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Gene: Fam167a (family with sequence similarity 167, member A) Rattus norvegicus

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Symbol:

Fam167a

Name:

family with sequence similarity 167, member A

RGD ID:

1561302

Description:

Orthologous to human FAM167A (family with sequence similarity 167 member A); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acetamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

hypothetical protein LOC498533; LOC498533; RGD1561302; similar to Hypothetical protein A030013D21; uncharacterized protein LOC498533

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	41,861,271 - 41,891,427 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	15	41,861,227 - 41,891,418 (+)	Ensembl				GRCr8
mRatBN7.2	15	37,685,221 - 37,715,472 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	37,700,919 - 37,715,469 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	15	39,553,577 - 39,568,079 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	40,704,376 - 40,718,880 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	39,161,540 - 39,176,088 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	46,613,761 - 46,643,771 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	46,613,810 - 46,643,772 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	15	50,391,387 - 50,405,856 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	15	42,719,193 - 42,734,086 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	15	37,384,033 - 37,398,670 (+)	NCBI		Celera
Cytogenetic Map	15	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

maturity-onset diabetes of the young type 11 (ISO)

Neurodevelopmental Disorders (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

4,4'-sulfonyldiphenol (ISO)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

aldehydo-D-glucose (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium dichloride (ISO)

chlordecone (ISO)

chloroacetaldehyde (ISO)

chloroprene (ISO)

cisplatin (ISO)

copper atom (EXP)

copper(0) (EXP)

cyclosporin A (ISO)

D-glucose (ISO)

DDE (ISO)

dexamethasone (ISO)

diazinon (ISO)

dioxygen (EXP,ISO)

ethanol (ISO)

fructose (ISO)

glucose (ISO)

lead diacetate (ISO)

methylparaben (ISO)

N-methyl-4-phenylpyridinium (EXP)

N-Nitrosopyrrolidine (ISO)

nickel atom (ISO)

O-methyleugenol (ISO)

okadaic acid (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

paraquat (EXP)

pirinixic acid (ISO)

potassium chromate (ISO)

rotenone (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

Soman (EXP)

sunitinib (ISO)

temozolomide (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

triphenyl phosphate (ISO)

triptonide (ISO)

tunicamycin (ISO)

valproic acid (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Fam167a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	41,861,271 - 41,891,427 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	15	41,861,227 - 41,891,418 (+)	Ensembl				GRCr8
mRatBN7.2	15	37,685,221 - 37,715,472 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	37,700,919 - 37,715,469 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	15	39,553,577 - 39,568,079 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	40,704,376 - 40,718,880 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	39,161,540 - 39,176,088 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	46,613,761 - 46,643,771 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	46,613,810 - 46,643,772 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	15	50,391,387 - 50,405,856 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	15	42,719,193 - 42,734,086 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	15	37,384,033 - 37,398,670 (+)	NCBI		Celera
Cytogenetic Map	15	p12	NCBI

FAM167A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	11,421,476 - 11,475,908 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	11,421,476 - 11,475,908 (-)	Ensembl			hg38	GRCh38
GRCh37	8	11,278,985 - 11,324,262 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	11,316,382 - 11,361,663 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	8	11,316,381 - 11,361,663	NCBI
Celera	8	10,407,815 - 10,453,655 (-)	NCBI		Celera
Cytogenetic Map	8	p23.1	NCBI
HuRef	8	10,209,873 - 10,255,620 (-)	NCBI		HuRef
CHM1_1	8	11,342,675 - 11,389,545 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	8	8,264,329 - 8,319,261 (+)	NCBI		T2T-CHM13v2.0

Fam167a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	63,673,843 - 63,702,951 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	63,673,843 - 63,702,947 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	14	63,436,394 - 63,465,502 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	63,436,394 - 63,465,498 (+)	Ensembl			mm10	GRCm38
MGSCv37	14	64,055,231 - 64,084,339 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	14	62,390,565 - 62,419,608 (+)	NCBI		MGSCv36	mm8
Celera	14	61,201,823 - 61,231,274 (+)	NCBI		Celera
Cytogenetic Map	14	D1	NCBI
cM Map	14	33.28	NCBI

Fam167a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	52,774,966 - 52,800,378 (-)	Ensembl
ChiLan1.0	NW_004955403	52,775,004 - 52,805,452 (-)	NCBI	ChiLan1.0	ChiLan1.0

FAM167A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	27,888,518 - 27,934,406 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	3,914,802 - 3,960,791 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	7,735,764 - 7,781,696 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

FAM167A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	26,437,250 - 26,485,177 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	26,447,271 - 26,485,185 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	27,093,066 - 27,137,791 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	26,590,756 - 26,635,472 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	26,600,794 - 26,638,477 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	26,543,425 - 26,590,329 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	26,440,541 - 26,485,460 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	26,592,254 - 26,637,409 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Fam167a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404943	5,417,729 - 5,448,297 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936675	3,137,556 - 3,168,213 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936675	3,137,886 - 3,168,330 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FAM167A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	14,627,230 - 14,667,455 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	14	14,627,242 - 14,667,494 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

FAM167A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	7,644,276 - 7,689,571 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	7,666,432 - 7,689,746 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666052	34,738,505 - 34,784,756 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fam167a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624758	25,087,870 - 25,103,589 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624758	25,087,788 - 25,114,556 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Variants

Variants in Fam167a
153 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	318
Count of miRNA genes:	193
Interacting mature miRNAs:	240
Transcripts:	ENSRNOT00000015055
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331729	Rf42	Renal function QTL 42	3.071		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	15	17362897	73690657	Rat
1641887	Alcrsp14	Alcohol response QTL 14			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	15	1	42356671	Rat
10755503	Bp391	Blood pressure QTL 391	2.37		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	15	20248600	37896129	Rat
1582227	Gluco30	Glucose level QTL 30	3.6	0.0003	blood glucose amount (VT:0000188)	absolute change in blood glucose level area under curve (CMO:0002034)	15	28030665	82262678	Rat
1582228	Epfw3	Epididymal fat weight QTL 3	4.1	0.0002	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	15	28030665	82262678	Rat
1578646	Bmd18	Bone mineral density QTL 18	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	15	22806240	98288169	Rat
1578647	Bmd17	Bone mineral density QTL 17	4		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	15	22806240	98288169	Rat
10401805	Kidm51	Kidney mass QTL 51			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	15	306329	45306329	Rat
2293686	Bmd36	Bone mineral density QTL 36	7.4	0.0001	femur strength trait (VT:0010010)	femoral neck ultimate force (CMO:0001703)	15	33611058	71477291	Rat
2317750	Glom26	Glomerulus QTL 26	4.3		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	15	12496141	65205939	Rat
2298549	Neuinf12	Neuroinflammation QTL 12	3.5		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	15	1	55302115	Rat
2293691	Bmd37	Bone mineral density QTL 37	6.6	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	15	33611058	71477291	Rat
2293688	Bss29	Bone structure and strength QTL 29	5.31	0.0001	femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	15	11111142	56111142	Rat
1582214	Stl21	Serum triglyceride level QTL 21	3.1	0.022	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	15	28030665	82262678	Rat
631273	Lecl2	Lens clarity QTL 2		0.001	lens clarity trait (VT:0001304)	age of onset/diagnosis of cataract (CMO:0001584)	15	10596089	55596089	Rat
2300167	Bmd63	Bone mineral density QTL 63	5.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	15	11111142	56111142	Rat
731170	Pur3	Proteinuria QTL 3	2.3	0.0005	urine protein amount (VT:0005160)	urine protein excretion rate (CMO:0000759)	15	1	41686771	Rat
738017	Hcas7	Hepatocarcinoma susceptibility QTL 7	2.91		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	15	2266368	46921453	Rat
152025253	Hrtrt24	Heart rate QTL 24	3.82		heart pumping trait (VT:2000009)		15	27885774	86257085	Rat
10054130	Srcrt8	Stress Responsive Cort QTL 8	2.18	0.0085	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	15	22117933	67117933	Rat
2300173	Bmd62	Bone mineral density QTL 62	12.8	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	15	11111142	56111142	Rat
2324620	Coatc3	Coat color QTL 3			coat/hair pigmentation trait (VT:0010463)	pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)	15	19856566	46187442	Rat
61424	Scl1	Serum cholesterol level QTL 1	7.7	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	15	16725528	80672115	Rat
1582251	Gluco24	Glucose level QTL 24	3.2	0.0008	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	15	5530756	50530756	Rat
1598828	Glom14	Glomerulus QTL 14	2.5		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	15	34054139	79054139	Rat
1582242	Gluco28	Glucose level QTL 28	3.3	0.0008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	15	28030665	82262678	Rat
1578660	Bss19	Bone structure and strength QTL 19	4.3		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	15	22806240	98288169	Rat
1582244	Bw79	Body weight QTL 79	4	0.0002	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	15	28030665	82262678	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	66	162	91	90	59	74	59	6	334	173	11	139	78	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109102	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434438	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_197786	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008770771	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008770772	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274552	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274553	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474023	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000015055 ⟹ ENSRNOP00000015055

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	41,861,227 - 41,891,418 (+)	Ensembl
mRatBN7.2 Ensembl	15	37,700,919 - 37,715,469 (+)	Ensembl
Rnor_6.0 Ensembl	15	46,613,810 - 46,643,772 (+)	Ensembl

RefSeq Acc Id:

NM_001109102 ⟹ NP_001102572

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	41,876,868 - 41,891,416 (+)	NCBI
mRatBN7.2	15	37,700,919 - 37,715,469 (+)	NCBI
Rnor_6.0	15	46,629,230 - 46,643,770 (+)	NCBI
Rnor_5.0	15	50,391,387 - 50,405,856 (+)	NCBI
RGSC_v3.4	15	42,719,193 - 42,734,086 (+)	RGD
Celera	15	37,384,033 - 37,398,670 (+)	RGD

Sequence:

show sequence

ACTAGAGAATGTCTGTGCCCCGGATCCAAGTGGAAGAAGTGGGTGAGAAAGACAGGCCAGCAGG
GGCAGCCATACCTCCCGACGACCACCTCCTCAGCCTGAAGGCCCTCACTGAGAAGCTGAGGCTG
GAGACCCGAAGACCTTCCTACCTGGAATGGCAAGCCAAGCTGGAGGAGCAGACCTGGCCTTTTC
CGAGGCCAGCTGCCCAGCAAGAGGCGAGTCTGGAGCAGGGAGCATGTGGGGGTGGAGAGCCTTT
GATGTCTCTAAGGGAGCCCAGAGAGCTTCTTCCACCTGCCAGGAGTGCCAGTGGGGGTGACAGG
CCACTGGCCACAGACAAGCTGGAAGGCTTCCGGAGTATCGACGAAGCCATCGCCTGGCTCAGAA
AGGAACTGGCAGAGATGCGGCTCCAGGACCAGCAGCTGGCCAGGCAGCTCATGCGCCTCCGAGG
AGACATCAACAAAATGAAGATCGAGCAGACCTGCCGCCTGCACAGGAGGATGCTCAATGATGCT
GCCTTTGAGCTGGAGGAGCGGGACGAGCTGTCCGACCTCTTCTGCGACTCCCCGCTGGCAGCCT
CCTTCAGCCTTTCCACCCCGCTCAAGCTCATTGGCGTCACCAAAATGAACATCAACTCCAGAAG
GTTCTCTCTCTGCTGAGAAGCCTTGGGATGGAATGGGAACCAGAGTCAAGGGGGAAAGAGAGAG
GGGGCTCAGACCAAGTTACCCAAAGTGGGTCTCCCTGAGGCCATGCTGGGGAGGGAAAGGCACC
AGGACCTGGTGGTAGTATGCCAGGGGCTTCAGCTTTCTATACCTGGGTCTTCGTGTTCCAGACC
CAAAGAGTCACAGACACTACGTAAGACAGGGCTCTCAGCAGGATCCCTGTGGCCTTCCCCTCTG
TGGCCTCTTTCCTGTGTCCTAGAATCACTGGTGCTATGATGTCGAATCCCATAGGGGACACTCC
TCCCATACCCCTGCCAAAGCTTGTTCTTATAGAAAACTCTACTCTAGGGGAGCTGAGATTATTA
GATTATGTAAATTATTCCCATCTCTCATGTTCTGTTACCACCTTCTTAGTGCTAGCTCTAATTG
CCCCTAAGTAGGAGACTCGGCAGAGATGTGGTAGGACAGGAAAACTTAAAGGAATAACAAGGTG
ACACGTGGGAAAGCAGGCTTCTCTTCCATGGCTGCCAGCATCCCTGGGAAGGAACTCTGCCCAG
CTACTTTGAACTTCAGCCCTGACACCACAAGGCCATGTTATTTCCAGCTTGCTCCATGACATAT
GACACATGTACTTTGTAGAGCTTTGGTAGAGCGACCCAGATGTCCTACTGTTTTCCGGCACAAT
CACTTCAGTTACTTCACTGCCACCCATAACCCTGGAGAATACCTAGCAGGCCACTGGCCACTGG
TGGCTAAACTAGGCAAGGTAGGATATAGATTCCCACAAGTGAACCTACAGTAGGGGCATGACAG
AGGCCTCCTGGTGGGACTAGATATTGTCACCTGTATCACCTTATCCTCAACACCAAAGACCCCA
GGTATCCCAGAAGTCCATCCTGAGTCTTTCCCAAAACTGTGCCTAACCTAAGCAATGGATTTCA
ATTGACCATGACTGTTAACTAATGCATTGCTAACTTGTTAATACCTGTCTGAGTCTTGTCCAAA
TGGAAAACTAGTTGAGTAAGCCAAACAGAGTTTGGGCTTTAGTTTTGAGAGTTTTCCCCTAGCA
TCAAGCTCAAGATCAGTAAAATGTCAAGCTCTTCAGTTCAGGGAAGACCTGGTATAGTGCACCT
GGCCACAATCCTCTTAACACAAGTTTCTCAGACTCCGGGTGTGTCTAGTGAGGCCTGCTTGTCT
CAGACTCTGGGTATGTCTAGTGAGGCCTGCTCGTGAGCAGAAAGGCAAAGTGAAGCTCAAAAAG
AGAATGACTTCCCTCTAGTTACCTGGATGCTCCATGGCTATAGAATATTAAGGTATAAAATTAC
TGTGAGTCAGGCCCAGATCTTCACCAACCAACTTGAACTCCAAAAGATGGCACTGATGTTCTGC
CAAACCCACAAGTTGCCAGCTTCTCTCTCCCTCCCTCTCAGCCCCTACTCATTCTTCTCTGGCC
TAGCAATCACTAGTATTGGAGGTATGGAGACACATGATGCCCAGATGGTGGACGCTTTTAGCTC
TCACCACTTGTCATAGCTCTGCAGTCTACATTGACTGTTCCTGTATATAACATTTCTTCCTCCT
AATAATCCCCGTGGGCTGTGTCCATACACGCCACAACACACCCAGGGAGAGACTGGAATGGAAA
GATAGTACTGAATGGTCTCTTCTTTGTGATTACAAAGAGCCAACAATTTGTATTTCCCTTTTTA
AAGGTAGAACAAGGTCACCAAGATTTCTTATAAGCCCTGAAGTCCAGAGGCCTTGACCCTAGTC
CCTTCCTTAGAGACTACACAAAACACTGCCAAGTCCTAAGAGACCTTTATTTCCCATCATTTCC
TGCTTCTGGTCACCCCACCCCACACCCCTGGTGAACAGAGAACACATAAGAGAAGGCCCATTCC
ATATTCTAAAAGCAATGCCAAACTGTAGGAAATTAAATCATTAGCCATGGTAATGTATGTCTTT
AATCCCAGCACTCAGGAGATGGAGGGAGGAAGATCAGGAGTTGAAGACTAACCTATGATACACA
GTAAGTTCTCCAAGCCATCCTGGGCCATAGGAGACCATGCCTCAAAACATAAAAGTCATCAGTC
ATTCCAGTAACTGATACCCTTAGCTTAAAGCAAAGCACAGTGCTCGACTTGGATGTGGTCAACA
ACTATGTGACTGAGCATTCTGCGCTCAACCAGCTGGGTAAGCACCCAGCCTCTTCCTCCTGCTT
CTATTCTCTGGGGAAACTGTCCTGGGCATGGGTTTGAATAGATTAGATGTCTCAGCTTAAGTTG
TTCATCCCAAAGGAATCTTATTTTGGGATGAGGAGGGGAATTGTGGAGGGGATTGAAAAGTTGG
AGGGGAAAGCTGTTTTGTCTTCTTACCTGCAGCCTAGTACCTGTTAGCTGCCTGCCTTCCGTGG
TGAGCTCAAACCATTAACTGTTCACTCTGACTGTAGAATTGCTGCAGAGATGTCTGTAGGCCAG
TGGCAGCATTCGCTGCCTTCCTCAGCCAGCTTCCTGCCTTACTGTATGTTCATTGTCCTGTTTG
GTGTTCCCTCATTAGCCATCTCCATCCGCCCTCCCCCAGGCGAGACATGAACTATCCACTGTGC
TGCCACAAGGTCATGTCCAATGCCTTCATGACCTCAGTAGCAATCACAGAGGCTTAGAGGGCCT
GGCCAGGCCTGGCCATAACCTGGCCTCATCCAAGATCTACCCCTGTAGCAATACCAAGTGCTAT
TACATAATCAATGGACAATTTACAGTTTTATTTTTATGATTATTTGTTTCTATATTACTGTAGA
AAAGTGAAATAAAAATATTTCAAAAGG

hide sequence

RefSeq Acc Id:

XM_008770771 ⟹ XP_008768993

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	41,861,271 - 41,891,427 (+)	NCBI
mRatBN7.2	15	37,685,221 - 37,715,472 (+)	NCBI
Rnor_6.0	15	46,613,761 - 46,643,771 (+)	NCBI

Sequence:

show sequence

AAGAACGGTGCGGGGAATTCTCAGCGATCTGGAGCTCGGGAGCTCGGGAGGCGGGAGCCGAGCT
CCGAGGGGCGGGCGCGGGCTGGCGGCGGGGACCGCGACAGCTCCGACGACGCGACCGGAGCTCA
AGAAGATATACAGCAAGAAGCATTGGATCCCAAGTGGAGGGGCAGCCATTCGCGCAGGACCCTG
CAAACCAAGCTGTCCTAGGAGAATGATGGTCTACTTTCTGCATTCTCTTTGCCTTTGACCTGCA
CACCTCCAGCAAGCACAGAGAGATCTCAGAGGAGTCTGTCCCAAGGATTCCTGCCGATGCTTGT
CTGATCCTGCCTTCTGGGAAGCATGGCCGCCACAGGATTACGGGACAAATATAGACCCTGAGAC
ACACAGCTGCTCTGAGAGGCACACTCTACAGCCTTGCTTGGCTCCAGGTGCTGCCAAGTCTTGA
AACTCACGCCCATCCCAACAATGCCTTCAGGAGCCATGGCCACAGCCGTATGAGACCATTACAG
AGCAGGACTTGACCTTGCTACACAGCAAGCCTCCCAAGTGGCCCCACCACCTCCCATGTCCAGC
TACCAGGGCAGACTAGAGAATGTCTGTGCCCCGGATCCAAGTGGAAGAAGTGGGTGAGAAAGAC
AGGCCAGCAGGGGCAGCCATACCTCCCGACGACCACCTCCTCAGCCTGAAGGCCCTCACTGAGA
AGCTGAGGCTGGAGACCCGAAGACCTTCCTACCTGGAATGGCAAGCCAAGCTGGAGGAGCAGAC
CTGGCCTTTTCCGAGGCCAGCTGCCCAGCAAGAGGCGAGTCTGGAGCAGGGAGCATGTGGGGGT
GGAGAGCCTTTGATGTCTCTAAGGGAGCCCAGAGAGCTTCTTCCACCTGCCAGGAGTGCCAGTG
GGGGTGACAGGCCACTGGCCACAGACAAGCTGGAAGGCTTCCGGAGTATCGACGAAGCCATCGC
CTGGCTCAGAAAGGAACTGGCAGAGATGCGGCTCCAGGACCAGCAGCTGGCCAGGCAGCTCATG
CGCCTCCGAGGAGACATCAACAAAATGAAGATCGAGCAGACCTGCCGCCTGCACAGGAGGATGC
TCAATGATGCTGCCTTTGAGCTGGAGGAGCGGGACGAGCTGTCCGACCTCTTCTGCGACTCCCC
GCTGGCAGCCTCCTTCAGCCTTTCCACCCCGCTCAAGCTCATTGGCGTCACCAAAATGAACATC
AACTCCAGAAGGTTCTCTCTCTGCTGAGAAGCCTTGGGATGGAATGGGAACCAGAGTCAAGGGG
GAAAGAGAGAGGGGGCTCAGACCAAGTTACCCAAAGTGGGTCTCCCTGAGGCCATGCTGGGGAG
GGAAAGGCACCAGGACCTGGTGGTAGTATGCCAGGGGCTTCAGCTTTCTATACCTGGGTCTTCG
TGTTCCAGACCCAAAGAGTCACAGACACTACGTAAGACAGGGCTCTCAGCAGGATCCCTGTGGC
CTTCCCCTCTGTGGCCTCTTTCCTGTGTCCTAGAATCACTGGTGCTATGATGTCGAATCCCATA
GGGGACACTCCTCCCATACCCCTGCCAAAGCTTGTTCTTATAGAAAACTCTACTCTAGGGGAGC
TGAGATTATTAGATTATGTAAATTATTCCCATCTCTCATGTTCTGTTACCACCTTCTTAGTGCT
AGCTCTAATTGCCCCTAAGTAGGAGACTCGGCAGAGATGTGGTAGGACAGGAAAACTTAAAGGA
ATAACAAGGTGACACGTGGGAAAGCAGGCTTCTCTTCCATGGCTGCCAGCATCCCTGGGAAGGA
ACTCTGCCCAGCTACTTTGAACTTCAGCCCTGACACCACAAGGCCATGTTATTTCCAGCTTGCT
CCATGACATATGACACATGTACTTTGTAGAGCTTTGGTAGAGCGACCCAGATGTCCTACTGTTT
TCCGGCACAATCACTTCAGTTACTTCACTGCCACCCATAACCCTGGAGAATACCTAGCAGGCCA
CTGGCCACTGGTGGCTAAACTAGGCAAGGTAGGATATAGATTCCCACAAGTGAACCTACAGTAG
GGGCATGACAGAGGCCTCCTGGTGGGACTAGATATTGTCACCTGTATCACCTTATCCTCAACAC
CAAAGACCCCAGGTATCCCAGAAGTCCATCCTGAGTCTTTCCCAAAACTGTGCCTAACCTAAGC
AATGGATTTCAATTGACCATGACTGTTAACTAATGCATTGCTAACTTGTTAATACCTGTCTGAG
TCTTGTCCAAATGGAAAACTAGTTGAGTAAGCCAAACAGAGTTTGGGCTTTAGTTTTGAGAGTT
TTCCCCTAGCATCAAGCTCAAGATCAGTAAAATGTCAAGCTCTTCAGTTCAGGGAAGACCTGGT
ATAGTGCACCTGGCCACAATCCTCTTAACACAAGTTTCTCAGACTCCGGGTGTGTCTAGTGAGG
CCTGCTTGTCTCAGACTCTGGGTATGTCTAGTGAGGCCTGCTCGTGAGCAGAAAGGCAAAGTGA
AGCTCAAAAAGAGAATGACTTCCCTCTAGTTACCTGGATGCTCCATGGCTATAGAATATTAAGG
TATAAAATTACTGTGAGTCAGGCCCAGATCTTCACCAACCAACTTGAACTCCAAAAGATGGCAC
TGATGTTCTGCCAAACCCACAAGTTGCCAGCTTCTCTCTCCCTCCCTCTCAGCCCCTACTCATT
CTTCTCTGGCCTAGCAATCACTAGTATTGGAGGTATGGAGACACATGATGCCCAGATGGTGGAC
GCTTTTAGCTCTCACCACTTGTCATAGCTCTGCAGTCTACATTGACTGTTCCTGTATATAACAT
TTCTTCCTCCTAATAATCCCCGTGGGCTGTGTCCATACACGCCACAACACACCCAGGGAGAGAC
TGGAATGGAAAGATAGTACTGAATGGTCTCTTCTTTGTGATTACAAAGAGCCAACAATTTGTAT
TTCCCTTTTTAAAGGTAGAACAAGGTCACCAAGATTTCTTATAAGCCCTGAAGTCCAGAGGCCT
TGACCCTAGTCCCTTCCTTAGAGACTACACAAAACACTGCCAAGTCCTAAGAGACCTTTATTTC
CCATCATTTCCTGCTTCTGGTCACCCCACCCCACACCCCTGGTGAACAGAGAACACATAAGAGA
AGGCCCATTCCATATTCTAAAAGCAATGCCAAACTGTAGGAAATTAAATCATTAGCCATGGTAA
TGTATGTCTTTAATCCCAGCACTCAGGAGATGGAGGGAGGAAGATCAGGAGTTGAAGACTAACC
TATGATACACAGTAAGTTCTCCAAGCCATCCTGGGCCATAGGAGACCATGCCTCAAAACATAAA
AGTCATCAGTCATTCCAGTAACTGATACCCTTAGCTTAAAGCAAAGCACAGTGCTCGACTTGGA
TGTGGTCAACAACTATGTGACTGAGCATTCTGCGCTCAACCAGCTGGGTAAGCACCCAGCCTCT
TCCTCCTGCTTCTATTCTCTGGGGAAACTGTCCTGGGCATGGGTTTGAATAGATTAGATGTCTC
AGCTTAAGTTGTTCATCCCAAAGGAATCTTATTTTGGGATGAGGAGGGGAATTGTGGAGGGGAT
TGAAAAGTTGGAGGGGAAAGCTGTTTTGTCTTCTTACCTGCAGCCTAGTACCTGTTAGCTGCCT
GCCTTCCGTGGTGAGCTCAAACCATTAACTGTTCACTCTGACTGTAGAATTGCTGCAGAGATGT
CTGTAGGCCAGTGGCAGCATTCGCTGCCTTCCTCAGCCAGCTTCCTGCCTTACTGTATGTTCAT
TGTCCTGTTTGGTGTTCCCTCATTAGCCATCTCCATCCGCCCTCCCCCAGGCGAGACATGAACT
ATCCACTGTGCTGCCACAAGGTCATGTCCAATGCCTTCATGACCTCAGTAGCAATCACAGAGGC
TTAGAGGGCCTGGCCAGGCCTGGCCATAACCTGGCCTCATCCAAGATCTACCCCTGTAGCAATA
CCAAGTGCTATTACATAATCAATGGACAATTTACAGTTTTATTTTTATGATTATTTGTTTCTAT
ATTACTGTAGAAAAGTGAAATAAAAATATTTCAAAAGGA

hide sequence

RefSeq Acc Id:

XM_063274552 ⟹ XP_063130622

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	41,875,716 - 41,891,427 (+)	NCBI

RefSeq Acc Id:

XM_063274553 ⟹ XP_063130623

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	41,861,345 - 41,883,532 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102572	(Get FASTA)	NCBI Sequence Viewer
	NP_001421367	(Get FASTA)	NCBI Sequence Viewer
	XP_008768993	(Get FASTA)	NCBI Sequence Viewer
	XP_063130622	(Get FASTA)	NCBI Sequence Viewer
	XP_063130623	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL85322	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000015055
	ENSRNOP00000015055.2

RefSeq Acc Id:

NP_001102572 ⟸ NM_001109102

- UniProtKB:

D3ZQX1 (UniProtKB/TrEMBL), A6K6G2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSVPRIQVEEVGEKDRPAGAAIPPDDHLLSLKALTEKLRLETRRPSYLEWQAKLEEQTWPFPRP
AAQQEASLEQGACGGGEPLMSLREPRELLPPARSASGGDRPLATDKLEGFRSIDEAIAWLRKEL
AEMRLQDQQLARQLMRLRGDINKMKIEQTCRLHRRMLNDAAFELEERDELSDLFCDSPLAASFS
LSTPLKLIGVTKMNINSRRFSLC

hide sequence

RefSeq Acc Id:

XP_008768993 ⟸ XM_008770771

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSVPRIQVEEVGEKDRPAGAAIPPDDHLLSLKALTEKLRLETRRPSYLEWQAKLEEQTWPFPRP
AAQQEASLEQGACGGGEPLMSLREPRELLPPARSASGGDRPLATDKLEGFRSIDEAIAWLRKEL
AEMRLQDQQLARQLMRLRGDINKMKIEQTCRLHRRMLNDAAFELEERDELSDLFCDSPLAASFS
LSTPLKLIGVTKMNINSRRFSLC

hide sequence

Ensembl Acc Id:

ENSRNOP00000015055 ⟸ ENSRNOT00000015055

RefSeq Acc Id:	XP_063130623 ⟸ XM_063274553
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063130622 ⟸ XM_063274552
- Peptide Label:	isoform X1

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZQX1-F1-model_v2	AlphaFold	D3ZQX1	1-215	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699778

Promoter ID:

EPDNEW_R10300

Type:

single initiation site

Name:

Fam167a_1

Description:

family with sequence similarity 167, member A

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	15	46,613,784 - 46,613,844	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1561302	AgrOrtholog
BioCyc Gene	G2FUF-13422	BioCyc
Ensembl Genes	ENSRNOG00000011316	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000015055	ENTREZGENE
	ENSRNOT00000015055.5	UniProtKB/TrEMBL
InterPro	FAM167	UniProtKB/TrEMBL
	FAM167_domain	UniProtKB/TrEMBL
KEGG Report	rno:498533	UniProtKB/TrEMBL
NCBI Gene	498533	ENTREZGENE
PANTHER	PROTEIN FAM167A	UniProtKB/TrEMBL
	PROTEIN FAM167A	UniProtKB/TrEMBL
Pfam	DUF3259	UniProtKB/TrEMBL
PhenoGen	Fam167a	PhenoGen
RatGTEx	ENSRNOG00000011316	RatGTEx
UniProt	A6K6G2	ENTREZGENE, UniProtKB/TrEMBL
	D3ZQX1	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-09-09	Fam167a	family with sequence similarity 167, member A	RGD1561302	similar to Hypothetical protein A030013D21	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1561302	similar to Hypothetical protein A030013D21	RGD1561302_predicted	similar to Hypothetical protein A030013D21 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1561302_predicted	similar to Hypothetical protein A030013D21 (predicted)	LOC498533	similar to Hypothetical protein A030013D21	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC498533	similar to Hypothetical protein A030013D21			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar