Nbea (neurobeachin) - Rat Genome Database

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Gene: Nbea (neurobeachin) Rattus norvegicus
Analyze
Symbol: Nbea
Name: neurobeachin
RGD ID: 1562629
Description: Predicted to enable protein kinase binding activity. Predicted to be involved in regulation of neurotransmitter receptor localization to postsynaptic specialization membrane and synapse organization. Predicted to act upstream of or within hematopoietic stem cell homeostasis and protein localization. Is active in GABA-ergic synapse and cerebellar Golgi cell to granule cell synapse. Is extrinsic component of postsynaptic membrane. Orthologous to human NBEA (neurobeachin); INTERACTS WITH bisphenol A; methoxychlor; PCB138.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC361948; RGD1562629; similar to neurobeachin
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82141,930,147 - 142,489,172 (-)NCBIGRCr8
mRatBN7.22139,780,021 - 140,338,639 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2139,780,021 - 140,340,584 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.02145,011,648 - 145,513,439 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02164,423,679 - 164,925,385 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42144,839,771 - 145,404,337 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2134,259,760 - 134,817,258 (-)NCBICelera
Cytogenetic Map2q26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Identification of a prognostic 5-Gene expression signature for gastric cancer. Hou JY, etal., J Cancer Res Clin Oncol. 2017 Apr;143(4):619-629. doi: 10.1007/s00432-016-2324-z. Epub 2016 Dec 29.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Neurobeachin: A protein kinase A-anchoring, beige/Chediak-higashi protein homolog implicated in neuronal membrane traffic. Wang X, etal., J Neurosci. 2000 Dec 1;20(23):8551-65. doi: 10.1523/JNEUROSCI.20-23-08551.2000.
Additional References at PubMed
PMID:21821005   PMID:26999814  


Genomics

Comparative Map Data
Nbea
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82141,930,147 - 142,489,172 (-)NCBIGRCr8
mRatBN7.22139,780,021 - 140,338,639 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2139,780,021 - 140,340,584 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.02145,011,648 - 145,513,439 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02164,423,679 - 164,925,385 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42144,839,771 - 145,404,337 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2134,259,760 - 134,817,258 (-)NCBICelera
Cytogenetic Map2q26NCBI
NBEA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381334,942,270 - 35,672,736 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1334,942,270 - 35,673,022 (+)EnsemblGRCh38hg38GRCh38
GRCh371335,516,407 - 36,246,873 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361334,414,456 - 35,144,873 (+)NCBINCBI36Build 36hg18NCBI36
Build 341334,414,455 - 35,144,872NCBI
Celera1316,583,420 - 17,313,776 (+)NCBICelera
Cytogenetic Map13q13.3NCBI
HuRef1316,329,086 - 17,059,750 (+)NCBIHuRef
CHM1_11335,484,950 - 36,214,489 (+)NCBICHM1_1
T2T-CHM13v2.01334,160,609 - 34,891,073 (+)NCBIT2T-CHM13v2.0
Nbea
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39355,532,616 - 56,091,169 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl355,532,616 - 56,091,122 (-)EnsemblGRCm39 Ensembl
GRCm38355,625,195 - 56,183,748 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl355,625,195 - 56,183,701 (-)EnsemblGRCm38mm10GRCm38
MGSCv37355,429,120 - 55,987,623 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera355,330,749 - 55,888,966 (-)NCBICelera
Cytogenetic Map3CNCBI
cM Map326.61NCBI
Nbea
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543110,378,993 - 11,018,618 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543110,379,061 - 11,017,884 (-)NCBIChiLan1.0ChiLan1.0
NBEA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21434,495,627 - 35,203,450 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11325,601,374 - 26,309,378 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01316,182,613 - 16,891,082 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11334,615,370 - 35,322,521 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1334,614,820 - 35,322,521 (+)Ensemblpanpan1.1panPan2
NBEA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1254,856,748 - 5,537,040 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl254,858,115 - 5,537,025 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha254,893,838 - 5,567,788 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0254,960,388 - 5,641,588 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1254,866,933 - 5,420,020 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0254,862,602 - 5,537,355 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0254,926,906 - 5,600,915 (-)NCBIUU_Cfam_GSD_1.0
Nbea
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945166,072,458 - 166,681,142 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647229,271,555 - 29,877,946 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647229,271,036 - 29,879,698 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NBEA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1111,084,992 - 11,722,847 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11111,085,081 - 11,722,859 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21111,141,202 - 11,659,359 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NBEA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1313,557,184 - 14,276,240 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605730,018,110 - 30,772,604 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nbea
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247761,784,133 - 2,502,864 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247761,784,253 - 2,502,324 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nbea
2375 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:88
Count of miRNA genes:62
Interacting mature miRNAs:63
Transcripts:ENSRNOT00000020883, ENSRNOT00000020916, ENSRNOT00000074171
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2114837527211674221Rat
2293671Bss44Bone structure and strength QTL 4410.970.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)243162366148478373Rat
1549841Bp256Blood pressure QTL 2560.03arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2137219876142323610Rat
631566Bp90Blood pressure QTL 900.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2102803808147803808Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
6907363Bp357Blood pressure QTL 3574.10.002arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2129540907174540907Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1358360Sradr2Stress Responsive Adrenal Weight QTL 210.24adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)2129164097152195315Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
1298076Bp166Blood pressure QTL 1660.0009arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2136445150202447032Rat
1581578Cm49Cardiac mass QTL 494.90.01heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2127447387143657569Rat
12879830Bw178Body weight QTL 1780.001body mass (VT:0001259)body weight (CMO:0000012)2137219876142323610Rat
12879831Cm82Cardiac mass QTL 820.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)2137219876142323610Rat
631198Cm22Cardiac mass QTL 224.30.0008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)276539322150540526Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2114837675212549332Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)278665619219826953Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
12879832Cm83Cardiac mass QTL 830.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2137219876142323610Rat
12879833Cm84Cardiac mass QTL 840.001heart right ventricle mass (VT:0007033)heart weight to body weight ratio (CMO:0000074)2137219876142323610Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)2135552573202446871Rat
12879834Am1Aortic mass QTL 10.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)2137219876142323610Rat
12879835Kidm60Kidney mass QTL 600.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2137219876142323610Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2114837527185876470Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)256043031202447032Rat
1581502Esta3Estrogen-induced thymic atrophy QTL 3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2136916935189599348Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1582257Gluco21Glucose level QTL 213.10.0035blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2118111229157142209Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1359035Bp276Blood pressure QTL 276arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2114837527143657569Rat
8662836Vetf8Vascular elastic tissue fragility QTL 80.66thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2104559726149559726Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118275202447032Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)281689826221035911Rat
5135226Leukc2Leukocyte quantity QTL 2eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)2118111229149559726Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
2299162Iddm32Insulin dependent diabetes mellitus QTL 322.36blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)278665616143657569Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1359022Ppulsi1Prepulse inhibition QTL 13.63prepulse inhibition trait (VT:0003088)acoustic startle response measurement (CMO:0001519)2136916935213594495Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)276539322202447032Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2112456140212696837Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
7488931Bp367Blood pressure QTL 3670.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2139401804142323610Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1300165Rf9Renal function QTL 93.28kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)2133914684202447032Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2112456140212696837Rat
738007Anxrr7Anxiety related response QTL 74.4exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2118189491163189491Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607157142209Rat
1581552Pur12Proteinuria QTL 125.190.0009urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)2112103657148076632Rat
1558653Prcr1Prostate cancer resistance QTL 15prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)272532993157142209Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)281754530222436696Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246123260202447032Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607182042367Rat
1354594Despr10Despair related QTL 102e-06locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)2114654253159654253Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)274786664206665859Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243171017184114403Rat
61438Cia7Collagen induced arthritis QTL 74.60.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)259324377141596857Rat

Markers in Region
D2Rat222  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22140,253,741 - 140,253,961 (+)MAPPERmRatBN7.2
Rnor_6.02145,514,574 - 145,514,793NCBIRnor6.0
Rnor_5.02164,926,827 - 164,927,046UniSTSRnor5.0
RGSC_v3.42145,318,603 - 145,318,823RGDRGSC3.4
RGSC_v3.42145,318,604 - 145,318,823UniSTSRGSC3.4
RGSC_v3.12145,268,566 - 145,268,786RGD
Celera2134,732,947 - 134,733,162UniSTS
RH 3.4 Map2863.0RGD
RH 3.4 Map2863.0UniSTS
RH 2.0 Map2728.0RGD
SHRSP x BN Map258.2598RGD
Cytogenetic Map2q26UniSTS
D2Rat373  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22140,171,409 - 140,171,528 (+)MAPPERmRatBN7.2
Rnor_6.02145,431,818 - 145,431,936NCBIRnor6.0
Rnor_5.02164,844,071 - 164,844,189UniSTSRnor5.0
RGSC_v3.42145,236,092 - 145,236,211RGDRGSC3.4
RGSC_v3.42145,236,093 - 145,236,211UniSTSRGSC3.4
RGSC_v3.12145,185,892 - 145,186,204RGD
Celera2134,650,346 - 134,650,464UniSTS
FHH x ACI Map263.3399RGD
FHH x ACI Map263.3399UniSTS
Cytogenetic Map2q26UniSTS
T03409  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22139,780,052 - 139,780,247 (+)MAPPERmRatBN7.2
Rnor_6.02145,011,680 - 145,011,874NCBIRnor6.0
Rnor_5.02164,423,711 - 164,423,905UniSTSRnor5.0
RGSC_v3.42144,839,803 - 144,839,997UniSTSRGSC3.4
Celera2134,259,792 - 134,259,986UniSTS
Cytogenetic Map2q26UniSTS
BF394609  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22140,311,006 - 140,311,217 (+)MAPPERmRatBN7.2
Rnor_6.02147,057,935 - 147,058,145NCBIRnor6.0
Rnor_6.02145,570,626 - 145,570,836NCBIRnor6.0
Rnor_5.02166,472,388 - 166,472,598UniSTSRnor5.0
Rnor_5.02164,984,387 - 164,984,597UniSTSRnor5.0
RGSC_v3.42145,377,692 - 145,377,902UniSTSRGSC3.4
Celera2134,789,625 - 134,789,835UniSTS
RH 3.4 Map2962.7UniSTS
Cytogenetic Map2q26UniSTS
BE104314  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22140,015,744 - 140,015,904 (+)MAPPERmRatBN7.2
Rnor_6.02145,246,804 - 145,246,963NCBIRnor6.0
Rnor_5.02164,659,667 - 164,659,826UniSTSRnor5.0
RGSC_v3.42145,078,664 - 145,078,823UniSTSRGSC3.4
Celera2134,495,178 - 134,495,337UniSTS
RH 3.4 Map2863.0UniSTS
Cytogenetic Map2q26UniSTS
BE107802  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22140,051,014 - 140,051,167 (+)MAPPERmRatBN7.2
Rnor_6.02145,292,961 - 145,293,113NCBIRnor6.0
Rnor_5.02164,703,991 - 164,704,143UniSTSRnor5.0
RGSC_v3.42145,115,039 - 145,115,191UniSTSRGSC3.4
Celera2134,529,866 - 134,530,018UniSTS
RH 3.4 Map2863.3UniSTS
Cytogenetic Map2q26UniSTS
BF405211  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22139,786,028 - 139,786,214 (+)MAPPERmRatBN7.2
Rnor_6.02145,017,656 - 145,017,841NCBIRnor6.0
Rnor_5.02164,429,687 - 164,429,872UniSTSRnor5.0
RGSC_v3.42144,845,779 - 144,845,964UniSTSRGSC3.4
Celera2134,265,768 - 134,265,953UniSTS
RH 3.4 Map2861.5UniSTS
Cytogenetic Map2q26UniSTS
AW047968  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22139,945,497 - 139,945,577 (+)MAPPERmRatBN7.2
Rnor_6.02145,176,878 - 145,176,957NCBIRnor6.0
Rnor_5.02164,589,787 - 164,589,866UniSTSRnor5.0
RGSC_v3.42145,008,133 - 145,008,212UniSTSRGSC3.4
Celera2134,424,991 - 134,425,070UniSTS
Cytogenetic Map2q26UniSTS
BF415673  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22140,310,302 - 140,310,461 (+)MAPPERmRatBN7.2
Rnor_6.02147,057,231 - 147,057,389NCBIRnor6.0
Rnor_6.02145,569,922 - 145,570,080NCBIRnor6.0
Rnor_5.02166,471,684 - 166,471,842UniSTSRnor5.0
Rnor_5.02164,983,683 - 164,983,841UniSTSRnor5.0
RGSC_v3.42145,376,988 - 145,377,146UniSTSRGSC3.4
Celera2134,788,921 - 134,789,079UniSTS
RH 3.4 Map2863.4UniSTS
Cytogenetic Map2q26UniSTS
Nbea  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera2134,816,972 - 134,817,076UniSTS
Cytogenetic Map2q26UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003753593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010063625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000105525   ⟹   ENSRNOP00000093501
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2139,783,584 - 140,338,443 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000106419   ⟹   ENSRNOP00000095310
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2139,780,021 - 140,340,584 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000110270   ⟹   ENSRNOP00000089082
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2139,780,021 - 140,340,584 (-)Ensembl
RefSeq Acc Id: NM_001427608   ⟹   NP_001414537
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,930,147 - 142,489,172 (-)NCBI
RefSeq Acc Id: XM_039103975   ⟹   XP_038959903
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,930,147 - 142,488,649 (-)NCBI
mRatBN7.22139,780,021 - 140,338,573 (-)NCBI
RefSeq Acc Id: XM_039103982   ⟹   XP_038959910
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,930,147 - 142,488,649 (-)NCBI
mRatBN7.22139,780,021 - 140,338,639 (-)NCBI
RefSeq Acc Id: XM_039103983   ⟹   XP_038959911
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,930,147 - 142,488,649 (-)NCBI
mRatBN7.22139,780,021 - 140,338,639 (-)NCBI
RefSeq Acc Id: XM_063282099   ⟹   XP_063138169
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,930,147 - 142,488,649 (-)NCBI
RefSeq Acc Id: XM_063282100   ⟹   XP_063138170
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,930,147 - 142,488,649 (-)NCBI
RefSeq Acc Id: XM_063282102   ⟹   XP_063138172
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,930,147 - 142,488,649 (-)NCBI
RefSeq Acc Id: XM_063282103   ⟹   XP_063138173
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,930,147 - 142,360,385 (-)NCBI
RefSeq Acc Id: XM_063282104   ⟹   XP_063138174
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82142,235,634 - 142,488,649 (-)NCBI
RefSeq Acc Id: XR_010063625
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82142,167,673 - 142,488,649 (-)NCBI
RefSeq Acc Id: XP_038959910   ⟸   XM_039103982
- Peptide Label: isoform X5
- UniProtKB: A6JVF6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959911   ⟸   XM_039103983
- Peptide Label: isoform X4
- UniProtKB: A0A8I6AB61 (UniProtKB/TrEMBL),   A6JVF6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959903   ⟸   XM_039103975
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AK76 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000093501   ⟸   ENSRNOT00000105525
RefSeq Acc Id: ENSRNOP00000095310   ⟸   ENSRNOT00000106419
RefSeq Acc Id: ENSRNOP00000089082   ⟸   ENSRNOT00000110270
RefSeq Acc Id: NP_001414537   ⟸   NM_001427608
- UniProtKB: A6JVF6 (UniProtKB/TrEMBL),   A0A8I6AP41 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138172   ⟸   XM_063282102
- Peptide Label: isoform X6
- UniProtKB: A6JVF6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138170   ⟸   XM_063282100
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AK76 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138169   ⟸   XM_063282099
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AK76 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138173   ⟸   XM_063282103
- Peptide Label: isoform X7
- UniProtKB: A6JVF6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138174   ⟸   XM_063282104
- Peptide Label: isoform X8
Protein Domains
BEACH   BEACH-type PH

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562629 AgrOrtholog
BioCyc Gene G2FUF-53054 BioCyc
Ensembl Genes ENSRNOG00000065312 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000105525.1 UniProtKB/TrEMBL
  ENSRNOT00000106419.1 UniProtKB/TrEMBL
  ENSRNOT00000110270.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1540.10 UniProtKB/TrEMBL
  2.130.10.10 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
  2.60.120.200 UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/TrEMBL
  BEACH_dom UniProtKB/TrEMBL
  BEACH_dom_sf UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/TrEMBL
  NBCH_WD40 UniProtKB/TrEMBL
  NBEA-like_DUF1088 UniProtKB/TrEMBL
  NBEA/BDCP_DUF4704 UniProtKB/TrEMBL
  Neurobeachin_a-sol UniProtKB/TrEMBL
  PH-BEACH_dom UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene 361948 ENTREZGENE
PANTHER BEIGE/BEACH-RELATED UniProtKB/TrEMBL
  NEUROBEACHIN UniProtKB/TrEMBL
Pfam Beach UniProtKB/TrEMBL
  DUF1088 UniProtKB/TrEMBL
  DUF4704 UniProtKB/TrEMBL
  Laminin_G_3 UniProtKB/TrEMBL
  NBCH_WD40 UniProtKB/TrEMBL
  Neurobeachin UniProtKB/TrEMBL
  PH_BEACH UniProtKB/TrEMBL
PhenoGen Nbea PhenoGen
PROSITE BEACH UniProtKB/TrEMBL
  PH_BEACH UniProtKB/TrEMBL
RatGTEx ENSRNOG00000065312 RatGTEx
SMART Beach UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  SSF48371 UniProtKB/TrEMBL
  SSF49899 UniProtKB/TrEMBL
  SSF50978 UniProtKB/TrEMBL
  SSF81837 UniProtKB/TrEMBL
UniProt A0A8I6AB61 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AK76 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AP41 ENTREZGENE, UniProtKB/TrEMBL
  A6JVF6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Nbea  neurobeachin  Nbea  neurobeachin  Data merged from RGD:149736139 737654 PROVISIONAL
2021-08-09 Nbea  neurobeachin      Symbol and Name status set to provisional 45752 PROVISIONAL
2013-11-25 Nbea  neurobeachin  RGD1562629  similar to neurobeachin  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1562629  similar to neurobeachin   RGD1562629_predicted  similar to neurobeachin (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1562629_predicted  similar to neurobeachin (predicted)  LOC361948  similar to neurobeachin  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC361948  similar to neurobeachin      Symbol and Name status set to provisional 70820 PROVISIONAL