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Gene: Atad5 (ATPase family, AAA domain containing 5) Rattus norvegicus

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Symbol:

Atad5

Name:

ATPase family, AAA domain containing 5

RGD ID:

1561464

Description:

Predicted to enable DNA binding activity and DNA clamp unloader activity. Predicted to be involved in several processes, including negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator; positive regulation of DNA replication; and positive regulation of cell cycle G2/M phase transition. Predicted to act upstream of or within several processes, including intracellular signal transduction; negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage; and positive regulation of B cell activation. Predicted to be part of Elg1 RFC-like complex. Predicted to be active in nucleus. Orthologous to human ATAD5 (ATPase family AAA domain containing 5); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; amphetamine; bisphenol A.

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

ATPase family AAA domain-containing protein 5; LOC303348; RGD1561464; similar to novel protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ATAD5 (ATPase family AAA domain containing 5)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Atad5 (ATPase family, AAA domain containing 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Atad5 (ATPase family AAA domain containing 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ATAD5 (ATPase family AAA domain containing 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ATAD5 (ATPase family AAA domain containing 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Atad5 (ATPase family AAA domain containing 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ATAD5 (ATPase family AAA domain containing 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ATAD5 (ATPase family AAA domain containing 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Atad5 (ATPase family AAA domain containing 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Atad5 (ATPase family, AAA domain containing 5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ATAD5 (ATPase family AAA domain containing 5)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	atad5a (ATPase family AAA domain containing 5a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	ELG1	Alliance	DIOPT (OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	elg1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	atad5	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	65,568,569 - 65,616,379 (+)	NCBI		GRCr8
mRatBN7.2	10	65,070,682 - 65,118,489 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	65,070,689 - 65,117,845 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	10	67,427,042 - 67,475,825 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	67,427,066 - 67,473,649 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	67,085,846 - 67,133,349 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	68,292,360 - 68,339,430 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	64,035,434 - 64,084,482 (+)	NCBI		Celera
Cytogenetic Map	10	q25	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

cerebral palsy (ISO)

Developmental Disabilities (ISO)

Developmental Disease (ISO)

neurilemmoma (ISO)

neurofibromatosis 1 (ISO)

ovarian carcinoma (ISO)

sarcoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1-dichloroethene (ISO)

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dimethylhydrazine (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,2'-Methylenebis(4-methyl-6-tert-butylphenol) (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,4'-trichlorobiphenyl (ISO)

2-palmitoylglycerol (ISO)

4-hydroxynon-2-enal (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amphetamine (EXP)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (EXP)

caffeine (ISO)

calcitriol (ISO)

cannabidiol (ISO)

carbon nanotube (ISO)

chlorpyrifos (ISO)

cocaine (EXP)

cyclosporin A (ISO)

DDE (ISO)

dibutyl phthalate (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

endosulfan (EXP)

FR900359 (ISO)

inulin (ISO)

lead(0) (ISO)

lidocaine (EXP)

methyl methanesulfonate (ISO)

okadaic acid (ISO)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

paraquat (ISO)

PCB138 (ISO)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenethyl isothiocyanate (ISO)

pirinixic acid (ISO)

resveratrol (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sodium dichromate (EXP)

succimer (ISO)

sunitinib (ISO)

testosterone (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

topotecan (EXP)

tributylstannane (EXP)

trichostatin A (ISO)

trimellitic anhydride (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

cell population proliferation (IEA,ISO)

DNA damage response (IEA,ISO)

intrinsic apoptotic signaling pathway in response to DNA damage (IEA,ISO)

intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator (IEA,ISO)

isotype switching (IEA,ISO)

negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage (IEA,ISO)

negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator (IEA,ISO)

nuclear DNA replication (IEA,ISO)

positive regulation of B cell proliferation (IEA,ISO)

positive regulation of cell cycle G2/M phase transition (ISO)

positive regulation of DNA replication (ISO)

positive regulation of isotype switching to IgG isotypes (IEA,ISO)

regulation of mitotic cell cycle phase transition (IEA,ISO)

signal transduction in response to DNA damage (IEA,ISO)

Cellular Component

Elg1 RFC-like complex (ISO)

nucleus (IBA,IEA,ISO)

Molecular Function

ATP binding (IEA)

ATP hydrolysis activity (IEA)

DNA binding (IBA)

DNA clamp unloader activity (IBA,ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Predisposition to cancer caused by genetic and functional defects of mammalian Atad5.	Bell DW, etal., PLoS Genet. 2011 Aug;7(8):e1002245. doi: 10.1371/journal.pgen.1002245. Epub 2011 Aug 25.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Identification of genes potentially involved in the increased risk of malignancy in NF1-microdeleted patients.	Pasmant E, etal., Mol Med. 2011 Jan-Feb;17(1-2):79-87. doi: 10.2119/molmed.2010.00079. Epub 2010 Sep 10.
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:15632090	PMID:15983387	PMID:23277426	PMID:25404367

Genomics

Comparative Map Data

Atad5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	65,568,569 - 65,616,379 (+)	NCBI		GRCr8
mRatBN7.2	10	65,070,682 - 65,118,489 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	65,070,689 - 65,117,845 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	10	67,427,042 - 67,475,825 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	67,427,066 - 67,473,649 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	67,085,846 - 67,133,349 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	68,292,360 - 68,339,430 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	64,035,434 - 64,084,482 (+)	NCBI		Celera
Cytogenetic Map	10	q25	NCBI

ATAD5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	30,831,966 - 30,895,869 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	30,831,966 - 30,895,869 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	29,158,984 - 29,222,887 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	26,183,146 - 26,246,421 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	17	26,081,154 - 26,143,209 (+)	NCBI		Celera
Cytogenetic Map	17	q11.2	NCBI
HuRef	17	25,369,472 - 25,433,201 (+)	NCBI		HuRef
CHM1_1	17	29,221,626 - 29,284,818 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	31,777,675 - 31,841,578 (+)	NCBI		T2T-CHM13v2.0

Atad5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	79,980,205 - 80,026,623 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	79,980,226 - 80,026,620 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	80,089,379 - 80,135,797 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	80,089,400 - 80,135,794 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	79,902,902 - 79,949,293 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	79,905,607 - 79,951,986 (+)	NCBI		MGSCv36	mm8
Celera	11	89,725,811 - 89,771,927 (+)	NCBI		Celera
Cytogenetic Map	11	B5	NCBI
cM Map	11	47.48	NCBI

Atad5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955481	6,986,502 - 7,030,742 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955481	6,986,128 - 7,031,113 (+)	NCBI	ChiLan1.0	ChiLan1.0

ATAD5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	33,625,142 - 33,689,216 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	35,506,187 - 35,570,941 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	25,944,259 - 26,009,317 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	25,435,787 - 25,496,752 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	25,436,195 - 25,496,242 (-)	Ensembl	panpan1.1		panPan2

ATAD5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	40,869,778 - 40,917,976 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	40,870,924 - 40,915,629 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	40,028,840 - 40,076,672 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	41,686,779 - 41,734,509 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	41,687,535 - 41,734,429 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	40,472,303 - 40,519,939 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	40,766,948 - 40,814,795 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	40,841,975 - 40,889,705 (-)	NCBI		UU_Cfam_GSD_1.0

Atad5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	39,936,253 - 39,999,208 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936538	2,811,174 - 2,874,113 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936538	2,815,370 - 2,877,084 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ATAD5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	42,874,599 - 42,920,399 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	42,874,705 - 42,920,438 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	44,673,268 - 44,692,341 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ATAD5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	25,536,911 - 25,597,911 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	25,538,131 - 25,597,695 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666075	4,463,593 - 4,526,524 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Atad5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624875	97,670 - 151,080 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624875	97,048 - 154,420 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Atad5
171 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	178
Count of miRNA genes:	128
Interacting mature miRNAs:	141
Transcripts:	ENSRNOT00000035642, ENSRNOT00000065727
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1549846	Scl47	Serum cholesterol level QTL 47	3.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	10	50574707	95574707	Rat
152025229	Scl83	Serum cholesterol level QTL 83	4.33		blood cholesterol amount (VT:0000180)		10	35710580	68663659	Rat
1578779	Tcas10	Tongue tumor susceptibility QTL 10	3.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	10	31297439	76297439	Rat
152025227	Bw195	Body weight QTL 195	5.73		body mass (VT:0001259)		10	46989699	68663659	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	10	26521957	98003205	Rat
2293669	Bmd33	Bone mineral density QTL 33	4.5	0.0001	femur strength trait (VT:0010010)	femoral neck polar moment of inertia (CMO:0001670)	10	49444551	81709989	Rat
152025224	Bw193	Body weight QTL 193	6.47		body mass (VT:0001259)		10	51663405	75085664	Rat
631552	Vetf2	Vascular elastic tissue fragility QTL 2	4.5	0.0002	aorta elastic tissue integrity trait (VT:0010556)	artery internal elastic lamina non-tumorous lesion count (CMO:0001913)	10	41142633	86142633	Rat
61449	Ciaa2	CIA Autoantibody QTL 2	7.1		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	10	63221094	107211142	Rat
631557	Bp136	Blood pressure QTL 136		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	30632053	75632053	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
1298078	Stresp5	Stress response QTL 5	2.99	0.00025	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	42045676	104670812	Rat
2293679	Bmd30	Bone mineral density QTL 30	3.5	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	10	49444551	81709989	Rat
1549831	Bss6	Bone structure and strength QTL 6	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	10	57576521	102576521	Rat
70164	Bw21	Body weight QTL 21	4.36	0.00005	body mass (VT:0001259)	body weight (CMO:0000012)	10	53797494	98952626	Rat
61463	Bp12	Blood pressure QTL 12	6.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	41333258	86333258	Rat
8694173	Bw149	Body weight QTL 149	4.38	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	10	44441699	89441699	Rat
2300218	Hpcl2	Hepatic cholesterol level QTL 2			liver cholesterol amount (VT:0010498)	liver cholesterol level (CMO:0001597)	10	45029650	95600334	Rat
1554317	Bmd4	Bone mineral density QTL 4	9.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	19816042	99406971	Rat
70171	Cari1	Carrageenan-induced inflammation QTL 1	4.9	0.0005	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	10	53797385	107211142	Rat
724527	Bp148	Blood pressure QTL 148		0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	28453136	73453136	Rat
2300171	Bmd58	Bone mineral density QTL 58	4.9	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	26944628	71944628	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
2301967	Cm73	Cardiac mass QTL 73	4.55		heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	14487011	89062041	Rat
2313103	Bss80	Bone structure and strength QTL 80	2	0.0001	tibia strength trait (VT:1000284)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	10	62057807	107057807	Rat
2303118	Mamtr7	Mammary tumor resistance QTL 7		0.003	mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	9658275	104670812	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	42323132	87323132	Rat
2313105	Bss79	Bone structure and strength QTL 79	1.8	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	62057807	107057807	Rat
9589030	Epfw9	Epididymal fat weight QTL 9	19.24	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	10	44441699	89441699	Rat
10402859	Bp381	Blood pressure QTL 381		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	27606468	72606468	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14487011	107057807	Rat
2293652	Bmd22	Bone mineral density QTL 22	4.9	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	10	49444551	81709989	Rat
70198	BpQTLcluster9	Blood pressure QTL cluster 9	2.94		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	42323132	87323132	Rat
2306970	Anxrr22	Anxiety related response QTL 22	5.95		fear/anxiety-related behavior trait (VT:1000241)	number of periods of voluntary immobility (CMO:0001045)	10	61345276	98211570	Rat
1359017	Hrtrt21	Heart rate QTL 21	2.4		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	10	51772940	96772940	Rat
2306787	Ean3	Experimental allergic neuritis QTL 3	3.1		nervous system integrity trait (VT:0010566)	body weight loss (CMO:0001399)	10	53797385	66979128	Rat
7387312	Bw125	Body weight QTL 125	3	0.0047	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight (CMO:0000356)	10	64890616	107211142	Rat
2312672	Insul15	Insulin level QTL 15		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	10	57134272	102134272	Rat
724556	Pur2	Proteinuria QTL 2	5.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	22427500	90627625	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6154182	73453136	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	51770177	107211142	Rat
70223	Bp57	Blood pressure QTL 57	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1	80676123	Rat
2317043	Aia7	Adjuvant induced arthritis QTL 7	3.82		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	10	37565079	82565079	Rat
2317042	Aia20	Adjuvant induced arthritis QTL 20	3.38		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	10	37565079	82565079	Rat
70363	Bp71	Blood pressure QTL 71		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	61345276	81714865	Rat
61402	Niddm3	Non-insulin dependent diabetes mellitus QTL 3	4.58		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	61345413	82564856	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	29299504	107211142	Rat
70364	Bp72	Blood pressure QTL 72			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	51121100	96121100	Rat
2293698	Bss43	Bone structure and strength QTL 43	5.33	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra cross-sectional area (CMO:0001689)	10	59209888	104209888	Rat
631530	Tls3	T-lymphoma susceptibility QTL 3	0	0.0001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	10	51774612	95600334	Rat
1354608	Cm33	Cardiac mass QTL 33	2.8		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	10	54809292	99809292	Rat
1558643	Cm44	Cardiac mass QTL 44	4.8	0.0000368	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	61345276	99703528	Rat
631535	Cm51	Cardiac mass QTL 51	3		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	10	51786282	91669536	Rat
1576319	Cia29	Collagen induced arthritis QTL 29			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	33973921	78973921	Rat
8552805	Bw145	Body weight QTL 145	2.2		body mass (VT:0001259)	change in body weight to body weight ratio (CMO:0002216)	10	41944526	78307017	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
2293705	Bmd25	Bone mineral density QTL 25	7.1	0.0001	femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	10	49444551	81709989	Rat
1331839	Eae18b	Experimental allergic encephalomyelitis QTL 18b	5.8	0.03	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	10	61248303	67785171	Rat
1576308	Schws1	Schwannoma susceptibility QTL 1		0.0041	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	40035094	102359817	Rat
631269	Cia22	Collagen induced arthritis QTL 22	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40035094	104060283	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14487011	104060283	Rat
7207811	Bmd90	Bone mineral density QTL 90	5.2		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	10	49444551	81709989	Rat
1576311	Pia26	Pristane induced arthritis QTL 26			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	31224026	75632053	Rat
631270	Cia23	Collagen induced arthritis QTL 23	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40035094	104060283	Rat
7411614	Foco18	Food consumption QTL 18		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	10	44441699	89441699	Rat
631526	Bp76	Blood pressure QTL 76		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	61345413	66743655	Rat
6893336	Cm75	Cardiac mass QTL 75	0.1	0.87	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	61345276	99703528	Rat
631547	Bp87	Blood pressure QTL 87	4.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	47369470	92369470	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6357896	96121100	Rat
2312662	Slep8	Serum leptin concentration QTL 8		0.05	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	10	57134272	102134272	Rat
6893342	Cm78	Cardiac mass QTL 78	0.1	0.88	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	42876766	79813922	Rat
2292441	Bp308	Blood pressure QTL 308			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	27606468	72606468	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	26521957	98952741	Rat
2312668	Scl65	Serum cholesterol level QTL 65		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	10	57134272	102134272	Rat

Markers in Region

RH142534

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	65,075,763 - 65,076,016 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	67,432,117 - 67,432,369	NCBI	Rnor6.0
Rnor_5.0	10	67,090,909 - 67,091,161	UniSTS	Rnor5.0
RGSC_v3.4	10	68,297,039 - 68,297,291	UniSTS	RGSC3.4
Celera	10	64,040,509 - 64,040,761	UniSTS
Cytogenetic Map	10	q26	UniSTS

BE107606

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	65,113,680 - 65,113,875 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	67,470,030 - 67,470,224	NCBI	Rnor6.0
Rnor_5.0	10	67,128,541 - 67,128,735	UniSTS	Rnor5.0
RGSC_v3.4	10	68,335,268 - 68,335,462	UniSTS	RGSC3.4
Celera	10	64,078,687 - 64,078,881	UniSTS
Cytogenetic Map	10	q26	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	10	49	113	91	90	59	25	59	6	217	96	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_001080963	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006220737	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006246963	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039087647	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_220750	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010055697	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234319	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000035642 ⟹ ENSRNOP00000028975

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	65,070,689 - 65,117,845 (+)	Ensembl
Rnor_6.0 Ensembl	10	67,427,066 - 67,473,649 (+)	Ensembl

RefSeq Acc Id:

XM_006246963 ⟹ XP_006247025

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	65,568,572 - 65,616,379 (+)	NCBI
mRatBN7.2	10	65,070,682 - 65,118,489 (+)	NCBI
Rnor_6.0	10	67,427,042 - 67,475,825 (+)	NCBI
Rnor_5.0	10	67,085,846 - 67,133,349 (+)	NCBI

Sequence:

show sequence

GGCTCCGCCCCTTGCGTGCCGGACGGCGCGAAAACCCAATTGACAAGAACTCCCGCCGAAGCCC
CACTGTTTGACCTGCGTTCGGTGTGCGGCTTCCAGTGCGGCCTGGGGCTCGAGCTCTTAGCCTG
GAGCATCAGGCTGGGGAGGCATTGTGTATTGTCCGGCCGCCTCCTTGGGGCCTGTGCCCGGGCT
TTCCCGACATCTCTGTCTGAGCCTGGCTCGACCACCCTGGGCCCAACCTCACACTCGGCTCCGG
CCGGTGGTCTCTAAGAGACCCGAAACGGGCTCCGCGGTTCGCAGCCAGCTCCCACTGGACTTGC
CGCCCCTATGGCCTCCAGCCAGGTTGAGCCGGACCGCTGGAGGTCCTAGGAGCTCGGGTTCTAG
GTGGCAGGGATCATGGTGGGGGTCCTGACCATGGCGGCGGCTGCAGCACCCCCTCCTGTTAAGG
ACTGCGAGATTGAGCCATGCAGAAAGCGGAGAAAAGATGATGACAGCTCTTCCTGCGAAACAAT
TACCAAATATTTATCACCAATAGGGAAGACTGAAGACAAGGTTTTCTCTCCATCGAAACCCAAT
AATATTCTACATTATTTTAGAAAGACCTCACCCACAACTGAGAAGCTACAATCTACAAAGGAGT
GCAAGTTAAAGCCATCTCCCCCATTGCTTGTTGGCAACAGCAAAGACTGTAAGATACCATTGGA
AGTGTTCTCAAATAGAGAATCTAAGAAGAAAAGAAAGAGAGTTAGTTTATCCCATCAACTGAAT
GATGTCAAAATTGAGAATGAGTCTCCAGTTGAAATTAGTAATGATGATAGTAAGGAGGACTGTG
GTTTAAGTGATTTTGTGGAAAACAGTACTTCTGTTTTCCTTTACAAGAAACATGTGGAAGCTCT
TGCAGAAAGTATTCAAGAAGACAGCAGAAACCAGTCAAATACTATGACCTCCAAAAAAAACTCT
AAGAAAGTAAATCCTAAACAAGGCACCACAAAAAATGATGGAAAGACATTGAGGAAAAGGAAGC
ATAGCCAGGGGACGGACCAGTCTGAAAGTGTACTCGTAGCAGATGAAATAAGTCTGCCAGGGGA
AGGTGGCAAAGACAGCAGGCTGACTAAAGCTTCCCTAACTGATGAAAACAGGACTGCACATCAT
GTAGACTCCAGGGCTCATGCGACTAAAATAGCTGATTTAAACGAGAGCACAATTACTGTTTCCT
ATGAGGAATTTTTAAAAAGTCACAAGACAGCTAAAGTGGAAGACATACCTGACCTGGCAGGACC
AGCCTGCGTTCCTTCGGGGCCCAGCGAGGCTATCAAAAGTGGTTCTGAAGGTGAACCAGAAAGC
TGTGAACCATCTCCACACCTACACCTTAAGACAGTTACTGTTCTTGCACAAGTTCATCCTACTC
CCCCTAAAAAGAAAAGGAAAATACCCCCAATCTTCTTGAAACAGAAACAGCTTGAGCTGGAGAA
TAGTTTCTCTGATCCAGAAAATGAGCAGACAGTTCAGAAAAGGAAATCTAATGTTGTGGTCCAG
GAGGGCCAATTGGAACTGGCTGTGCTGGAAGCTTGGAGCTCTGAGGCTTCAGTACCAAAGTGCA
GCATGGAAGAAAGACAGCAGTTCATGAGAGCATTCAGGCAGCCACCGTCGGAAACGCTCAGAAA
TGGACTCAAGAAACCTTTGGAGAAGCAGAAAGATCCAAGTGAAAAATCTGTCAATGAAGGAGAT
AGCAATTCTGAAAAAATCATAGAAAATCCTAATATTCAAAGAGTTTCAAATCAAGACTGTTCAC
AGGCACACGCTGATAGAGGAGGTTTTCCTAAGGAGAAAAGTAAAAGGCCAAATAAAAAGGGTAA
GAAAACTCGGACCACCGCAGCTGGAAACAGAGAAGAAAACATGCAAAAGGAAAAAACAGCCTTT
TCCTTAAAAGATAATCAAGATCAAAATACCCTACGGAGGAGTGTAAGACAGAAATCAGAAGTTT
TCAAAAGCAGTGCATTACTCAACAGTGAAAATCTTGTTTCTGAGGATACGGCACGTGACTCTGT
AAAACCGTCTCTGTGTGACAGAAATAAATCAAGAAGAGGCAGCACACCAACCAGGGATATGGTC
ACACACGGCAAAGCTGAGCCTGGAAGCGGGCTGGTGAATGTCTCCACACCCAAACCAACCAGGA
GATCTCTGAGAGGTAGCAGTACACCTACCACGGTCACCCTGGGAGGTACTGAGTCTGAGGATGC
CCAGGACACTGATCCAGTGAAGGCTTCCACTCCAAAAGCAGCCAGAATATCAGAAAAGCCCAGC
CTGTATACAGCAGAATTAATAATAATATCCTCTGATTCCGAGAGCCCCATTAGAATGAAATTCA
CTAGAATTAGCACTCCAAAAAAATCCAAGAAAAGTTCTAAGAAATCTGAAAGAACTAAGGAAGA
GCTCACTTCTCAGAAGAACAAGGCAAACAATACTTCAAAAAAGATATCAAAAGCAAAACAACTG
ATTGAGAGAGCAAAAGCATTCCAGGTCAGTGGATCCAAGGCTGAAGAAACCGTGGTGCCCTTGA
GGCGGTCCTCTCGGCACCAGACTCGTCTTGAAAGAGAGAAATCACCAGAAACAGATGACTCTGT
AATATTAATAGATTCAAATCCAACTTCTATAAGACAACCAGAGAAAAATCAGAAGAAACTTCAG
AATTTGAATGATGTACTAGGAAAAAAACTTAACAAGTCTTCTAAAAAAGTTCCTGGAAAAATGA
AAATTGCTCCTTTATTTCTTACCAAAAAGACAAAAAGAACAGCCATTTCTGCCTTTGATTTGGA
TGAAAGCAGTCAAGATTCATCCGGACAAACTCAGGATTGTGATGTACAATTTAAAGCAAAGCGT
GATTTTCTAATGAGTGGTTTGCCAGATTTACTGAAACGACAGATTGCAAAGAGAGCTGCTGCAT
TAGATGTGTACAATGCAGTGAGTACCAGTTTCCAGAGGGTTGTTCATGTACAACAGAAGGATGA
CGAATATTGGTTATGGCATTTGAAGCCACCTTCTTGTCCTCTGTTAACTGAATTTAAGGAATTA
AATACTAAAGTAACAGATCTCTCAAAATGTCTTGTTGCTTTTGGTGAATTTTCAACCTTGAATC
CAAATCCAAGAAGTAATCCTGCTGTTGTGTTGATGAGGACAAGGAAGGAGTTTACCAAAGAAGT
AAGAAATCTTTTGCTGGAGGAAATAAAGTGGTCAAATCCAGAATTTTCTTTGGGAAAATATTTT
CCCTTGCTTCTTAAAAAACGAATTGAGCACCAGGTACTTTGTGAGGGTCATGGTAAACAAGAGT
CTGGAACTGAAGACATGCTTTGGACAGAAAAGTACCAGCCTCAGAATTCGAATGAACTTGTAGG
CAATGAGTTAGCTATCAAAAAGTTACACAGTTGGTTGAAGGATTGGAAAAGAAGAGCTGAACTG
GAAGAAAGACAGAATTTGAAAGGAAAGAGAGATGAAAAAGAGGAAGACCTGTCGGACGGCACGG
ACTTCAAAGGCAGTTCAGATGATGAAGAGTATCGCCTTTGCAACACTGTTCTTATAACGGGACC
AACAGGAGTGGGGAAGACCGCCGCCGTGTATGCTTGCGCTCAGGAGCTGGGGTTTAAGATATTT
GAAGTGAATGCCTCTTCCCAGCGAAGTGGCAGGCAGATCCTGTCTCAGCTGAGGGAGGCTACCC
AGTCCCATCAAGTGGATAAACAAGGCGCAAACTCACAAAAGCCCTGTTTCTTTAGTAACTACAA
CATTGGCAAGTCACCAAAAAAGTTAAACTCCCCTGGGAAAGTTATCACGTCACCAAGGAAGCTT
CCTCCACTGTCGCCAAAGACAGGTGGGCAGAAGCGAGCACTTCTCCCTAAAACTTTGGCAAATT
ACTTTAAAGTGTCCTCCAAATCCAACAATAATGAAGACGTGGGAGCACGCCCAGGAAATGATAA
AGGAGTCAAAAATTCTTCTTTGGAACAGAGGCAAATTATTCAGACTAAATCAACAAATGCAAAT
AATTCAAATATTAAAGATTTTGGAGCTGAAGAATCCAACAGAAAGAACGCAACATCACTCATTC
TCTTTGAGGAGGTTGATGTCATTTTTGATGAAGATGCTGGATTTTTGAATGCAGTCAAAACATT
CATGGCAACAACTAAACGACCAGTAATTCTCACTACAAGTGATCCCACATTTAGTTTAGTGTTT
GATGGCTGTTTTGAAGAAATCAATTTCAATATTCCTTCCCTGCTAAACGTTGCGAGCTATCTAC
AAGTGATCTGTTTAGTTGAGAACTTCAGAACTGACTTTAAAGACTTTGTTACCTTGTTGACTGC
AAATGCTTGTGACATCAGAAAAAGTATCCTTTACTTACAGTTTTGGATAAGAAGTGGAGGTGGA
ATTTTAGAAGAAAGACCATTATCACATTGTCGAGAAAATAGCAGAAATACACTGGTTTGTTCTG
AACATGAATCTGATGCGAACATTAACTCTAAAAACACCAAAAGGAACCGTGTGGCCCTCCCCAG
ATGTGACACCGGCTGTGCAGAGGCTTTGTTTGGACTCAAGAACATTGCCTGCCCATCCCAAGAC
TTACTTTCATCGTTAAAGCACAAGATCACAACCAAGGAAGAGTGGCAGAGACTAATTCAGCTTC
TCACTGAATTCCACATGCAAAATGTAGATCTGTTACATAGTAATCTTGAGTTCATCCTGCCATT
GCCAGTTAACATGATTCCAGAAGTAAGAGGTGCTTATGGCTTCCCAGTGACTACACAGGCCAGT
GCCCCAGCAAGCATGAAGCTCCTTAACAGGAAGCAGTCAGAAGACCAGCCATTGAGAAAATCAC
AGAAAAGGAAACAGAAAAAGATGGTGACCCTTGATGACAGTGACCTGTTTGACACTAGCTTAGA
CTTTTCTGGTGAACTACCTAGCTTATCTCCTGCAGCTTCCTCATCTGAAGAAGACAACACAAGC
AGAGACAGAGGCAGCAACCCAGAGATAAAGACACAGAACAAAGGTTTCAAGCCTCACTCTCTAC
CTCAGCCTCCTAAGACACTAGCAGAGAAGAAGTGCTGCGTGCTCGTTTCCCACTGTTTAAACTC
TCTCAGTGAGTTCATGGAGAACATGTCCTTCGTAGATGCCCTGTTTACAGATCCAGGGGAACAG
AATGAATTGGGTAAAAGTGCCTTCCACTGGACAAACGGAAAGGTTAAAAGCGGACTTTGTGATG
AGTTTAGTCTTGAGAACAGAGATGGGTGGTCTCCTCGGAGCTCTGAAGAATTAAAAGCAACTGC
AGAAGCACTCAGCTTTACTAAATGTTCTTCTACCATTTCAAAAGCACTGGAGTCCTTGAATTCA
TGCAAGCAATTAGGAAGAGACCCAACCACTGAACTCACTTTCTGTGTTTCACAAAGGAGCCACG
ATGTATGCTTCCGCCAGTCGGCAGCTAATCTGTACAATGCTGACAAGAGGATGGCAGTCATTAA
AAGTGTGTTTTCTACTCCTTCTTTCCTGACCCTGGGTAATAAACAAGCTAGTATAATTGACTAC
CTGCCAACTCTTCGAAACATTTGTCGGACAGAAAAGCTAAAAGAACAAGAGAAAAATAAAAGAA
GGTTTCTGCACTATTTTGAAGGAATTCATCTAGATATTCCTGAGGAAACCATAACTCCTTTGGC
AGCTGACTTCCCTTGATGTGTCCCGTCATTAGTCTTGTACAGATTGTGTGGTCCTGATGACACA
CTTTAGAGTATGGTGACTTTAAACAGCTTATCTCTTAATGTAAATTTTAAAAGACTTTTGTATT
TTTGTGGTTCAAGTATTTAAAATCAAAATTCTGAGTTATAAACTGTATATATGATTGTGGTATC
TCTCTTGGATGTTTTGGGTTATTTTTGCTTTATTGTCTACTTTCTGTATGTGTGAACTGTTTGT
AGAAGGTAATTTTCACTAATAGATTTCTAGAGCTGTTTCAGTGCTGAGCTCACCTGTCATTTCC
TTTTTCCTGTAATCTCCCGCTACTGACCAGCGTCAGAGCTGTGCCACTGTAAATAGTCAGTCTG
TAAAGTTACACAATGTGAAACAGTTCCGTACAGGGTATTTTTAAACTGTCGCAGGAAGCAAATT
ATGCCTCCGCTGTGGAAAGCATTGCCTTGATTCCTTGTGCCTTCTTCCAGAATGTTTTACCATT
TAATCATTGAGTCATTGGTGTTGGCAGAGTAAAGCGTTCTGAATCCTAGTGTTCACAAACCTTA
TCACCCTGCATGGTTACAGTCATGAGCATTTTGCCAACTCAAATCATTTGTACATTTTCTGGTA
CTTTTATATTATTATATTTTATTTCATAAAGTAATGACATTAGTTTATCTATTTTGGACAACTT
GTTGATGGTTGAAGAAATAATAAAGGATTCTACCATAGGGTTTCTACCTAACAGTTATTTCCAT
TTAAGTATGGCTTTTTATTTTTTTGGTGCTGAGGATTAAACTTTGTATTGTAGGCAAATGTCCT
GTCTTAGTGTATACACAGGTGTTATGTTTTAGTAATTATTTGCAGTGGTACATAGCAAACCCAA
GACCTTTGTGCACTCTCTGAGCATGCTTAACCACAGAGCTAGGACCCTCACCCTGTTTTTGAGG
CAGGATCTGGTATATTGCTTAGGCTACCCCCAAACTCCTTCCAGAATTTCATAATCCCTATCTC
AAGCTTCTTAAGTACTTGGGACGACAGGCATATGCTACACACAGAGCAAGTCATCTTTTAATAT
TGTTTAAGTACCTGTTTTTTACTTTAGTAGCAAGATTTTAAAATACACATTTTACTTAATATTA
TTTTACAGATAATCAGGTTTGTTTAAAATTCCTTCAAAATGTAAATATTTGTATAACATAATAT
TCAGGTACATTTTCTGATGAATTGTACTTTTAATTCAGAAGGTAAGGATCCTAGTTTTGTACTT
TTTTAAAATATGGGTGCATACCTGCTTACAAATGTATATGAAGATGTGTTCTTACCTCTTGCTC
AACCCGCCTTTTCTTGTATTAATTAGTAAACCATTCTAATTAAAAGTTAAAGCTAAATGCTTAG
TGTGGTAATTAAATTATTTATGTTTTTTGTTTTTTGAGACAAGGTTTCTCTTTTTAAGGATTTT
ATGTTTTTATGTGTATGGTTGTTTTTCTGCATGTATGTGAACCACAGGCTTGCAGTATCCTTGA
GGTCAGAAGGGGCCATTGGCTATGCTGTAACTGGAGCTAAGAATGGTTATGAGTTGCTTGCCTT
GTTGAGGCTGGGAACTGTACCCAAGACCCCTACAAGGGCAGCAAGTACTTTTAACTGCTGAAGC
ATCTTTCCAGCTCTTGAAGCTTTTAAGTGTCTGTATCTGTGTTTCCCTGCTGGGTGGCTACTGT
GGGTGTGTAGCTGCTATTCAGGTGTTTTATGAGGTTTCTGATCATTCTCAACAATTGATCAACC
AATATAAAGTAAATCATAAAACTGTTCAAGTTCTCAAAACTACCTCTTTAGCATGACCTAGTGA
TGGGGTTTGTTGTTGTTTTTTTAGTTTGATAGAGCATTTTTCCCCCATTTCTATGTGTCAAACC
TAGACAAGCAGTTTACCACCAAGCTACAACCCCAACCTGTCTATCAAATTTTTTTCTTTTTGGG
GGAGGCAGGAGTTTGGAGACAAAAATGTCACTATATTCCCAAGCTAACCTCACACAATCTTACT
GCTTCTGTGTTTTGAGTGTACAGATTACAGGTATAACTATCAATTCAGCTAGTTCTTCCTCTTA
CTGGGGTTTGTTTTTGATTTTATTTCAGTTTTTCTCTGTGTGGCCCTGGATAGCTATCCCAAAA
TGTGTAGACCTGGCCTGGCTGGCCCTGAACTCAGATCTGCCTGCCTCTACCTCCTAGCATGCTA
GGATTAAAGAAATGCACCACCACCACCCAGCTCTTAAATTTATTTTTTAAATGGTTACCTTTTA
TTTTTCTATGTGTATGTGTTTCCTGGGTGTGTCTGTGCAGGAGAACAAAGAAGAATGCCACATC
CCTTGGAACTGACATTATAG

hide sequence

RefSeq Acc Id:

XM_039087647 ⟹ XP_038943575

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	65,568,570 - 65,616,379 (+)	NCBI
mRatBN7.2	10	65,070,682 - 65,118,489 (+)	NCBI

RefSeq Acc Id:

XM_220750 ⟹ XP_220750

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	65,568,570 - 65,616,379 (+)	NCBI
mRatBN7.2	10	65,070,682 - 65,118,489 (+)	NCBI
Rnor_6.0	10	67,427,042 - 67,475,825 (+)	NCBI
Rnor_5.0	10	67,085,846 - 67,133,349 (+)	NCBI
RGSC_v3.4	10	68,292,360 - 68,339,430 (+)	RGD

Sequence:

show sequence

GGCTCCGCCCCTTGCGTGCCGGACGGCGCGAAAACCCAATTGACAAGAACTCCCGCCGAAGCCC
CACTGTTTGACCTGCGTTCGGTGTGCGGCTTCCAGTGCGGCCTGGGGCTCGAGCTCTTAGCCTG
GAGCATCAGGCTGGGGAGGCATTGTGTATTGTCCGGCCGCCTCCTTGGGGCCTGTGCCCGGGCT
TTCCCGACATCTCTGTCTGAGCCTGGCTCGACCACCCTGGGCCCAACCTCACACTCGGCTCCGG
CCGGTGGTCTCTAAGAGACCCGAAACGGGCTCCGCGGTTCGCAGCCAGCTCCCACTGGACTTGC
CGCCCCTATGGCCTCCAGCCAGGTTGAGCCGGACCGCTGGAGGTCCTAGGAGCTCGGGTTCTAG
GTGGCAGGGATCATGGTGGGGGTCCTGACCATGGCGGCGGCTGCAGCACCCCCTCCTGTTAAGG
ACTGCGAGATTGAGCCATGCAGAAAGCGGAGAAAAGATGATGACAGCTCTTCCTGCGAAACAAT
TACCAAATATTTATCACCAATAGGGAAGACTGAAGACAAGGTTTTCTCTCCATCGAAACCCAAT
AATATTCTACATTATTTTAGAAAGACCTCACCCACAACTGAGAAGCTACAATCTACAAAGGAGT
GCAAGTTAAAGCCATCTCCCCCATTGCTTGTTGGCAACAGCAAAGACTGTAAGATACCATTGGA
AGTGTTCTCAAATAGAGAATCTAAGAAGAAAAGAAAGAGAGTTAGTTTATCCCATCAACTGAAT
GATGTCAAAATTGAGAATGAGTCTCCAGTTGAAATTAGTAATGATGATAGTAAGGAGGACTGTG
GTTTAAGTGATTTTGTGGAAAACAGTACTTCTGTTTTCCTTTACAAGAAACATGTGGAAGCTCT
TGCAGAAAGTATTCAAGAAGACAGCAGAAACCAGTCAAATACTATGACCTCCAAAAAAAACTCT
AAGAAAGTAAATCCTAAACAAGGCACCACAAAAAATGATGGAAAGACATTGAGGAAAAGGAAGC
ATAGCCAGGGGACGGACCAGTCTGAAAGTGTACTCGTAGCAGATGAAATAAGTCTGCCAGGGGA
AGGTGGCAAAGACAGCAGGCTGACTAAAGCTTCCCTAACTGATGAAAACAGGACTGCACATCAT
GTAGACTCCAGGGCTCATGCGACTAAAATAGCTGATTTAAACGAGAGCACAATTACTGTTTCCT
ATGAGGAATTTTTAAAAAGTCACAAGACAGCTAAAGTGGAAGACATACCTGACCTGGCAGGACC
AGCCTGCGTTCCTTCGGGGCCCAGCGAGGCTATCAAAAGTGGTTCTGAAGGTGAACCAGAAAGC
TGTGAACCATCTCCACACCTACACCTTAAGACAGTTACTGTTCTTGCACAAGTTCATCCTACTC
CCCCTAAAAAGAAAAGGAAAATACCCCCAATCTTCTTGAAACAGAAACAGCTTGAGCTGGAGAA
TAGTTTCTCTGATCCAGAAAATGAGCAGACAGTTCAGAAAAGGAAATCTAATGTTGTGGTCCAG
GAGGGCCAATTGGAACTGGCTGTGCTGGAAGCTTGGAGCTCTGAGGCTTCAGTACCAAAGTGCA
GCATGGAAGAAAGACAGCAGTTCATGAGAGCATTCAGGCAGCCACCGTCGGAAACGCTCAGAAA
TGGACTCAAGAAACCTTTGGAGAAGCAGAAAGATCCAAGTGAAAAATCTGTCAATGAAGGAGAT
AGCAATTCTGAAAAAATCATAGAAAATCCTAATATTCAAAGAGTTTCAAATCAAGACTGTTCAC
AGGCACACGCTGATAGAGGAGGTTTTCCTAAGGAGAAAAGTAAAAGGCCAAATAAAAAGGGTAA
GAAAACTCGGACCACCGCAGCTGGAAACAGAGAAGAAAACATGCAAAAGGAAAAAACAGCCTTT
TCCTTAAAAGATAATCAAGATCAAAATACCCTACGGAGGAGTGTAAGACAGAAATCAGAAGTTT
TCAAAAGCAGTGCATTACTCAACAGTGAAAATCTTGTTTCTGAGGATACGGCACGTGACTCTGT
AAAACCGTCTCTGTGTGACAGAAATAAATCAAGAAGAGGCAGCACACCAACCAGGGATATGGTC
ACACACGGCAAAGCTGAGCCTGGAAGCGGGCTGGTGAATGTCTCCACACCCAAACCAACCAGGA
GATCTCTGAGAGGTAGCAGTACACCTACCACGGTCACCCTGGGAGGTACTGAGTCTGAGGATGC
CCAGGACACTGATCCAGTGAAGGCTTCCACTCCAAAAGCAGCCAGAATATCAGAAAAGCCCAGC
CTGTATACAGCAGAATTAATAATAATATCCTCTGATTCCGAGAGCCCCATTAGAATGAAATTCA
CTAGAATTAGCACTCCAAAAAAATCCAAGAAAAGTTCTAAGAAATCTGAAAGAACTAAGGAAGA
GCTCACTTCTCAGAAGAACAAGGCAAACAATACTTCAAAAAAGATATCAAAAGCAAAACAACTG
ATTGAGAGAGCAAAAGCATTCCAGGTCAGTGGATCCAAGGCTGAAGAAACCGTGGTGCCCTTGA
GGCGGTCCTCTCGGCACCAGACTCGTCTTGAAAGAGAGAAATCACCAGAAACAGATGACTCTGT
AATATTAATAGATTCAAATCCAACTTCTATAAGACAACCAGAGAAAAATCAGAAGAAACTTCAG
AATTTGAATGATGTACTAGGAAAAAAACTTAACAAGTCTTCTAAAAAAGTTCCTGGAAAAATGA
AAATTGCTCCTTTATTTCTTACCAAAAAGACAAAAAGAACAGCCATTTCTGCCTTTGATTTGGA
TGAAAGCAGTCAAGATTCATCCGGACAAACTCAGGATTGTGATGTACAATTTAAAGCAAAGCGT
GATTTTCTAATGAGTGGTTTGCCAGATTTACTGAAACGACAGATTGCAAAGAGAGCTGCTGCAT
TAGATGTGTACAATGCAGTGAGTACCAGTTTCCAGAGGGTTGTTCATGTACAACAGAAGGATGA
CGAATATTGGTTATGGCATTTGAAGCCACCTTCTTGTCCTCTGTTAACTGAATTTAAGGAATTA
AATACTAAAGTAACAGATCTCTCAAAATGTCTTGTTGCTTTTGGTGAATTTTCAACCTTGAATC
CAAATCCAAGAAGTAATCCTGCTGTTGTGTTGATGAGGACAAGGAAGGAGTTTACCAAAGAAGT
AAGAAATCTTTTGCTGGAGGAAATAAAGTGGTCAAATCCAGAATTTTCTTTGGGAAAATATTTT
CCCTTGCTTCTTAAAAAACGAATTGAGCACCAGGTACTTTGTGAGGGTCATGGTAAACAAGCAA
GTCCACAACTACAGCCTGATGTCAGTCAAAAAGAAACCAAAAGGAAACAAGTGGAAACAGGAAG
TCAGAAGTCAAAAAGAAAAAAACCAAATGAATATTCAGTGAGCCCAGAAAAGATAAAGGGGAAG
TCAAAAGAACTTGACAAAAGAATCAGCTCTTCTTGTATAAATCTAGATCCTTCCAAAGAGTCTG
GAACTGAAGACATGCTTTGGACAGAAAAGTACCAGCCTCAGAATTCGAATGAACTTGTAGGCAA
TGAGTTAGCTATCAAAAAGTTACACAGTTGGTTGAAGGATTGGAAAAGAAGAGCTGAACTGGAA
GAAAGACAGAATTTGAAAGGAAAGAGAGATGAAAAAGAGGAAGACCTGTCGGACGGCACGGACT
TCAAAGGCAGTTCAGATGATGAAGAGTATCGCCTTTGCAACACTGTTCTTATAACGGGACCAAC
AGGAGTGGGGAAGACCGCCGCCGTGTATGCTTGCGCTCAGGAGCTGGGGTTTAAGATATTTGAA
GTGAATGCCTCTTCCCAGCGAAGTGGCAGGCAGATCCTGTCTCAGCTGAGGGAGGCTACCCAGT
CCCATCAAGTGGATAAACAAGGCGCAAACTCACAAAAGCCCTGTTTCTTTAGTAACTACAACAT
TGGCAAGTCACCAAAAAAGTTAAACTCCCCTGGGAAAGTTATCACGTCACCAAGGAAGCTTCCT
CCACTGTCGCCAAAGACAGGTGGGCAGAAGCGAGCACTTCTCCCTAAAACTTTGGCAAATTACT
TTAAAGTGTCCTCCAAATCCAACAATAATGAAGACGTGGGAGCACGCCCAGGAAATGATAAAGG
AGTCAAAAATTCTTCTTTGGAACAGAGGCAAATTATTCAGACTAAATCAACAAATGCAAATAAT
TCAAATATTAAAGATTTTGGAGCTGAAGAATCCAACAGAAAGAACGCAACATCACTCATTCTCT
TTGAGGAGGTTGATGTCATTTTTGATGAAGATGCTGGATTTTTGAATGCAGTCAAAACATTCAT
GGCAACAACTAAACGACCAGTAATTCTCACTACAAGTGATCCCACATTTAGTTTAGTGTTTGAT
GGCTGTTTTGAAGAAATCAATTTCAATATTCCTTCCCTGCTAAACGTTGCGAGCTATCTACAAG
TGATCTGTTTAGTTGAGAACTTCAGAACTGACTTTAAAGACTTTGTTACCTTGTTGACTGCAAA
TGCTTGTGACATCAGAAAAAGTATCCTTTACTTACAGTTTTGGATAAGAAGTGGAGGTGGAATT
TTAGAAGAAAGACCATTATCACATTGTCGAGAAAATAGCAGAAATACACTGGTTTGTTCTGAAC
ATGAATCTGATGCGAACATTAACTCTAAAAACACCAAAAGGAACCGTGTGGCCCTCCCCAGATG
TGACACCGGCTGTGCAGAGGCTTTGTTTGGACTCAAGAACATTGCCTGCCCATCCCAAGACTTA
CTTTCATCGTTAAAGCACAAGATCACAACCAAGGAAGAGTGGCAGAGACTAATTCAGCTTCTCA
CTGAATTCCACATGCAAAATGTAGATCTGTTACATAGTAATCTTGAGTTCATCCTGCCATTGCC
AGTTAACATGATTCCAGAAGTAAGAGGTGCTTATGGCTTCCCAGTGACTACACAGGCCAGTGCC
CCAGCAAGCATGAAGCTCCTTAACAGGAAGCAGTCAGAAGACCAGCCATTGAGAAAATCACAGA
AAAGGAAACAGAAAAAGATGGTGACCCTTGATGACAGTGACCTGTTTGACACTAGCTTAGACTT
TTCTGGTGAACTACCTAGCTTATCTCCTGCAGCTTCCTCATCTGAAGAAGACAACACAAGCAGA
GACAGAGGCAGCAACCCAGAGATAAAGACACAGAACAAAGGTTTCAAGCCTCACTCTCTACCTC
AGCCTCCTAAGACACTAGCAGAGAAGAAGTGCTGCGTGCTCGTTTCCCACTGTTTAAACTCTCT
CAGTGAGTTCATGGAGAACATGTCCTTCGTAGATGCCCTGTTTACAGATCCAGGGGAACAGAAT
GAATTGGGTAAAAGTGCCTTCCACTGGACAAACGGAAAGGTTAAAAGCGGACTTTGTGATGAGT
TTAGTCTTGAGAACAGAGATGGGTGGTCTCCTCGGAGCTCTGAAGAATTAAAAGCAACTGCAGA
AGCACTCAGCTTTACTAAATGTTCTTCTACCATTTCAAAAGCACTGGAGTCCTTGAATTCATGC
AAGCAATTAGGAAGAGACCCAACCACTGAACTCACTTTCTGTGTTTCACAAAGGAGCCACGATG
TATGCTTCCGCCAGTCGGCAGCTAATCTGTACAATGCTGACAAGAGGATGGCAGTCATTAAAAG
TGTGTTTTCTACTCCTTCTTTCCTGACCCTGGGTAATAAACAAGCTAGTATAATTGACTACCTG
CCAACTCTTCGAAACATTTGTCGGACAGAAAAGCTAAAAGAACAAGAGAAAAATAAAAGAAGGT
TTCTGCACTATTTTGAAGGAATTCATCTAGATATTCCTGAGGAAACCATAACTCCTTTGGCAGC
TGACTTCCCTTGATGTGTCCCGTCATTAGTCTTGTACAGATTGTGTGGTCCTGATGACACACTT
TAGAGTATGGTGACTTTAAACAGCTTATCTCTTAATGTAAATTTTAAAAGACTTTTGTATTTTT
GTGGTTCAAGTATTTAAAATCAAAATTCTGAGTTATAAACTGTATATATGATTGTGGTATCTCT
CTTGGATGTTTTGGGTTATTTTTGCTTTATTGTCTACTTTCTGTATGTGTGAACTGTTTGTAGA
AGGTAATTTTCACTAATAGATTTCTAGAGCTGTTTCAGTGCTGAGCTCACCTGTCATTTCCTTT
TTCCTGTAATCTCCCGCTACTGACCAGCGTCAGAGCTGTGCCACTGTAAATAGTCAGTCTGTAA
AGTTACACAATGTGAAACAGTTCCGTACAGGGTATTTTTAAACTGTCGCAGGAAGCAAATTATG
CCTCCGCTGTGGAAAGCATTGCCTTGATTCCTTGTGCCTTCTTCCAGAATGTTTTACCATTTAA
TCATTGAGTCATTGGTGTTGGCAGAGTAAAGCGTTCTGAATCCTAGTGTTCACAAACCTTATCA
CCCTGCATGGTTACAGTCATGAGCATTTTGCCAACTCAAATCATTTGTACATTTTCTGGTACTT
TTATATTATTATATTTTATTTCATAAAGTAATGACATTAGTTTATCTATTTTGGACAACTTGTT
GATGGTTGAAGAAATAATAAAGGATTCTACCATAGGGTTTCTACCTAACAGTTATTTCCATTTA
AGTATGGCTTTTTATTTTTTTGGTGCTGAGGATTAAACTTTGTATTGTAGGCAAATGTCCTGTC
TTAGTGTATACACAGGTGTTATGTTTTAGTAATTATTTGCAGTGGTACATAGCAAACCCAAGAC
CTTTGTGCACTCTCTGAGCATGCTTAACCACAGAGCTAGGACCCTCACCCTGTTTTTGAGGCAG
GATCTGGTATATTGCTTAGGCTACCCCCAAACTCCTTCCAGAATTTCATAATCCCTATCTCAAG
CTTCTTAAGTACTTGGGACGACAGGCATATGCTACACACAGAGCAAGTCATCTTTTAATATTGT
TTAAGTACCTGTTTTTTACTTTAGTAGCAAGATTTTAAAATACACATTTTACTTAATATTATTT
TACAGATAATCAGGTTTGTTTAAAATTCCTTCAAAATGTAAATATTTGTATAACATAATATTCA
GGTACATTTTCTGATGAATTGTACTTTTAATTCAGAAGGTAAGGATCCTAGTTTTGTACTTTTT
TAAAATATGGGTGCATACCTGCTTACAAATGTATATGAAGATGTGTTCTTACCTCTTGCTCAAC
CCGCCTTTTCTTGTATTAATTAGTAAACCATTCTAATTAAAAGTTAAAGCTAAATGCTTAGTGT
GGTAATTAAATTATTTATGTTTTTTGTTTTTTGAGACAAGGTTTCTCTTTTTAAGGATTTTATG
TTTTTATGTGTATGGTTGTTTTTCTGCATGTATGTGAACCACAGGCTTGCAGTATCCTTGAGGT
CAGAAGGGGCCATTGGCTATGCTGTAACTGGAGCTAAGAATGGTTATGAGTTGCTTGCCTTGTT
GAGGCTGGGAACTGTACCCAAGACCCCTACAAGGGCAGCAAGTACTTTTAACTGCTGAAGCATC
TTTCCAGCTCTTGAAGCTTTTAAGTGTCTGTATCTGTGTTTCCCTGCTGGGTGGCTACTGTGGG
TGTGTAGCTGCTATTCAGGTGTTTTATGAGGTTTCTGATCATTCTCAACAATTGATCAACCAAT
ATAAAGTAAATCATAAAACTGTTCAAGTTCTCAAAACTACCTCTTTAGCATGACCTAGTGATGG
GGTTTGTTGTTGTTTTTTTAGTTTGATAGAGCATTTTTCCCCCATTTCTATGTGTCAAACCTAG
ACAAGCAGTTTACCACCAAGCTACAACCCCAACCTGTCTATCAAATTTTTTTCTTTTTGGGGGA
GGCAGGAGTTTGGAGACAAAAATGTCACTATATTCCCAAGCTAACCTCACACAATCTTACTGCT
TCTGTGTTTTGAGTGTACAGATTACAGGTATAACTATCAATTCAGCTAGTTCTTCCTCTTACTG
GGGTTTGTTTTTGATTTTATTTCAGTTTTTCTCTGTGTGGCCCTGGATAGCTATCCCAAAATGT
GTAGACCTGGCCTGGCTGGCCCTGAACTCAGATCTGCCTGCCTCTACCTCCTAGCATGCTAGGA
TTAAAGAAATGCACCACCACCACCCAGCTCTTAAATTTATTTTTTAAATGGTTACCTTTTATTT
TTCTATGTGTATGTGTTTCCTGGGTGTGTCTGTGCAGGAGAACAAAGAAGAATGCCACATCCCT
TGGAACTGACATTATAG

hide sequence

RefSeq Acc Id:

XR_010055697

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	65,568,569 - 65,592,452 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_006247025	(Get FASTA)	NCBI Sequence Viewer
	XP_038943575	(Get FASTA)	NCBI Sequence Viewer
	XP_220750	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM05407	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000028975
	ENSRNOP00000028975.5
	ENSRNOP00000099936
	ENSRNOP00000108956

RefSeq Acc Id:	XP_220750 ⟸ XM_220750
- Peptide Label:	isoform X1
- UniProtKB:	D4A058 (UniProtKB/TrEMBL), A6HHA2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVGVLTMAAAAAPPPVKDCEIEPCRKRRKDDDSSSCETITKYLSPIGKTEDKVFSPSKPNNILH YFRKTSPTTEKLQSTKECKLKPSPPLLVGNSKDCKIPLEVFSNRESKKKRKRVSLSHQLNDVKI ENESPVEISNDDSKEDCGLSDFVENSTSVFLYKKHVEALAESIQEDSRNQSNTMTSKKNSKKVN PKQGTTKNDGKTLRKRKHSQGTDQSESVLVADEISLPGEGGKDSRLTKASLTDENRTAHHVDSR AHATKIADLNESTITVSYEEFLKSHKTAKVEDIPDLAGPACVPSGPSEAIKSGSEGEPESCEPS PHLHLKTVTVLAQVHPTPPKKKRKIPPIFLKQKQLELENSFSDPENEQTVQKRKSNVVVQEGQL ELAVLEAWSSEASVPKCSMEERQQFMRAFRQPPSETLRNGLKKPLEKQKDPSEKSVNEGDSNSE KIIENPNIQRVSNQDCSQAHADRGGFPKEKSKRPNKKGKKTRTTAAGNREENMQKEKTAFSLKD NQDQNTLRRSVRQKSEVFKSSALLNSENLVSEDTARDSVKPSLCDRNKSRRGSTPTRDMVTHGK AEPGSGLVNVSTPKPTRRSLRGSSTPTTVTLGGTESEDAQDTDPVKASTPKAARISEKPSLYTA ELIIISSDSESPIRMKFTRISTPKKSKKSSKKSERTKEELTSQKNKANNTSKKISKAKQLIERA KAFQVSGSKAEETVVPLRRSSRHQTRLEREKSPETDDSVILIDSNPTSIRQPEKNQKKLQNLND VLGKKLNKSSKKVPGKMKIAPLFLTKKTKRTAISAFDLDESSQDSSGQTQDCDVQFKAKRDFLM SGLPDLLKRQIAKRAAALDVYNAVSTSFQRVVHVQQKDDEYWLWHLKPPSCPLLTEFKELNTKV TDLSKCLVAFGEFSTLNPNPRSNPAVVLMRTRKEFTKEVRNLLLEEIKWSNPEFSLGKYFPLLL KKRIEHQVLCEGHGKQASPQLQPDVSQKETKRKQVETGSQKSKRKKPNEYSVSPEKIKGKSKEL DKRISSSCINLDPSKESGTEDMLWTEKYQPQNSNELVGNELAIKKLHSWLKDWKRRAELEERQN LKGKRDEKEEDLSDGTDFKGSSDDEEYRLCNTVLITGPTGVGKTAAVYACAQELGFKIFEVNAS SQRSGRQILSQLREATQSHQVDKQGANSQKPCFFSNYNIGKSPKKLNSPGKVITSPRKLPPLSP KTGGQKRALLPKTLANYFKVSSKSNNNEDVGARPGNDKGVKNSSLEQRQIIQTKSTNANNSNIK DFGAEESNRKNATSLILFEEVDVIFDEDAGFLNAVKTFMATTKRPVILTTSDPTFSLVFDGCFE EINFNIPSLLNVASYLQVICLVENFRTDFKDFVTLLTANACDIRKSILYLQFWIRSGGGILEER PLSHCRENSRNTLVCSEHESDANINSKNTKRNRVALPRCDTGCAEALFGLKNIACPSQDLLSSL KHKITTKEEWQRLIQLLTEFHMQNVDLLHSNLEFILPLPVNMIPEVRGAYGFPVTTQASAPASM KLLNRKQSEDQPLRKSQKRKQKKMVTLDDSDLFDTSLDFSGELPSLSPAASSSEEDNTSRDRGS NPEIKTQNKGFKPHSLPQPPKTLAEKKCCVLVSHCLNSLSEFMENMSFVDALFTDPGEQNELGK SAFHWTNGKVKSGLCDEFSLENRDGWSPRSSEELKATAEALSFTKCSSTISKALESLNSCKQLG RDPTTELTFCVSQRSHDVCFRQSAANLYNADKRMAVIKSVFSTPSFLTLGNKQASIIDYLPTLR NICRTEKLKEQEKNKRRFLHYFEGIHLDIPEETITPLAADFP hide sequence

RefSeq Acc Id:	XP_006247025 ⟸ XM_006246963
- Peptide Label:	isoform X3
- UniProtKB:	A6HHA2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVGVLTMAAAAAPPPVKDCEIEPCRKRRKDDDSSSCETITKYLSPIGKTEDKVFSPSKPNNILH YFRKTSPTTEKLQSTKECKLKPSPPLLVGNSKDCKIPLEVFSNRESKKKRKRVSLSHQLNDVKI ENESPVEISNDDSKEDCGLSDFVENSTSVFLYKKHVEALAESIQEDSRNQSNTMTSKKNSKKVN PKQGTTKNDGKTLRKRKHSQGTDQSESVLVADEISLPGEGGKDSRLTKASLTDENRTAHHVDSR AHATKIADLNESTITVSYEEFLKSHKTAKVEDIPDLAGPACVPSGPSEAIKSGSEGEPESCEPS PHLHLKTVTVLAQVHPTPPKKKRKIPPIFLKQKQLELENSFSDPENEQTVQKRKSNVVVQEGQL ELAVLEAWSSEASVPKCSMEERQQFMRAFRQPPSETLRNGLKKPLEKQKDPSEKSVNEGDSNSE KIIENPNIQRVSNQDCSQAHADRGGFPKEKSKRPNKKGKKTRTTAAGNREENMQKEKTAFSLKD NQDQNTLRRSVRQKSEVFKSSALLNSENLVSEDTARDSVKPSLCDRNKSRRGSTPTRDMVTHGK AEPGSGLVNVSTPKPTRRSLRGSSTPTTVTLGGTESEDAQDTDPVKASTPKAARISEKPSLYTA ELIIISSDSESPIRMKFTRISTPKKSKKSSKKSERTKEELTSQKNKANNTSKKISKAKQLIERA KAFQVSGSKAEETVVPLRRSSRHQTRLEREKSPETDDSVILIDSNPTSIRQPEKNQKKLQNLND VLGKKLNKSSKKVPGKMKIAPLFLTKKTKRTAISAFDLDESSQDSSGQTQDCDVQFKAKRDFLM SGLPDLLKRQIAKRAAALDVYNAVSTSFQRVVHVQQKDDEYWLWHLKPPSCPLLTEFKELNTKV TDLSKCLVAFGEFSTLNPNPRSNPAVVLMRTRKEFTKEVRNLLLEEIKWSNPEFSLGKYFPLLL KKRIEHQVLCEGHGKQESGTEDMLWTEKYQPQNSNELVGNELAIKKLHSWLKDWKRRAELEERQ NLKGKRDEKEEDLSDGTDFKGSSDDEEYRLCNTVLITGPTGVGKTAAVYACAQELGFKIFEVNA SSQRSGRQILSQLREATQSHQVDKQGANSQKPCFFSNYNIGKSPKKLNSPGKVITSPRKLPPLS PKTGGQKRALLPKTLANYFKVSSKSNNNEDVGARPGNDKGVKNSSLEQRQIIQTKSTNANNSNI KDFGAEESNRKNATSLILFEEVDVIFDEDAGFLNAVKTFMATTKRPVILTTSDPTFSLVFDGCF EEINFNIPSLLNVASYLQVICLVENFRTDFKDFVTLLTANACDIRKSILYLQFWIRSGGGILEE RPLSHCRENSRNTLVCSEHESDANINSKNTKRNRVALPRCDTGCAEALFGLKNIACPSQDLLSS LKHKITTKEEWQRLIQLLTEFHMQNVDLLHSNLEFILPLPVNMIPEVRGAYGFPVTTQASAPAS MKLLNRKQSEDQPLRKSQKRKQKKMVTLDDSDLFDTSLDFSGELPSLSPAASSSEEDNTSRDRG SNPEIKTQNKGFKPHSLPQPPKTLAEKKCCVLVSHCLNSLSEFMENMSFVDALFTDPGEQNELG KSAFHWTNGKVKSGLCDEFSLENRDGWSPRSSEELKATAEALSFTKCSSTISKALESLNSCKQL GRDPTTELTFCVSQRSHDVCFRQSAANLYNADKRMAVIKSVFSTPSFLTLGNKQASIIDYLPTL RNICRTEKLKEQEKNKRRFLHYFEGIHLDIPEETITPLAADFP hide sequence

Ensembl Acc Id:

ENSRNOP00000028975 ⟸ ENSRNOT00000035642

RefSeq Acc Id:	XP_038943575 ⟸ XM_039087647
- Peptide Label:	isoform X2
- UniProtKB:	A6HHA2 (UniProtKB/TrEMBL)

Protein Domains

AAA+ ATPase ATPase AAA-type core

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A058-F1-model_v2	AlphaFold	D4A058	1-1834	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13697499

Promoter ID:

EPDNEW_R8022

Type:

single initiation site

Name:

Atad5_1

Description:

ATPase family, AAA domain containing 5

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	67,427,079 - 67,427,139	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1561464	AgrOrtholog
BioCyc Gene	G2FUF-23987	BioCyc
Ensembl Genes	ENSRNOG00000021903	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000035642	ENTREZGENE
	ENSRNOT00000035642.7	UniProtKB/TrEMBL
	ENSRNOT00000133075	ENTREZGENE
	ENSRNOT00000136626	ENTREZGENE
Gene3D-CATH	3.40.50.300	UniProtKB/TrEMBL
InterPro	AAA+_ATPase	UniProtKB/TrEMBL
	ATPase_AAA_core	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
NCBI Gene	303348	ENTREZGENE
PANTHER	ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 5	UniProtKB/TrEMBL
	CHROMOSOME TRANSMISSION FIDELITY FACTOR 18	UniProtKB/TrEMBL
Pfam	AAA	UniProtKB/TrEMBL
PhenoGen	Atad5	PhenoGen
RatGTEx	ENSRNOG00000021903	RatGTEx
SMART	AAA	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	A6HHA2	ENTREZGENE, UniProtKB/TrEMBL
	D4A058	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-29	Atad5	ATPase family, AAA domain containing 5	RGD1561464_predicted	similar to novel protein (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1561464_predicted	similar to novel protein (predicted)	LOC303348	similar to novel protein	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC303348	similar to novel protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD