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Gene: Rab17 (RAB17, member RAS oncogene family) Rattus norvegicus

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Symbol:

Rab17

Name:

RAB17, member RAS oncogene family

RGD ID:

1562478

Description:

Predicted to enable GDP binding activity and GTPase activity. Predicted to be involved in several processes, including immunoglobulin transcytosis in epithelial cells mediated by polymeric immunoglobulin receptor; plasma membrane bounded cell projection assembly; and regulation of plasma membrane bounded cell projection organization. Predicted to be located in several cellular components, including apical plasma membrane; basolateral plasma membrane; and cytoplasmic vesicle. Predicted to be active in several cellular components, including endosome; glutamatergic synapse; and postsynapse. Orthologous to human RAB17 (RAB17, member RAS oncogene family); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acetamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC503269; ras-related protein Rab-17; RGD1562478; similar to RAB17, member RAS oncogene family

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	99,001,044 - 99,014,340 (-)	NCBI		GRCr8
mRatBN7.2	9	91,552,924 - 91,566,759 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	91,553,464 - 91,566,451 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	99,980,262 - 99,993,254 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	105,116,022 - 105,129,014 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	103,481,328 - 103,494,316 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	98,118,907 - 98,131,883 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	98,118,908 - 98,131,883 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	97,800,064 - 97,813,040 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	90,159,592 - 90,198,282 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	9	89,097,774 - 89,109,527 (-)	NCBI		Celera
Cytogenetic Map	9	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Bethlem Myopathy 1A (ISO)

chromosome 2q37 deletion syndrome (ISO)

D-2-hydroxyglutaric aciduria 1 (ISO)

hereditary spastic paraplegia 30 (ISO)

intellectual disability (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

aflatoxin B1 (ISO)

amitrole (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsenous acid (ISO)

benzene (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

buspirone (EXP)

calcitriol (ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlordecone (ISO)

chromium(6+) (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

DDE (ISO)

decabromodiphenyl ether (EXP)

diarsenic trioxide (ISO)

dicrotophos (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

entinostat (ISO)

etoposide (ISO)

fenthion (ISO)

finasteride (EXP)

flutamide (EXP)

gentamycin (EXP)

lead diacetate (ISO)

mercury dibromide (ISO)

methimazole (EXP)

mitomycin C (ISO)

okadaic acid (ISO)

p-chloromercuribenzoic acid (ISO)

panobinostat (ISO)

paracetamol (ISO)

phenobarbital (EXP)

phenylmercury acetate (ISO)

propiconazole (ISO)

rotenone (EXP)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

tanespimycin (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

thiram (ISO)

trichloroethene (EXP)

tris(2-butoxyethyl) phosphate (ISO)

valproic acid (ISO)

vinclozolin (EXP)

XL147 (ISO)

zidovudine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

anterograde dendritic transport (IEA,ISO)

cilium assembly (IEA,ISO)

endocytic recycling (IBA,IEA,ISO)

endocytosis (ISO)

establishment of melanosome localization (IEA,ISO)

filopodium assembly (IEA,ISO)

immunoglobulin transcytosis in epithelial cells mediated by polymeric immunoglobulin receptor (IEA,ISO)

intracellular protein transport (IBA)

melanosome transport (IEA,ISO)

regulation of dendrite development (IEA,ISO)

regulation of filopodium assembly (IEA,ISO)

regulation of synapse assembly (IEA,ISO)

transcytosis (IEA,ISO)

Cellular Component

apical plasma membrane (IEA,ISO)

basolateral plasma membrane (IEA,ISO)

dendrite (IEA,ISO)

dendrite cytoplasm (IEA)

early endosome (IBA,ISO)

endocytic vesicle (IEA,ISO)

endomembrane system (IBA)

glutamatergic synapse (IEA,ISO)

melanosome (IEA,ISO)

neuronal cell body (IEA,ISO)

plasma membrane (IBA)

postsynapse (IEA,ISO)

recycling endosome (IEA,ISO)

recycling endosome membrane (IBA,IEA,ISO)

synaptic vesicle membrane (IEA)

Molecular Function

GDP binding (IEA,ISO)

GTP binding (IEA)

GTPase activity (IBA,IEA,ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8486736	PMID:9490718	PMID:9624171	PMID:12477932	PMID:17646400	PMID:19056867	PMID:20937701	PMID:21291502	PMID:22291024	PMID:24895134	PMID:30256711

Genomics

Comparative Map Data

Rab17
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	99,001,044 - 99,014,340 (-)	NCBI		GRCr8
mRatBN7.2	9	91,552,924 - 91,566,759 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	91,553,464 - 91,566,451 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	99,980,262 - 99,993,254 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	105,116,022 - 105,129,014 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	103,481,328 - 103,494,316 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	98,118,907 - 98,131,883 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	98,118,908 - 98,131,883 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	97,800,064 - 97,813,040 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	90,159,592 - 90,198,282 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	9	89,097,774 - 89,109,527 (-)	NCBI		Celera
Cytogenetic Map	9	q36	NCBI

RAB17
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	237,574,326 - 237,590,734 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	237,574,322 - 237,601,614 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	238,482,969 - 238,499,377 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	238,147,704 - 238,177,653 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	238,264,964 - 238,281,736	NCBI
Celera	2	232,196,815 - 232,213,528 (-)	NCBI		Celera
Cytogenetic Map	2	q37.3	NCBI
HuRef	2	230,273,094 - 230,289,898 (-)	NCBI		HuRef
CHM1_1	2	238,488,032 - 238,504,837 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	238,064,233 - 238,091,618 (-)	NCBI		T2T-CHM13v2.0

Rab17
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	90,885,855 - 90,897,395 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	90,885,855 - 90,897,383 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	90,958,133 - 90,969,673 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	90,958,133 - 90,969,661 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	92,854,710 - 92,866,197 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	92,788,541 - 92,800,026 (-)	NCBI		MGSCv36	mm8
Celera	1	93,903,499 - 93,914,395 (-)	NCBI		Celera
Cytogenetic Map	1	D	NCBI
cM Map	1	45.84	NCBI

Rab17
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955542	2,751,953 - 2,759,661 (+)	NCBI	ChiLan1.0	ChiLan1.0

RAB17
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	140,202,994 - 140,229,285 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	140,216,354 - 140,242,919 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	124,802,789 - 124,820,775 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	243,654,176 - 243,671,003 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	243,654,176 - 243,671,003 (-)	Ensembl	panpan1.1		panPan2

RAB17
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	48,181,557 - 48,220,729 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	48,188,085 - 48,203,149 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	48,678,331 - 48,717,616 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	48,566,563 - 48,606,048 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	48,573,948 - 48,588,458 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	48,442,454 - 48,482,046 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	48,230,979 - 48,270,251 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	48,462,757 - 48,502,042 (-)	NCBI		UU_Cfam_GSD_1.0

Rab17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	190,174,049 - 190,221,710 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936525	748,600 - 765,642 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936525	748,851 - 765,636 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RAB17
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	137,235,936 - 137,261,057 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	137,232,781 - 137,255,884 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	151,631,277 - 151,635,621 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RAB17
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	123,579,771 - 123,603,355 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	123,580,621 - 123,594,374 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	75,803,128 - 75,824,757 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in Rab17
98 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	385
Count of miRNA genes:	221
Interacting mature miRNAs:	245
Transcripts:	ENSRNOT00000026918
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631656	Bp108	Blood pressure QTL 108	5.97	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	48598251	93598251	Rat
8662828	Vetf6	Vascular elastic tissue fragility QTL 6	3.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	9	36962359	92058970	Rat
724515	Uae16	Urinary albumin excretion QTL 16	8		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	58163035	100929646	Rat
731171	Glom6	Glomerulus QTL 6	2.8	0.0003	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	9	64573531	109573531	Rat
724547	Cm21	Cardiac mass QTL 21	2.7		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	9	79271511	102910209	Rat
61385	Edpm9	Estrogen-dependent pituitary mass QTL 9	3.43	0.05	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	9	63869687	108869687	Rat
2303178	Bp334	Blood pressure QTL 334	3.7	0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	79271511	91616855	Rat
724544	Uae9	Urinary albumin excretion QTL 9	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	9	25268044	114175309	Rat
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	36962359	95410867	Rat
1578760	Cm53	Cardiac mass QTL 53	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	56771635	101771635	Rat
1581580	Uae34	Urinary albumin excretion QTL 34			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	62072275	96470995	Rat
1300134	Bp185	Blood pressure QTL 185	3.73		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	61381434	104821652	Rat
1354626	Bvd1	Brain ventricular dilatation QTL 1	3.73	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	9	75712843	111552878	Rat
4889852	Pur26	Proteinuria QTL 26	15	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	77813894	101597663	Rat
7794784	Mcs31	Mammary carcinoma susceptibility QTL 31	2.98		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	9	77813894	111552878	Rat
731164	Uae25	Urinary albumin excretion QTL 25	3.5	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	25661188	100929786	Rat
1578757	Pur6	Proteinuria QTL 6	3.3	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	62072275	96470995	Rat
4889943	Bss90	Bone structure and strength QTL 90	4.1		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	9	86369631	92058970	Rat

Markers in Region

RH132977

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	91,553,531 - 91,553,719 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	98,118,976 - 98,119,163	NCBI	Rnor6.0
Rnor_5.0	9	97,800,133 - 97,800,320	UniSTS	Rnor5.0
RGSC_v3.4	9	90,159,661 - 90,159,848	UniSTS	RGSC3.4
Celera	9	89,097,843 - 89,098,030	UniSTS
Cytogenetic Map	9	q36	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	4	24	33	85	89	59	22	59	6	176	59	18	45	52	30

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109363	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039084134	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039084135	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC167022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473997	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000079446 ⟹ ENSRNOP00000068669

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	91,553,464 - 91,566,451 (-)	Ensembl
Rnor_6.0 Ensembl	9	98,118,908 - 98,131,883 (-)	Ensembl

RefSeq Acc Id:

NM_001109363 ⟹ NP_001102833

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	99,001,044 - 99,014,032 (-)	NCBI
mRatBN7.2	9	91,553,463 - 91,566,451 (-)	NCBI
Rnor_6.0	9	98,118,907 - 98,131,883 (-)	NCBI
Rnor_5.0	9	97,800,064 - 97,813,040 (-)	NCBI
RGSC_v3.4	9	90,159,592 - 90,198,282 (-)	RGD
Celera	9	89,097,774 - 89,109,527 (-)	RGD

Sequence:

show sequence

AGGGGGCCTGCCCACTTCCTTTGCTGGGCTGCTGGTGGTCAGTGTGCACGGCTCCTCCCGCCCT
GCCCCTGGCAGGACTCTGACCACTCATCCAGCACCCAGGAGAAGCCTAGCCAGGGGAAGAAAGG
GGAGCCAGCGGCCCTGTGGGATGATGGTCTGTGGAACTTTTTCAAAGTGAACAGGCCATGGCAC
AGGCTGGCGGGCTGCCACAGGCCAGCCCTTCTTCTGGCCAGCCCTACGTGAGCAAGCTGGTTCT
GCTTGGAAGCAGTTCTGTGGGCAAGACCAGCCTGGCCCTCCGGTACATGAAGCAGGACTTCAGC
AACGTCTTGCCAACTGTGGGGTGTGCCTTCTTCACAAAGGTGGTGGACTTGGGTTCCTCGTCTC
TGAAGCTTGAGATCTGGGACACAGCCGGCCAGGAGAAGTACCACAGCGTCTGCCACCTCTACTT
CCGGGGTGCTAATGCTGCGCTCCTGGTTTATGACATCACTAGGAAGGATTCCTTTCACAAGGCC
CAGCAGTGGCTGGAGGACCTGGAGAAGGAGTTCCATCCAGGAGAGGTGGTGGTGATGCTGGTCG
GCAACAAAACGGATCTCGGCGAGGAGCGGGAAGTGACCTTCCAGGAAGGAAAAGAGTTTGCGGA
GAGCAAAAGCCTGCTGTTCATGGAATCCTCTGCCAAGCTGAACTACCAGGTATCCGAGATCTTC
AACACCATTGCCCAGGAGCTGCTACAGAGAGCAGGAGATGGGCAGAGCAGCAGCCCACAGGAGG
GTGAGGCTGTGGTTCTGAACCAGGGACCTACAGTCAGGCCGCGCCAGTGCTGTGCATGACAGCC
GCTGCCACTGCAGGAGAGCGAGTGGAGGATAGCTCAGCCTGTGCTTCCGAGGGTCCCCAGCCCA
AGCTACATCTTCAAGAGTCTGCTGGCTCTTTGTCCATTCATGTTCTCTGTCGAAGATGGCTTGT
GGGTGAGCTCTGGAGGCTACCAGAAGTTGCTTTCCTTTGTAATAACCGCTTGCCAAAGCTGATG
GGAACTGTCTCAGGGAGGATCCAGTGTCAAGTGGCTTCCAGAAGACTGTCAGCCCTACCTTACC
AGATACACAGATACCTGAATGCTCTGAGCCAAGTGTGCCTGCCCCGCCTGGGCTGTCCCTTTCA
GCTTCTTTACAGCCATCGCAGAAGAATTAAAGGAAGCAGAGCGGTGTGGACTGGAACAATTCTT
TGATCCATGGAATAGGACGACAGATGCTTCATCCCGGGTCAGCTGGTCCGTAATGACACCACTT
TCGTTCTGGGAACTGTCAGGGGAAGAGAAGGGACATCAATGCAAGGAAAAATGTAGAGATGAGC
CAAGGAAAAAATGAGCCCAAGGTACTAAGTCTCAGTGAGGTGGCGCTGGAGACAGAGTCTGGAA
GGGTGGCTGGGATGGATGGTCCTTTCCATCTGTGGCTGGGCAGAGCCAGGTTTCTCTCTCGTGA
TTCGAGGACTCTGAAACCCCTGTCCTGAGATCAACACCGGGCTGTCTCACCTTCTCTCCAAATA
TTAAATGTCTTGACAATCTGAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039084134 ⟹ XP_038940062

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	99,001,044 - 99,014,340 (-)	NCBI
mRatBN7.2	9	91,552,924 - 91,566,759 (-)	NCBI

RefSeq Acc Id:

XM_039084135 ⟹ XP_038940063

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	99,001,044 - 99,014,340 (-)	NCBI
mRatBN7.2	9	91,552,924 - 91,566,759 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102833	(Get FASTA)	NCBI Sequence Viewer
	XP_038940062	(Get FASTA)	NCBI Sequence Viewer
	XP_038940063	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI67022	(Get FASTA)	NCBI Sequence Viewer
	EDL92051	(Get FASTA)	NCBI Sequence Viewer
	EDL92052	(Get FASTA)	NCBI Sequence Viewer
	EDL92053	(Get FASTA)	NCBI Sequence Viewer
	EDL92054	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000068669
	ENSRNOP00000068669.2

RefSeq Acc Id:

NP_001102833 ⟸ NM_001109363

- UniProtKB:

B2RZ46 (UniProtKB/TrEMBL), A0A0G2JTD9 (UniProtKB/TrEMBL), A0A9K3Y7P9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAQAGGLPQASPSSGQPYVSKLVLLGSSSVGKTSLALRYMKQDFSNVLPTVGCAFFTKVVDLGS
SSLKLEIWDTAGQEKYHSVCHLYFRGANAALLVYDITRKDSFHKAQQWLEDLEKEFHPGEVVVM
LVGNKTDLGEEREVTFQEGKEFAESKSLLFMESSAKLNYQVSEIFNTIAQELLQRAGDGQSSSP
QEGEAVVLNQGPTVRPRQCCA

hide sequence

Ensembl Acc Id:

ENSRNOP00000068669 ⟸ ENSRNOT00000079446

RefSeq Acc Id:	XP_038940062 ⟸ XM_039084134
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JTD9 (UniProtKB/TrEMBL), B2RZ46 (UniProtKB/TrEMBL), A0A9K3Y7P9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038940063 ⟸ XM_039084135
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JTD9 (UniProtKB/TrEMBL), B2RZ46 (UniProtKB/TrEMBL), A0A9K3Y7P9 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2JTD9-F1-model_v2	AlphaFold	A0A0G2JTD9	1-212	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696852

Promoter ID:

EPDNEW_R7377

Type:

single initiation site

Name:

Rab17_1

Description:

RAB17, member RAS oncogene family

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	98,131,866 - 98,131,926	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1562478	AgrOrtholog
BioCyc Gene	G2FUF-26731	BioCyc
Ensembl Genes	ENSRNOG00000052979	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000079446	ENTREZGENE
	ENSRNOT00000079446.2	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.300	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7126868	IMAGE-MGC_LOAD
InterPro	P-loop_NTPase	UniProtKB/TrEMBL
	Rab_GTPases_membrane_traffic	UniProtKB/TrEMBL
	Small_GTP-bd_dom	UniProtKB/TrEMBL
	Small_GTPase	UniProtKB/TrEMBL
KEGG Report	rno:503269	UniProtKB/TrEMBL
MGC_CLONE	MGC:189241	IMAGE-MGC_LOAD
NCBI Gene	503269	ENTREZGENE
PANTHER	DRAB11-RELATED	UniProtKB/TrEMBL
Pfam	Ras	UniProtKB/TrEMBL
PhenoGen	Rab17	PhenoGen
PRINTS	RASTRNSFRMNG	UniProtKB/TrEMBL
PROSITE	RAB	UniProtKB/TrEMBL
	RAS	UniProtKB/TrEMBL
	RHO	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000052979	RatGTEx
SMART	RAB	UniProtKB/TrEMBL
	RAN	UniProtKB/TrEMBL
	RAS	UniProtKB/TrEMBL
	RHO	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	A0A0G2JTD9	ENTREZGENE
	A0A9K3Y7P9	ENTREZGENE, UniProtKB/TrEMBL
	B2RZ46	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	A0A0G2JTD9	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-29	Rab17	RAB17, member RAS oncogene family	RGD1562478_predicted	similar to RAB17, member RAS oncogene family (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1562478_predicted	similar to RAB17, member RAS oncogene family (predicted)	LOC503269	similar to RAB17, member RAS oncogene family	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC503269	similar to RAB17, member RAS oncogene family			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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