mRatBN7.21062,654,218 - 62,754,346 (+)NCBI
RefSeq Acc Id: XM_039086340   ⟹   XP_038942268
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81063,190,114 - 63,248,234 (+)NCBI
mRatBN7.21062,692,056 - 62,754,346 (+)NCBI
RefSeq Acc Id: XM_039086344   ⟹   XP_038942272
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81063,190,086 - 63,248,234 (+)NCBI
mRatBN7.21062,692,006 - 62,754,346 (+)NCBI
RefSeq Acc Id: XM_063269353   ⟹   XP_063125423
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81063,204,441 - 63,248,234 (+)NCBI
RefSeq Acc Id: XM_063269354   ⟹   XP_063125424
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81063,204,441 - 63,248,234 (+)NCBI
RefSeq Acc Id: XM_063269355   ⟹   XP_063125425
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81063,204,442 - 63,248,234 (+)NCBI
RefSeq Acc Id: XM_063269357   ⟹   XP_063125427
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81063,204,443 - 63,248,234 (+)NCBI
RefSeq Acc Id: XM_063269358   ⟹   XP_063125428
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81063,204,442 - 63,248,234 (+)NCBI
RefSeq Acc Id: XM_063269359   ⟹   XP_063125429
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81063,155,696 - 63,248,234 (+)NCBI
RefSeq Acc Id: XM_063269360   ⟹   XP_063125430
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81063,196,357 - 63,248,234 (+)NCBI
RefSeq Acc Id: XM_063269361   ⟹   XP_063125431
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81063,152,303 - 63,248,234 (+)NCBI
RefSeq Acc Id: XM_063269362   ⟹   XP_063125432
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81063,152,303 - 63,248,234 (+)NCBI
RefSeq Acc Id: XM_063269363   ⟹   XP_063125433
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81063,152,303 - 63,248,234 (+)NCBI
RefSeq Acc Id: XM_063269364   ⟹   XP_063125434
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81063,204,457 - 63,253,542 (+)NCBI
RefSeq Acc Id: XM_063269365   ⟹   XP_063125435
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81063,190,113 - 63,248,234 (+)NCBI
RefSeq Acc Id: XM_063269366   ⟹   XP_063125436
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81063,204,458 - 63,253,542 (+)NCBI
RefSeq Acc Id: XM_063269367   ⟹   XP_063125437
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81063,204,458 - 63,253,542 (+)NCBI
RefSeq Acc Id: XM_063269368   ⟹   XP_063125438
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81063,204,458 - 63,253,542 (+)NCBI
RefSeq Acc Id: XM_063269369   ⟹   XP_063125439
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81063,204,458 - 63,253,542 (+)NCBI
RefSeq Acc Id: XM_063269370   ⟹   XP_063125440
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81063,152,303 - 63,253,542 (+)NCBI
RefSeq Acc Id: XM_063269371   ⟹   XP_063125441
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81063,152,303 - 63,253,542 (+)NCBI
RefSeq Acc Id: XM_063269372   ⟹   XP_063125442
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81063,152,303 - 63,253,542 (+)NCBI
RefSeq Acc Id: XM_063269373   ⟹   XP_063125443
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81063,152,303 - 63,253,542 (+)NCBI
RefSeq Acc Id: XM_063269374   ⟹   XP_063125444
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81063,152,303 - 63,253,542 (+)NCBI
RefSeq Acc Id: XM_063269375   ⟹   XP_063125445
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81063,152,303 - 63,253,542 (+)NCBI
RefSeq Acc Id: XM_063269376   ⟹   XP_063125446
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81063,152,303 - 63,253,542 (+)NCBI
RefSeq Acc Id: XM_063269377   ⟹   XP_063125447
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81063,225,125 - 63,248,234 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001165608 (Get FASTA)   NCBI Sequence Viewer  
  NP_001402612 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942261 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942263 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942265 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942268 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942272 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125423 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125424 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125425 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125427 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125428 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125429 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125430 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125431 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125432 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125433 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125434 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125435 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125436 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125437 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125438 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125439 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125440 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125441 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125442 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125443 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125444 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125445 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125446 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125447 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI05828 (Get FASTA)   NCBI Sequence Viewer  
  D3ZFD0 (Get FASTA)   NCBI Sequence Viewer  
  EDM05296 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000050980
  ENSRNOP00000050980.5
  ENSRNOP00000070473.2
  ENSRNOP00000077922
  ENSRNOP00000077922.1
  ENSRNOP00000080654.1
  ENSRNOP00000082563.1
  ENSRNOP00000084388.1
  ENSRNOP00000085273.1
  ENSRNOP00000089053.1
  ENSRNOP00000090809.1
  ENSRNOP00000097807.1
RefSeq Acc Id: NP_001165608   ⟸   NM_001172137
- Peptide Label: isoform 1
- UniProtKB: A6HGZ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000050980   ⟸   ENSRNOT00000043448
RefSeq Acc Id: ENSRNOP00000070473   ⟸   ENSRNOT00000088919
RefSeq Acc Id: XP_038942261   ⟸   XM_039086333
- Peptide Label: isoform X6
- UniProtKB: A0A8I5Y6H7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942263   ⟸   XM_039086335
- Peptide Label: isoform X8
- UniProtKB: A0A8I5Y6H7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942265   ⟸   XM_039086337
- Peptide Label: isoform X9
- UniProtKB: A0A8I5Y6H7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942272   ⟸   XM_039086344
- Peptide Label: isoform X15
- UniProtKB: A0A8I6AAE3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942268   ⟸   XM_039086340
- Peptide Label: isoform X14
- UniProtKB: A0A8I6AAE3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000085273   ⟸   ENSRNOT00000102845
RefSeq Acc Id: ENSRNOP00000082563   ⟸   ENSRNOT00000113761
RefSeq Acc Id: ENSRNOP00000080654   ⟸   ENSRNOT00000098495
RefSeq Acc Id: ENSRNOP00000089053   ⟸   ENSRNOT00000109794
RefSeq Acc Id: ENSRNOP00000077922   ⟸   ENSRNOT00000095502
RefSeq Acc Id: ENSRNOP00000090809   ⟸   ENSRNOT00000110549
RefSeq Acc Id: ENSRNOP00000097807   ⟸   ENSRNOT00000100376
RefSeq Acc Id: ENSRNOP00000084388   ⟸   ENSRNOT00000102240
RefSeq Acc Id: NP_001402612   ⟸   NM_001415683
- Peptide Label: isoform 2
- UniProtKB: A6HGZ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125440   ⟸   XM_063269370
- Peptide Label: isoform X21
- UniProtKB: A6HGZ1 (UniProtKB/TrEMBL),   A0A8I6A2X3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125441   ⟸   XM_063269371
- Peptide Label: isoform X22
- UniProtKB: A0A8I5Y6H7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125443   ⟸   XM_063269373
- Peptide Label: isoform X24
- UniProtKB: A6HGZ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125444   ⟸   XM_063269374
- Peptide Label: isoform X25
- UniProtKB: A6HGZ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125446   ⟸   XM_063269376
- Peptide Label: isoform X27
- UniProtKB: A6HGZ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125442   ⟸   XM_063269372
- Peptide Label: isoform X23
- UniProtKB: A6HGZ1 (UniProtKB/TrEMBL),   A0A0G2JY08 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125445   ⟸   XM_063269375
- Peptide Label: isoform X26
- UniProtKB: A0A8I6ATN3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125431   ⟸   XM_063269361
- Peptide Label: isoform X10
- UniProtKB: A6HGZ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125432   ⟸   XM_063269362
- Peptide Label: isoform X11
- UniProtKB: A0A8I6ATN3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125433   ⟸   XM_063269363
- Peptide Label: isoform X12
- UniProtKB: A0A8I6ATN3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125429   ⟸   XM_063269359
- Peptide Label: isoform X6
- UniProtKB: A0A8I5Y6H7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125435   ⟸   XM_063269365
- Peptide Label: isoform X16
- UniProtKB: A0A8I6AAE3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125430   ⟸   XM_063269360
- Peptide Label: isoform X7
- UniProtKB: A0A8I6A163 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125423   ⟸   XM_063269353
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AAE3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125424   ⟸   XM_063269354
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AAE3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125428   ⟸   XM_063269358
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AAE3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125425   ⟸   XM_063269355
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AAE3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125427   ⟸   XM_063269357
- Peptide Label: isoform X4
- UniProtKB: A0A8I6AAE3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125434   ⟸   XM_063269364
- Peptide Label: isoform X13
- UniProtKB: A0A8I6A9C6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125436   ⟸   XM_063269366
- Peptide Label: isoform X17
- UniProtKB: A0A8I6A9C6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125437   ⟸   XM_063269367
- Peptide Label: isoform X18
- UniProtKB: A0A8I6A9C6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125438   ⟸   XM_063269368
- Peptide Label: isoform X19
- UniProtKB: A0A8I6A9C6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125439   ⟸   XM_063269369
- Peptide Label: isoform X20
- UniProtKB: A0A8I6A9C6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125447   ⟸   XM_063269377
- Peptide Label: isoform X28
Protein Domains
IQ   Myosin motor   Myosin N-terminal SH3-like   PDZ

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZFD0-F1-model_v2 AlphaFold D3ZFD0 1-2044 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697460
Promoter ID:EPDNEW_R7985
Type:initiation region
Name:Myo18a_1
Description:myosin XVIIIa
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01065,080,533 - 65,080,593EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562698 AgrOrtholog
BioCyc Gene G2FUF-24114 BioCyc
Ensembl Genes ENSRNOG00000033101 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000043448 ENTREZGENE
  ENSRNOT00000043448.6 UniProtKB/TrEMBL
  ENSRNOT00000088919.2 UniProtKB/TrEMBL
  ENSRNOT00000095502 ENTREZGENE
  ENSRNOT00000095502.1 UniProtKB/TrEMBL
  ENSRNOT00000098495.1 UniProtKB/TrEMBL
  ENSRNOT00000100376.1 UniProtKB/TrEMBL
  ENSRNOT00000102240.1 UniProtKB/TrEMBL
  ENSRNOT00000102845.1 UniProtKB/TrEMBL
  ENSRNOT00000109794.1 UniProtKB/TrEMBL
  ENSRNOT00000110549.1 UniProtKB/TrEMBL
  ENSRNOT00000113761.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.820 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.20.5.340 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.20.58.530 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.30.42.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.70.1590 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.850.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Myosin VI head, motor domain, U50 subdomain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Myosin, subunit A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Vasodilator-stimulated phosphoprotein UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7381645 IMAGE-MGC_LOAD
InterPro IQ_motif_EF-hand-BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinesin_motor_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Myosin_head_motor_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Myosin_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Myosin_tail UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MYSc_Myo18 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:125190 IMAGE-MGC_LOAD
NCBI Gene 360570 ENTREZGENE
PANTHER MYOSIN HEAVY CHAIN, NON-MUSCLE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR45615:SF13 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Myosin_head UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Myosin_tail_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Myo18a PhenoGen
PRINTS MYOSINHEAVY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE MYOSIN_MOTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PS50096 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000033101 RatGTEx
SMART MYSc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00015 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Myosin rod fragments UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF50156 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JY08 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5Y6H7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZQS0_RAT UniProtKB/TrEMBL
  A0A8I5ZUC3_RAT UniProtKB/TrEMBL
  A0A8I6A163 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A2X3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A9C6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AAE3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ATN3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2UMC0_RAT UniProtKB/TrEMBL
  A6HGZ1 ENTREZGENE, UniProtKB/TrEMBL
  D3ZFD0 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Myo18a  myosin XVIIIa  LOC103693393  basic salivary proline-rich protein 2-like  Data merged from RGD:9312095 737654 PROVISIONAL
2014-08-25 LOC103693393  basic salivary proline-rich protein 2-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2010-12-08 Myo18a  myosin XVIIIa  LOC360570  similar to myosin XVIIIa  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 LOC360570  similar to myosin XVIIIa      Symbol and Name status set to provisional 70820 PROVISIONAL