Hydin (Hydin, axonemal central pair apparatus protein) - Rat Genome Database

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Gene: Hydin (Hydin, axonemal central pair apparatus protein) Rattus norvegicus
Analyze
Symbol: Hydin
Name: Hydin, axonemal central pair apparatus protein
RGD ID: 1562254
Description: Predicted to be involved in axonemal central apparatus assembly and cilium movement. Predicted to act upstream of or within epithelial cell development; trachea development; and ventricular system development. Predicted to be located in axonemal central pair projection. Predicted to be active in axoneme. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 5. Orthologous to human HYDIN (HYDIN axonemal central pair apparatus protein); INTERACTS WITH 6-propyl-2-thiouracil; acrylamide; atrazine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hydrocephalus inducing; hydrocephalus-inducing protein; hydrocephalus-inducing protein homolog; LOC292017
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81955,146,382 - 55,492,660 (+)NCBIGRCr8
mRatBN7.21938,236,996 - 38,583,271 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1938,236,464 - 38,583,264 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01941,036,507 - 41,379,634 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1941,036,510 - 41,379,588 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01951,863,272 - 52,206,125 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41940,183,008 - 40,531,091 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1937,632,923 - 37,978,530 (+)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Congenital hydrocephalus in hy3 mice is caused by a frameshift mutation in Hydin, a large novel gene. Davy BE and Robinson ML, Hum Mol Genet 2003 May 15;12(10):1163-70.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:4732188   PMID:4784576   PMID:18250199   PMID:26234751   PMID:29891944  


Genomics

Comparative Map Data
Hydin
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81955,146,382 - 55,492,660 (+)NCBIGRCr8
mRatBN7.21938,236,996 - 38,583,271 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1938,236,464 - 38,583,264 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01941,036,507 - 41,379,634 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1941,036,510 - 41,379,588 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01951,863,272 - 52,206,125 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41940,183,008 - 40,531,091 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1937,632,923 - 37,978,530 (+)NCBICelera
Cytogenetic Map19q12NCBI
HYDIN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381670,802,084 - 71,230,722 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1670,802,084 - 71,230,722 (-)EnsemblGRCh38hg38GRCh38
GRCh371670,835,987 - 71,264,625 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361669,398,790 - 69,822,070 (-)NCBINCBI36Build 36hg18NCBI36
Build 341669,618,511 - 69,822,070NCBI
Celera1655,520,311 - 55,575,377 (-)NCBICelera
Celera1654,678,628 - 54,681,256 (+)NCBICelera
Cytogenetic Map16q22.2NCBI
HuRef1656,731,920 - 56,737,384 (-)NCBIHuRef
HuRef1656,741,351 - 56,744,315 (-)NCBIHuRef
HuRef1656,754,507 - 56,755,119 (-)NCBIHuRef
HuRef1656,779,668 - 56,785,043 (-)NCBIHuRef
HuRef1656,803,982 - 56,812,392 (-)NCBIHuRef
HuRef1656,814,587 - 56,818,523 (-)NCBIHuRef
HuRef1656,726,220 - 56,729,834 (-)NCBIHuRef
HuRef1656,715,138 - 56,723,192 (-)NCBIHuRef
HuRef1656,821,215 - 56,821,805 (-)NCBIHuRef
HuRef1656,909,274 - 57,028,134 (-)NCBIHuRef
HuRef1656,839,105 - 56,841,261 (-)NCBIHuRef
HuRef1656,898,505 - 56,904,146 (-)NCBIHuRef
HuRef1656,672,780 - 56,695,211 (-)NCBIHuRef
HuRef1656,788,809 - 56,798,331 (-)NCBIHuRef
HuRef1656,764,478 - 56,767,061 (-)NCBIHuRef
HuRef1656,709,524 - 56,710,463 (-)NCBIHuRef
HuRef1656,848,912 - 56,849,419 (-)NCBIHuRef
HuRef1656,876,513 - 56,883,862 (-)NCBIHuRef
HuRef1656,698,004 - 56,700,908 (-)NCBIHuRef
HuRef1656,701,719 - 56,707,739 (-)NCBIHuRef
CHM1_11672,248,642 - 72,671,970 (-)NCBICHM1_1
T2T-CHM13v2.01676,613,256 - 77,041,852 (-)NCBIT2T-CHM13v2.0
Hydin
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398110,993,600 - 111,336,885 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8110,993,609 - 111,336,885 (+)EnsemblGRCm39 Ensembl
GRCm388110,266,968 - 110,610,253 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8110,266,977 - 110,610,253 (+)EnsemblGRCm38mm10GRCm38
MGSCv378112,790,877 - 113,134,153 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368113,156,106 - 113,496,930 (+)NCBIMGSCv36mm8
Celera8114,490,763 - 114,833,962 (+)NCBICelera
Cytogenetic Map8D3- E1NCBI
cM Map857.5NCBI
Hydin
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554843,567,396 - 3,949,261 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554843,567,896 - 3,948,807 (-)NCBIChiLan1.0ChiLan1.0
HYDIN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21882,934,280 - 83,364,209 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11688,867,898 - 89,297,812 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01653,785,727 - 54,210,088 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11670,640,355 - 71,020,197 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1670,661,924 - 71,063,631 (-)Ensemblpanpan1.1panPan2
HYDIN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1576,743,872 - 77,104,888 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl576,743,972 - 77,045,455 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha576,703,367 - 77,086,869 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0577,180,159 - 77,563,727 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl577,179,307 - 77,484,204 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1577,001,811 - 77,304,921 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0576,824,136 - 77,207,118 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0577,316,376 - 77,706,201 (-)NCBIUU_Cfam_GSD_1.0
Hydin
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934936,751,855 - 37,126,466 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493647522,523,962 - 22,836,355 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HYDIN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1613,895,276 - 14,307,790 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2613,620,710 - 13,692,896 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HYDIN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1553,950,286 - 54,435,770 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl553,950,886 - 54,335,689 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604716,762,946 - 17,189,189 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hydin
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474612,997,012 - 13,417,034 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Hydin
2492 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:33
Count of miRNA genes:30
Interacting mature miRNAs:32
Transcripts:ENSRNOT00000023117
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193383821455283146Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19745724942983518Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191082797043544039Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)191560502346559041Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19320477748204777Rat
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)1956937445569374Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19218792746708701Rat
1549835Tcas7Tongue tumor susceptibility QTL 70.001tongue integrity trait (VT:0010553)squamous cell carcinoma of the head and neck tumor number (CMO:0001876)192481797839654489Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
724565Tcas5Tongue tumor susceptibility QTL 510.04tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)19997775339654489Rat

Markers in Region
D19Wox2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21938,275,132 - 38,275,246 (-)MAPPERmRatBN7.2
Rnor_6.01941,342,523 - 41,342,636NCBIRnor6.0
Rnor_5.01952,169,692 - 52,169,805UniSTSRnor5.0
RGSC_v3.41940,191,005 - 40,191,120RGDRGSC3.4
RGSC_v3.41940,191,007 - 40,191,120UniSTSRGSC3.4
RGSC_v3.11940,195,886 - 40,196,001RGD
Celera1937,671,005 - 37,671,118UniSTS
Cytogenetic Map19q12UniSTS
RH144176  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21938,481,256 - 38,481,384 (-)MAPPERmRatBN7.2
Rnor_6.01941,138,046 - 41,138,173NCBIRnor6.0
Rnor_5.01951,964,380 - 51,964,507UniSTSRnor5.0
RGSC_v3.41940,428,325 - 40,428,452UniSTSRGSC3.4
Celera1937,877,295 - 37,877,422UniSTS
RH 3.4 Map19468.9UniSTS
Cytogenetic Map19q12UniSTS
BF402637  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21938,582,997 - 38,583,132 (-)MAPPERmRatBN7.2
Rnor_6.01941,036,642 - 41,036,776NCBIRnor6.0
Rnor_5.01951,863,407 - 51,863,541UniSTSRnor5.0
RGSC_v3.41940,530,822 - 40,530,956UniSTSRGSC3.4
Celera1937,978,261 - 37,978,395UniSTS
RH 3.4 Map19470.1UniSTS
Cytogenetic Map19q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
7 7 18 113 53 52 21 25 21 6 143 63 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC091376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC104674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000023117   ⟹   ENSRNOP00000023117
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1938,236,464 - 38,583,264 (+)Ensembl
Rnor_6.0 Ensembl1941,036,510 - 41,161,765 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000035590
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1938,236,464 - 38,347,202 (+)Ensembl
Rnor_6.0 Ensembl1941,270,320 - 41,379,588 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000059147   ⟹   ENSRNOP00000055920
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1941,167,956 - 41,349,686 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000080694   ⟹   ENSRNOP00000070230
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1938,236,464 - 38,583,264 (+)Ensembl
Rnor_6.0 Ensembl1941,036,715 - 41,349,681 (-)Ensembl
RefSeq Acc Id: NM_001427650   ⟹   NP_001414579
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81955,146,466 - 55,492,660 (+)NCBI
RefSeq Acc Id: XM_039098232   ⟹   XP_038954160
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81955,146,382 - 55,492,657 (+)NCBI
mRatBN7.21938,236,996 - 38,583,271 (+)NCBI
RefSeq Acc Id: XM_039098234   ⟹   XP_038954162
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81955,146,382 - 55,492,657 (+)NCBI
mRatBN7.21938,236,996 - 38,583,059 (+)NCBI
RefSeq Acc Id: XM_039098235   ⟹   XP_038954163
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81955,146,382 - 55,492,657 (+)NCBI
mRatBN7.21938,236,996 - 38,583,059 (+)NCBI
RefSeq Acc Id: XM_039098237   ⟹   XP_038954165
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81955,146,382 - 55,477,008 (+)NCBI
mRatBN7.21938,236,996 - 38,567,618 (+)NCBI
RefSeq Acc Id: XM_039098238   ⟹   XP_038954166
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81955,295,541 - 55,492,657 (+)NCBI
mRatBN7.21938,386,160 - 38,583,059 (+)NCBI
RefSeq Acc Id: XM_039098239   ⟹   XP_038954167
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81955,146,382 - 55,462,241 (+)NCBI
mRatBN7.21938,236,996 - 38,552,839 (+)NCBI
RefSeq Acc Id: XM_039098241   ⟹   XP_038954169
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81955,377,681 - 55,492,657 (+)NCBI
mRatBN7.21938,468,277 - 38,583,059 (+)NCBI
RefSeq Acc Id: XM_063277932   ⟹   XP_063134002
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81955,377,681 - 55,492,657 (+)NCBI
RefSeq Acc Id: XM_063277933   ⟹   XP_063134003
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81955,146,382 - 55,390,868 (+)NCBI
RefSeq Acc Id: XM_063277934   ⟹   XP_063134004
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81955,146,382 - 55,390,868 (+)NCBI
RefSeq Acc Id: XM_063277935   ⟹   XP_063134005
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81955,146,382 - 55,374,918 (+)NCBI
Ensembl Acc Id: ENSRNOP00000070230   ⟸   ENSRNOT00000080694
Ensembl Acc Id: ENSRNOP00000055920   ⟸   ENSRNOT00000059147
Ensembl Acc Id: ENSRNOP00000023117   ⟸   ENSRNOT00000023117
RefSeq Acc Id: XP_038954160   ⟸   XM_039098232
- Peptide Label: isoform X1
- UniProtKB: F1LSN6 (UniProtKB/TrEMBL),   A0A0G2JXD6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954163   ⟸   XM_039098235
- Peptide Label: isoform X3
- UniProtKB: A0A0G2JXD6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954162   ⟸   XM_039098234
- Peptide Label: isoform X2
- UniProtKB: A0A0G2JXD6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954165   ⟸   XM_039098237
- Peptide Label: isoform X4
- UniProtKB: A0A0G2JXD6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954167   ⟸   XM_039098239
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038954166   ⟸   XM_039098238
- Peptide Label: isoform X5
- UniProtKB: A0A0G2JXD6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954169   ⟸   XM_039098241
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063134003   ⟸   XM_063277933
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063134004   ⟸   XM_063277934
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063134005   ⟸   XM_063277935
- Peptide Label: isoform X11
RefSeq Acc Id: NP_001414579   ⟸   NM_001427650
RefSeq Acc Id: XP_063134002   ⟸   XM_063277932
- Peptide Label: isoform X8
Protein Domains
Hydin adenylate kinase-like   HYDIN/VesB/CFA65-like Ig-like

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701139
Promoter ID:EPDNEW_R11651
Type:multiple initiation site
Name:Hydin_1
Description:Hydin, axonemal central pair apparatus protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01941,379,598 - 41,379,658EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562254 AgrOrtholog
BioCyc Gene G2FUF-5691 BioCyc
Ensembl Genes ENSRNOG00000017178 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000023117.7 UniProtKB/TrEMBL
  ENSRNOT00000035590.7 UniProtKB/TrEMBL
  ENSRNOT00000080694.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7304622 IMAGE-MGC_LOAD
  IMAGE:7320438 IMAGE-MGC_LOAD
InterPro Hydin UniProtKB/TrEMBL
  Hydin_ADK UniProtKB/TrEMBL
  HYDIN_VesB_CFA65-like_Ig UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  PapD-like UniProtKB/TrEMBL
MGC_CLONE MGC:109450 IMAGE-MGC_LOAD
  MGC:125125 IMAGE-MGC_LOAD
NCBI Gene 292017 ENTREZGENE
PANTHER HYDROCEPHALUS-INDUCING PROTEIN HOMOLOG UniProtKB/TrEMBL
  PTHR23053 UniProtKB/TrEMBL
Pfam Hydin_ADK UniProtKB/TrEMBL
  HYDIN_VesB_CFA65-like_Ig UniProtKB/TrEMBL
  PapD-like UniProtKB/TrEMBL
PhenoGen Hydin PhenoGen
RatGTEx ENSRNOG00000017178 RatGTEx
Superfamily-SCOP SSF49354 UniProtKB/TrEMBL
UniProt A0A0G2JXD6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZVT5_RAT UniProtKB/TrEMBL
  F1LSN6 ENTREZGENE, UniProtKB/TrEMBL
  Q3MHU4_RAT UniProtKB/TrEMBL
  Q5BJQ9_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-01-12 Hydin  Hydin, axonemal central pair apparatus protein  Hydin  hydrocephalus inducing  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Hydin  hydrocephalus inducing  LOC292017  hydrocephalus-inducing protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 LOC292017  hydrocephalus-inducing protein      Symbol and Name status set to provisional 70820 PROVISIONAL