Spmip6 (sperm microtubule inner protein 6) - Rat Genome Database

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Gene: Spmip6 (sperm microtubule inner protein 6) Rattus norvegicus
Analyze
Symbol: Spmip6
Name: sperm microtubule inner protein 6
RGD ID: 1561916
Description: Predicted to enable alpha-tubulin binding activity. Predicted to act upstream of or within protein-containing complex assembly. Predicted to be located in several cellular components, including mitochondrion; nucleoplasm; and sperm midpiece. Predicted to be active in axonemal A tubule inner sheath; manchette; and perinuclear region of cytoplasm. Orthologous to human SPMIP6 (sperm microtubule inner protein 6); INTERACTS WITH 4,4'-sulfonyldiphenol; 6-propyl-2-thiouracil; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC500441; RGD1561916; similar to testes development-related NYD-SP22 isoform 1; spermatid-specific manchette-related protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8561,462,070 - 61,474,832 (-)NCBIGRCr8
mRatBN7.2556,666,160 - 56,678,865 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl556,666,058 - 56,678,923 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0557,883,713 - 57,896,449 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl557,883,675 - 57,896,475 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0562,411,541 - 62,423,788 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4558,925,020 - 58,937,602 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera555,262,017 - 55,274,732 (-)NCBICelera
Cytogenetic Map5q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15242845   PMID:18163442   PMID:21630459  


Genomics

Comparative Map Data
Spmip6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8561,462,070 - 61,474,832 (-)NCBIGRCr8
mRatBN7.2556,666,160 - 56,678,865 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl556,666,058 - 56,678,923 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0557,883,713 - 57,896,449 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl557,883,675 - 57,896,475 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0562,411,541 - 62,423,788 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4558,925,020 - 58,937,602 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera555,262,017 - 55,274,732 (-)NCBICelera
Cytogenetic Map5q22NCBI
SPMIP6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38934,379,019 - 34,397,810 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl934,379,019 - 34,397,828 (-)EnsemblGRCh38hg38GRCh38
GRCh37934,379,017 - 34,397,808 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36934,369,017 - 34,387,849 (-)NCBINCBI36Build 36hg18NCBI36
Build 34934,369,016 - 34,371,598NCBI
Celera934,310,522 - 34,329,350 (-)NCBICelera
Cytogenetic Map9p13.3NCBI
HuRef934,334,107 - 34,352,947 (-)NCBIHuRef
CHM1_1934,378,781 - 34,397,638 (-)NCBICHM1_1
T2T-CHM13v2.0934,397,509 - 34,416,300 (-)NCBIT2T-CHM13v2.0
Spmip6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39441,505,005 - 41,517,333 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl441,505,009 - 41,517,333 (-)EnsemblGRCm39 Ensembl
GRCm38441,505,005 - 41,517,366 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl441,505,009 - 41,517,333 (-)EnsemblGRCm38mm10GRCm38
MGSCv37441,452,042 - 41,464,366 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36441,693,678 - 41,706,004 (-)NCBIMGSCv36mm8
Celera441,166,278 - 41,178,565 (-)NCBICelera
Cytogenetic Map4A5NCBI
cM Map421.7NCBI
Spmip6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554721,718,517 - 1,735,004 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554721,718,474 - 1,733,980 (+)NCBIChiLan1.0ChiLan1.0
SPMIP6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21190,206,242 - 90,237,751 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1990,211,988 - 90,243,691 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0934,215,298 - 34,234,358 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1935,024,088 - 35,043,323 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl935,024,088 - 35,043,323 (-)Ensemblpanpan1.1panPan2
SPMIP6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11151,078,682 - 51,092,014 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1151,078,808 - 51,091,818 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1149,708,243 - 49,721,779 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01152,020,666 - 52,034,204 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1152,020,792 - 52,033,804 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11150,683,358 - 50,696,893 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01150,551,460 - 50,564,997 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01151,316,258 - 51,329,796 (-)NCBIUU_Cfam_GSD_1.0
SPMIP6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1032,419,795 - 32,435,884 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11032,419,965 - 32,435,622 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21036,588,942 - 36,604,343 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SPMIP6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11246,215,162 - 46,234,101 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1246,215,619 - 46,234,044 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603843,331,776 - 43,350,648 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Spmip6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473638,784,128 - 38,799,912 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473638,784,071 - 38,800,097 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Spmip6
62 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:175
Count of miRNA genes:109
Interacting mature miRNAs:120
Transcripts:ENSRNOT00000017903, ENSRNOT00000068698
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53321566578215665Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)54786906290099692Rat
1578776Stresp18Stress response QTL 182.9thymus mass (VT:0004954)thymus wet weight (CMO:0000855)52795544072955440Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)51887394774251464Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512789751113558310Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)543726656129132602Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53321566578215665Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53321566578215665Rat
6903292Stl28Serum triglyceride level QTL 282.60.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)52851548973515489Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
1578767Stresp17Stress response QTL 174.30.01blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)52795544072955440Rat
7411561Bw134Body weight QTL 134240.001body mass (VT:0001259)body weight gain (CMO:0000420)54946360094463600Rat
1641922Alcrsp8Alcohol response QTL 8alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)53518915368564008Rat
2303615Vencon7Ventilatory control QTL 70.001respiration trait (VT:0001943)respiration rate (CMO:0000289)55098389595983895Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)550328551141643988Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535189153141643988Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
6903306Scl35Serum cholesterol QTL 352.60.0073blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)52851548973515489Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)534730116104251008Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5982326699753708Rat
1331773Scl26Serum cholesterol level QTL 263.065blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)54372665686724018Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555805606132207589Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)572947086724018Rat
61359EaexExperimental allergic encephalomyelitis QTL x3nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)555715622100715622Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)531663789131345958Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5228222669540447Rat
9589025Epfw7Epididymal fat weight QTL 720.660.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)54946360094463600Rat
2303574Gluco42Glucose level QTL 422blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)55349671998496719Rat
1641903Alcrsp3Alcohol response QTL 3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)51268928557689285Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5190450412Rat
8552954Pigfal14Plasma insulin-like growth factor 1 level QTL 149blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)52122674466226744Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)534944474113558310Rat
1600358Mamtr5Mammary tumor resistance QTL 5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)51887394763873947Rat

Markers in Region
D5Rat135  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2556,680,763 - 56,680,977 (+)MAPPERmRatBN7.2
Rnor_6.0557,898,316 - 57,898,529NCBIRnor6.0
Rnor_5.0562,425,521 - 62,425,734UniSTSRnor5.0
RGSC_v3.4558,939,633 - 58,939,846UniSTSRGSC3.4
RGSC_v3.4558,939,633 - 58,939,846RGDRGSC3.4
RGSC_v3.1558,939,812 - 58,940,025RGD
Celera555,276,587 - 55,276,800UniSTS
SHRSP x BN Map536.2199UniSTS
SHRSP x BN Map536.2199RGD
Cytogenetic Map5q22UniSTS
RH143751  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2556,680,697 - 56,680,859 (+)MAPPERmRatBN7.2
Rnor_6.0557,898,250 - 57,898,411NCBIRnor6.0
Rnor_5.0562,425,455 - 62,425,616UniSTSRnor5.0
RGSC_v3.4558,939,567 - 58,939,728UniSTSRGSC3.4
Celera555,276,521 - 55,276,682UniSTS
Cytogenetic Map5q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001419511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001419512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_001068622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006238116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_575803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC110488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000017903   ⟹   ENSRNOP00000017903
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl556,666,146 - 56,678,923 (-)Ensembl
Rnor_6.0 Ensembl557,883,675 - 57,896,475 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000112029   ⟹   ENSRNOP00000085022
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl556,666,058 - 56,678,923 (-)Ensembl
RefSeq Acc Id: NM_001419511   ⟹   NP_001406440
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8561,462,070 - 61,474,774 (-)NCBI
mRatBN7.2556,666,160 - 56,678,865 (-)NCBI
RefSeq Acc Id: NM_001419512   ⟹   NP_001406441
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8561,462,070 - 61,464,828 (-)NCBI
mRatBN7.2556,666,160 - 56,668,918 (-)NCBI
RefSeq Acc Id: XM_006238116   ⟹   XP_006238178
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8561,462,072 - 61,465,316 (-)NCBI
mRatBN7.2556,666,160 - 56,669,437 (-)NCBI
Rnor_6.0557,883,713 - 57,886,873 (-)NCBI
Rnor_5.0562,411,541 - 62,423,788 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017593717   ⟹   XP_017449206
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8561,462,072 - 61,466,024 (-)NCBI
mRatBN7.2556,666,160 - 56,670,008 (-)NCBI
Rnor_6.0557,883,713 - 57,887,656 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039110968   ⟹   XP_038966896
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8561,462,633 - 61,474,821 (-)NCBI
mRatBN7.2556,666,723 - 56,678,799 (-)NCBI
RefSeq Acc Id: XM_063288217   ⟹   XP_063144287
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8561,462,072 - 61,471,162 (-)NCBI
RefSeq Acc Id: XM_063288218   ⟹   XP_063144288
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8561,462,628 - 61,474,821 (-)NCBI
RefSeq Acc Id: XM_575803   ⟹   XP_575803
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8561,462,072 - 61,474,832 (-)NCBI
mRatBN7.2556,666,160 - 56,678,799 (-)NCBI
Rnor_6.0557,883,713 - 57,896,449 (-)NCBI
Rnor_5.0562,411,541 - 62,423,788 (-)NCBI
RGSC_v3.4558,925,020 - 58,937,602 (-)RGD
Sequence:
RefSeq Acc Id: XP_575803   ⟸   XM_575803
- Peptide Label: isoform X1
- UniProtKB: D4A9U1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006238178   ⟸   XM_006238116
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017449206   ⟸   XM_017593717
- Peptide Label: isoform X3
- Sequence:
Ensembl Acc Id: ENSRNOP00000017903   ⟸   ENSRNOT00000017903
RefSeq Acc Id: XP_038966896   ⟸   XM_039110968
- Peptide Label: isoform X4
- UniProtKB: A6IIV5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000085022   ⟸   ENSRNOT00000112029
RefSeq Acc Id: NP_001406440   ⟸   NM_001419511
- Peptide Label: isoform 1
RefSeq Acc Id: NP_001406441   ⟸   NM_001419512
- Peptide Label: isoform 2
- UniProtKB: A6IIV4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144287   ⟸   XM_063288217
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063144288   ⟸   XM_063288218
- Peptide Label: isoform X4

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A9U1-F1-model_v2 AlphaFold D4A9U1 1-261 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693666
Promoter ID:EPDNEW_R4177
Type:initiation region
Name:RGD1561916_1
Description:similar to testes development-related NYD-SP22 isoform 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0557,896,417 - 57,896,477EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561916 AgrOrtholog
BioCyc Gene G2FUF-41558 BioCyc
Ensembl Genes ENSRNOG00000013320 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000017903.9 UniProtKB/TrEMBL
  ENSRNOT00000112029.1 UniProtKB/TrEMBL
InterPro SMRP1 UniProtKB/TrEMBL
NCBI Gene 500441 ENTREZGENE
PANTHER PTHR35664 UniProtKB/TrEMBL
  SPERMATID-SPECIFIC MANCHETTE-RELATED PROTEIN 1 UniProtKB/TrEMBL
Pfam SMRP1 UniProtKB/TrEMBL
PhenoGen Spmip6 PhenoGen
RatGTEx ENSRNOG00000013320 RatGTEx
UniProt A0A8I5ZZ70_RAT UniProtKB/TrEMBL
  A6IIV4 ENTREZGENE, UniProtKB/TrEMBL
  A6IIV5 ENTREZGENE, UniProtKB/TrEMBL
  D4A9U1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-05-05 Spmip6  sperm microtubule inner protein 6  RGD1561916  similar to testes development-related NYD-SP22 isoform 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1561916  similar to testes development-related NYD-SP22 isoform 1   RGD1561916_predicted  similar to testes development-related NYD-SP22 isoform 1 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1561916_predicted  similar to testes development-related NYD-SP22 isoform 1 (predicted)  LOC500441  similar to testes development-related NYD-SP22 isoform 1  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC500441  similar to testes development-related NYD-SP22 isoform 1      Symbol and Name status set to provisional 70820 PROVISIONAL