St6galnac1 (ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1) - Rat Genome Database

Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Projects (beta) QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap)  (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: St6galnac1 (ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1) Rattus norvegicus
Analyze
Symbol: St6galnac1
Name: ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1
RGD ID: 1562048
Description: Predicted to enable alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity. Predicted to be involved in host-mediated regulation of intestinal microbiota composition; oligosaccharide biosynthetic process; and protein glycosylation. Predicted to be active in Golgi membrane. Orthologous to human ST6GALNAC1 (ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1); PARTICIPATES IN O-linked glycan biosynthetic pathway; INTERACTS WITH atrazine; bisphenol A; trichloroethene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: alpha-2,6-sialyltransferase ST6GalNAc I; alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1; sialyltransferase 7 ((alpha-N-acetylneuraminyl 2,3-beta-galactosyl-1,3)-N-acetyl galactosaminde alpha-2,6-sialyltransferase) A; Siat7A; ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1; ST6 GalNAc alpha-2,6-sialyltransferase 1; ST6GALNAC1, alpha-2,6-sialyltransferase 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.210101,972,656 - 101,983,053 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10101,972,668 - 101,983,053 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10107,079,707 - 107,090,110 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010106,542,789 - 106,553,192 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010101,893,516 - 101,903,911 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010105,713,305 - 105,723,700 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10105,713,317 - 105,723,700 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010105,374,445 - 105,384,844 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410106,837,311 - 106,881,619 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera10100,544,188 - 100,554,583 (-)NCBICelera
Cytogenetic Map10q32.2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10788794   PMID:15843597   PMID:30854566  


Genomics

Comparative Map Data
St6galnac1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.210101,972,656 - 101,983,053 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10101,972,668 - 101,983,053 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10107,079,707 - 107,090,110 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010106,542,789 - 106,553,192 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010101,893,516 - 101,903,911 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010105,713,305 - 105,723,700 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10105,713,317 - 105,723,700 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010105,374,445 - 105,384,844 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410106,837,311 - 106,881,619 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera10100,544,188 - 100,554,583 (-)NCBICelera
Cytogenetic Map10q32.2NCBI
ST6GALNAC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381776,617,407 - 76,643,757 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1776,624,761 - 76,643,786 (-)EnsemblGRCh38hg38GRCh38
GRCh371774,620,845 - 74,639,839 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361772,132,440 - 72,151,489 (-)NCBINCBI36Build 36hg18NCBI36
Build 341772,132,441 - 72,151,327NCBI
Celera1771,213,224 - 71,232,267 (-)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1770,048,336 - 70,067,435 (-)NCBIHuRef
CHM1_11774,685,839 - 74,704,894 (-)NCBICHM1_1
T2T-CHM13v2.01777,513,932 - 77,540,529 (-)NCBIT2T-CHM13v2.0
St6galnac1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911116,655,851 - 116,666,333 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11116,655,851 - 116,666,333 (-)EnsemblGRCm39 Ensembl
GRCm3811116,765,025 - 116,775,507 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11116,765,025 - 116,775,507 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711116,626,339 - 116,636,821 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611116,581,115 - 116,591,597 (-)NCBIMGSCv36mm8
Celera11128,478,824 - 128,520,872 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1181.49NCBI
St6galnac1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555065,656,176 - 5,677,614 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555065,656,182 - 5,677,596 (+)NCBIChiLan1.0ChiLan1.0
ST6GALNAC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan11797,493,720 - 97,519,466 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01770,705,223 - 70,721,046 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11776,263,305 - 76,288,115 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1776,263,877 - 76,287,941 (-)Ensemblpanpan1.1panPan2
ST6GALNAC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.194,098,881 - 4,124,417 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl94,101,050 - 4,123,896 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha94,782,442 - 4,805,244 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.094,774,895 - 4,800,385 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl94,777,043 - 4,800,178 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.194,802,574 - 4,825,137 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.094,922,238 - 4,945,012 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.095,003,369 - 5,026,130 (+)NCBIUU_Cfam_GSD_1.0
St6galnac1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056024,698,944 - 4,721,193 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365941,690,769 - 1,711,982 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049365941,690,799 - 1,711,940 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ST6GALNAC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl124,890,406 - 4,909,351 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1124,889,852 - 4,909,345 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2124,742,080 - 4,760,387 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ST6GALNAC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11645,020,465 - 45,057,403 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1645,038,943 - 45,057,615 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607715,778,125 - 15,797,400 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
St6galnac1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248016,478,910 - 6,499,959 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248016,478,153 - 6,500,047 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in St6galnac1
424 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:87
Count of miRNA genes:77
Interacting mature miRNAs:81
Transcripts:ENSRNOT00000042321
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040035094102359817Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1051770177107211142Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1051770177107211142Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1053797385107211142Rat
2312662Slep8Serum leptin concentration QTL 80.05blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1057134272102134272Rat
2312668Scl65Serum cholesterol level QTL 650.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1057134272102134272Rat
2312672Insul15Insulin level QTL 150.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1057134272102134272Rat
1549831Bss6Bone structure and strength QTL 64lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)1057576521102576521Rat
2293698Bss43Bone structure and strength QTL 435.330.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1059209888104209888Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1062057807107057807Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1062057807107057807Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063221094107211142Rat
2317029Aia19Adjuvant induced arthritis QTL 192.98joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1066978955107211142Rat
2317039Aia6Adjuvant induced arthritis QTL 64.31joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)1066978955107211142Rat
10450498Bp384Blood pressure QTL 3840.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1067750049107211142Rat
1642980Bp300Blood pressure QTL 300arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068383129107211142Rat
61396Bp9Blood pressure QTL 94.80.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068420376107211142Rat
2300172Bmd57Bone mineral density QTL 579.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1069738412107211142Rat
2293646Bss25Bone structure and strength QTL 2510.960.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1069738412107211142Rat
2293663Bss33Bone structure and strength QTL 339.340.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1069738412107211142Rat
6893366Bw106Body weight QTL 1060.30.47body mass (VT:0001259)body weight (CMO:0000012)1070199100107211142Rat
70193Mcs7Mammary carcinoma susceptibility QTL 72.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072224939107211142Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1072224939107211142Rat
2292438Bp311Blood pressure QTL 311arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1076246085107211142Rat
1302404Cia27Collagen induced arthritis QTL 272.60.0045joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)1076452683107211142Rat
4889492Pancm2Pancreatic morphology QTL 23.2pancreatic beta cell morphology trait (VT:0005217)ratio of insulin-positive cell area to total area of splenic region of pancreas (CMO:0001814)1076748906107211142Rat
2303589Bw87Body weight QTL 872body mass (VT:0001259)body weight (CMO:0000012)1081285008107211142Rat
2317754Glom25Glomerulus QTL 253.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)1082685200107211142Rat
1600367Mcs15Mammary carcinoma susceptibility QTL 154.5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1085565469103884409Rat
631538Oia5Oil induced arthritis QTL 5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1087055121107211142Rat
61363Oia3Oil induced arthritis QTL 30.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1087307617107211142Rat
634320Niddm49Non-insulin dependent diabetes mellitus QTL 494.41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1088539139107211142Rat
12880395Cm109Cardiac mass QTL 1090.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)1090404397107211142Rat
12880396Am13Aortic mass QTL 130.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1090404397107211142Rat
12880398Kidm67Kidney mass QTL 670.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1090404397107211142Rat
12880384Cm107Cardiac mass QTL 1070.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)90404397107211142Rat
12880385Cm108Cardiac mass QTL 1080.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)90404397107211142Rat
1579915Bp280Blood pressure QTL 2800.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1090404397107211142Rat
1300137Bp186Blood pressure QTL 1863.57arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1090627439107057807Rat
724530Bp149Blood pressure QTL 1490.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1090627439107211142Rat
1558652Bw57Body weight QTL 574.20.0008body mass (VT:0001259)body weight (CMO:0000012)1090910316107211142Rat
61436Cia5Collagen induced arthritis QTL 54.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1091228102104060283Rat
1354641Bvd2Brain ventricular dilatation QTL 26.360.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)1093223816107057807Rat
10450493Bp382Blood pressure QTL 3820.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1094759759107211142Rat
2292436Bp310Blood pressure QTL 310arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1094759759107211142Rat
1576307Cia28Collagen induced arthritis QTL 28joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1096120911104060283Rat
1576313Pia25Pristane induced arthritis QTL 25joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1096120911104060283Rat
1578663Bss18Bone structure and strength QTL 183.6femur width (VT:1000666)femoral neck width (CMO:0001695)1096703043107057807Rat
1578672Bmd16Bone mineral density QTL 166.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)1096703043107057807Rat
631539Oia6Oil induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1097010147104670812Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system nervous system renal system reproductive system respiratory system
High
Medium 3
Low
Below cutoff 2 7 16 25 7

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000042321   ⟹   ENSRNOP00000042177
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10101,972,668 - 101,983,053 (-)Ensembl
Rnor_6.0 Ensembl10105,713,317 - 105,723,700 (-)Ensembl
RefSeq Acc Id: NM_001105859   ⟹   NP_001099329
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.210101,972,656 - 101,983,053 (-)NCBI
Rnor_6.010105,713,305 - 105,723,700 (-)NCBI
Rnor_5.010105,374,445 - 105,384,844 (-)NCBI
RGSC_v3.410106,837,311 - 106,881,619 (-)RGD
Celera10100,544,188 - 100,554,583 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001099329 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein CAG25684 (Get FASTA)   NCBI Sequence Viewer  
  EDM06692 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_001099329   ⟸   NM_001105859
- Peptide Label: precursor
- UniProtKB: G3V9C4 (UniProtKB/TrEMBL),   A6HKY7 (UniProtKB/TrEMBL),   Q6ZYN7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000042177   ⟸   ENSRNOT00000042321

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V9C4-F1-model_v2 AlphaFold G3V9C4 1-520 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562048 AgrOrtholog
BioCyc Gene G2FUF-22583 BioCyc
Ensembl Genes ENSRNOG00000000251 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000042177 ENTREZGENE
  ENSRNOP00000042177.3 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000042321 ENTREZGENE
  ENSRNOT00000042321.6 UniProtKB/TrEMBL
Gene3D-CATH 3.90.1480.20 UniProtKB/TrEMBL
InterPro Glyco_trans_29 UniProtKB/TrEMBL
  GT29-like_sf UniProtKB/TrEMBL
KEGG Report rno:287920 UniProtKB/TrEMBL
NCBI Gene 287920 ENTREZGENE
PANTHER ALPHA-N-ACETYLGALACTOSAMINIDE ALPHA-2,6-SIALYLTRANSFERASE 1 UniProtKB/TrEMBL
  PTHR45941 UniProtKB/TrEMBL
Pfam Glyco_transf_29 UniProtKB/TrEMBL
PhenoGen St6galnac1 PhenoGen
UniProt A6HKY7 ENTREZGENE, UniProtKB/TrEMBL
  G3V9C4 ENTREZGENE, UniProtKB/TrEMBL
  Q6ZYN7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-05-04 St6galnac1  ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1  St6galnac1  ST6 GalNAc alpha-2,6-sialyltransferase 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-04-27 St6galnac1  ST6 GalNAc alpha-2,6-sialyltransferase 1  St6galnac1  ST6GALNAC1, alpha-2,6-sialyltransferase 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-04-13 St6galnac1  ST6GALNAC1, alpha-2,6-sialyltransferase 1  St6galnac1  ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 St6galnac1  ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1  Siat7A  sialyltransferase 7 ((alpha-N-acetylneuraminyl 2,3-beta-galactosyl-1,3)-N-acetyl galactosaminde alpha-2,6-sialyltransferase) A  Symbol and Name updated 1299863 APPROVED
2006-02-09 Siat7A  sialyltransferase 7 ((alpha-N-acetylneuraminyl 2,3-beta-galactosyl-1,3)-N-acetyl galactosaminde alpha-2,6-sialyltransferase) A      Symbol and Name status set to provisional 70820 PROVISIONAL