Cfdp1l1 (craniofacial development protein 1 like 1) - Rat Genome Database

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Gene: Cfdp1l1 (craniofacial development protein 1 like 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Cfdp1l1 (Ensembl: AABR07063703.1)
Name: craniofacial development protein 1 like 1 (Ensembl:similar to craniofacial development protein 1)
RGD ID: 1561890
Description: Predicted to be located in kinetochore; INTERACTS WITH bisphenol A.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: craniofacial development protein 1-like; LOC313982; RGD1561890; similar to craniofacial development protein 1
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8645,983,383 - 45,984,583 (+)NCBIGRCr8
mRatBN7.2640,254,717 - 40,255,884 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl640,254,779 - 40,255,666 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0642,777,469 - 42,778,374 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0652,490,013 - 52,491,006 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4641,234,312 - 41,235,199 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera639,553,709 - 39,554,614 (+)NCBICelera
Cytogenetic Map6q16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
bisphenol A  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Cfdp1l1
2 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6141223769Rat
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6141223769Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6141223769Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6141223769Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6141223769Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6142487980Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6142487980Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6142487980Rat
7411584Foco4Food consumption QTL 44.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6142838846Rat
738024Sach5Saccharine consumption QTL 53.90.00039consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)6143394190Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)61173566972593685Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)61173566972593685Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)61653614071636405Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)62033877762613667Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63207442872227641Rat
634318Bw118Body weight QTL 1183.55abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)63330954957730294Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63330954981132889Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)63443413777102317Rat
1354632Scl29Serum cholesterol level QTL 293.74blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)63509870971636405Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63523041780230417Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)63569161857730540Rat
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)63878398983783989Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat


Expression


Sequence


RefSeq Acc Id: ENSRNOT00000075437   ⟹   ENSRNOP00000095353
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl640,254,779 - 40,255,666 (+)Ensembl
Rnor_6.0 Ensembl642,777,469 - 42,778,353 (+)Ensembl
RefSeq Acc Id: XM_039078182   ⟹   XP_038934110
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8645,983,383 - 45,984,583 (+)NCBI
mRatBN7.2640,254,735 - 40,255,884 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038934110 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000095353
  ENSRNOP00000095353.1
RefSeq Acc Id: XP_038934110   ⟸   XM_039078182
- UniProtKB: A0A8I6ATB9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000095353   ⟸   ENSRNOT00000075437
Protein Domains
BCNT-C

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-38055 BioCyc
Ensembl Genes ENSRNOG00000046279 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000075437.3 UniProtKB/TrEMBL
InterPro BCNT-C UniProtKB/TrEMBL
  Swc5/CFDP1/2 UniProtKB/TrEMBL
NCBI Gene 313982 ENTREZGENE
PANTHER CRANIOFACIAL DEVELOPMENT PROTEIN 1 UniProtKB/TrEMBL
  CRANIOFACIAL DEVELOPMENT PROTEIN 1 UniProtKB/TrEMBL
Pfam BCNT UniProtKB/TrEMBL
PhenoGen Cfdp1l1 PhenoGen
PROSITE BCNT_C UniProtKB/TrEMBL
RatGTEx ENSRNOG00000046279 RatGTEx
UniProt A0A8I6ATB9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Cfdp1l1  craniofacial development protein 1 like 1  RGD1561890  similar to craniofacial development protein 1  Symbol and Name Changed 1299863 APPROVED
2008-04-30 RGD1561890  similar to craniofacial development protein 1   RGD1561890_predicted  similar to craniofacial development protein 1 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1561890_predicted  similar to craniofacial development protein 1 (predicted)  LOC313982  similar to craniofacial development protein 1  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC313982  similar to craniofacial development protein 1      Symbol and Name status set to provisional 70820 PROVISIONAL