Fam32a (family with sequence similarity 32, member A) - Rat Genome Database

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Gene: Fam32a (family with sequence similarity 32, member A) Rattus norvegicus
Analyze
Symbol: Fam32a
Name: family with sequence similarity 32, member A
RGD ID: 1561287
Description: Predicted to be involved in apoptotic process. Predicted to be located in nucleoplasm. Predicted to be active in nucleolus. Orthologous to human FAM32A (family with sequence similarity 32 member A); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC498600; LOC498600; OTAG-12; ovarian tumor associated gene 12; RGD1561287; similar to RIKEN cDNA 2510049I19; uncharacterized protein LOC498600
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81617,637,078 - 17,641,448 (-)NCBIGRCr8
mRatBN7.21617,603,054 - 17,607,376 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1617,603,946 - 17,607,398 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1617,669,146 - 17,673,471 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01618,801,181 - 18,805,504 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01617,722,071 - 17,726,396 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01619,304,522 - 19,308,842 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1619,304,529 - 19,308,842 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01619,164,833 - 19,169,377 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41618,025,468 - 18,029,788 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1617,820,419 - 17,824,739 (-)NCBICelera
Cytogenetic Map16p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleolus  (IBA,ISO)
nucleoplasm  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:12477932   PMID:22658674  


Genomics

Comparative Map Data
Fam32a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81617,637,078 - 17,641,448 (-)NCBIGRCr8
mRatBN7.21617,603,054 - 17,607,376 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1617,603,946 - 17,607,398 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1617,669,146 - 17,673,471 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01618,801,181 - 18,805,504 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01617,722,071 - 17,726,396 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01619,304,522 - 19,308,842 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1619,304,529 - 19,308,842 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01619,164,833 - 19,169,377 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41618,025,468 - 18,029,788 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1617,820,419 - 17,824,739 (-)NCBICelera
Cytogenetic Map16p14NCBI
FAM32A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381916,185,410 - 16,192,046 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1916,185,380 - 16,192,046 (+)EnsemblGRCh38hg38GRCh38
GRCh371916,296,221 - 16,302,857 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361916,157,235 - 16,163,857 (+)NCBINCBI36Build 36hg18NCBI36
Build 341916,157,234 - 16,163,855NCBI
Celera1916,198,233 - 16,204,860 (+)NCBICelera
Cytogenetic Map19p13.11NCBI
HuRef1915,867,006 - 15,873,595 (+)NCBIHuRef
CHM1_11916,295,773 - 16,302,420 (+)NCBICHM1_1
T2T-CHM13v2.01916,319,478 - 16,326,117 (+)NCBIT2T-CHM13v2.0
Fam32a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39872,973,589 - 72,978,878 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl872,973,574 - 72,978,262 (+)EnsemblGRCm39 Ensembl
GRCm38872,219,745 - 72,225,034 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl872,219,730 - 72,224,418 (+)EnsemblGRCm38mm10GRCm38
MGSCv37874,743,629 - 74,747,674 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36875,148,719 - 75,152,764 (+)NCBIMGSCv36mm8
Celera876,576,082 - 76,580,126 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map834.9NCBI
Fam32a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555241,366,531 - 1,370,400 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555241,366,503 - 1,370,404 (-)NCBIChiLan1.0ChiLan1.0
FAM32A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22021,054,686 - 21,061,450 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11920,060,537 - 20,067,239 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01915,672,703 - 15,679,404 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11916,653,456 - 16,660,106 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1916,653,456 - 16,660,106 (+)Ensemblpanpan1.1panPan2
FAM32A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12046,292,497 - 46,297,991 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl348,154,756 - 8,155,645 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2046,292,497 - 46,298,004 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2046,207,010 - 46,212,504 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02046,780,949 - 46,786,444 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2046,780,949 - 46,786,457 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12046,015,591 - 46,021,085 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02046,426,052 - 46,431,544 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02046,703,408 - 46,708,902 (-)NCBIUU_Cfam_GSD_1.0
Fam32a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118204,801,264 - 204,804,960 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365964,351,183 - 4,354,114 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365964,350,403 - 4,354,061 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM32A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl261,388,639 - 61,394,287 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1261,388,628 - 61,394,251 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2261,020,921 - 61,026,534 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FAM32A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1614,691,042 - 14,697,657 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl614,691,042 - 14,697,665 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660744,794,926 - 4,801,573 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam32a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249081,069,576 - 1,072,888 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249081,069,576 - 1,072,969 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Fam32a
16 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:214
Count of miRNA genes:151
Interacting mature miRNAs:175
Transcripts:ENSRNOT00000019556
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631561Hcuc2Hepatic copper content QTL 22.8liver copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16126727669Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133418960Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16132139025Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16422760946975965Rat
631517Scl9Serum cholesterol level QTL 93.3blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)161572643321034895Rat
9590151Scort8Serum corticosterone level QTL 88.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)16130836262Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760949227609Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16422760948972724Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126727669Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16422760943025077Rat
1600369Hcas8Hepatocarcinoma susceptibility QTL 8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)16122477621Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139533930Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16338015043025077Rat
1300133Rf24Renal function QTL 243.64blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)16338015021361552Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126727669Rat
61372Bp40Blood pressure QTL 402.2blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)16422773017696785Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683223646053497Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16143534949Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat

Markers in Region
RH131952  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21617,604,016 - 17,604,221 (+)MAPPERmRatBN7.2
Rnor_6.01619,305,483 - 19,305,687NCBIRnor6.0
Rnor_5.01619,165,794 - 19,165,998UniSTSRnor5.0
RGSC_v3.41618,026,429 - 18,026,633UniSTSRGSC3.4
Celera1617,821,380 - 17,821,584UniSTS
RH 3.4 Map16178.5UniSTS
Cytogenetic Map16p14UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000019556   ⟹   ENSRNOP00000019556
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1619,304,529 - 19,308,842 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000101185   ⟹   ENSRNOP00000092918
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1617,603,946 - 17,607,398 (-)Ensembl
RefSeq Acc Id: NM_001128078   ⟹   NP_001121550
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81617,637,078 - 17,641,399 (-)NCBI
mRatBN7.21617,603,054 - 17,607,376 (-)NCBI
Rnor_6.01619,304,522 - 19,308,842 (-)NCBI
Rnor_5.01619,164,833 - 19,169,377 (-)NCBI
RGSC_v3.41618,025,468 - 18,029,788 (-)RGD
Celera1617,820,419 - 17,824,739 (-)RGD
Sequence:
RefSeq Acc Id: XM_063275632   ⟹   XP_063131702
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81617,637,985 - 17,641,448 (-)NCBI
RefSeq Acc Id: XM_063275633   ⟹   XP_063131703
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81617,637,985 - 17,641,448 (-)NCBI
RefSeq Acc Id: NP_001121550   ⟸   NM_001128078
- UniProtKB: B2RYG1 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000019556   ⟸   ENSRNOT00000019556
Ensembl Acc Id: ENSRNOP00000092918   ⟸   ENSRNOT00000101185
RefSeq Acc Id: XP_063131703   ⟸   XM_063275633
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063131702   ⟸   XM_063275632
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AF17 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B2RYG1-F1-model_v2 AlphaFold B2RYG1 1-112 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699987
Promoter ID:EPDNEW_R10510
Type:initiation region
Name:Fam32a_1
Description:family with sequence similarity 32, member A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01619,308,850 - 19,308,910EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561287 AgrOrtholog
BioCyc Gene G2FUF-11877 BioCyc
Ensembl Genes ENSRNOG00000039528 Ensembl
  ENSRNOG00000066630 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00055010259 UniProtKB/Swiss-Prot
  ENSRNOG00060010195 UniProtKB/Swiss-Prot
  ENSRNOG00065022023 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000101185.1 UniProtKB/TrEMBL
  ENSRNOT00055017318 UniProtKB/Swiss-Prot
  ENSRNOT00060017207 UniProtKB/Swiss-Prot
  ENSRNOT00065037518 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7932317 IMAGE-MGC_LOAD
InterPro FAM32A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:498600 UniProtKB/Swiss-Prot
MGC_CLONE MGC:188529 IMAGE-MGC_LOAD
NCBI Gene 498600 ENTREZGENE
PANTHER PROTEIN FAM32A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR13282 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF1754 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Fam32a PhenoGen
RatGTEx ENSRNOG00000039528 RatGTEx
  ENSRNOG00000066630 RatGTEx
  ENSRNOG00055010259 RatGTEx
  ENSRNOG00060010195 RatGTEx
  ENSRNOG00065022023 RatGTEx
UniProt A0A8I6AF17 ENTREZGENE, UniProtKB/TrEMBL
  B2RYG1 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-07 Fam32a  family with sequence similarity 32, member A  RGD1561287_predicted  similar to RIKEN cDNA 2510049I19 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1561287_predicted  similar to RIKEN cDNA 2510049I19 (predicted)  LOC498600  similar to RIKEN cDNA 2510049I19  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC498600  similar to RIKEN cDNA 2510049I19      Symbol and Name status set to provisional 70820 PROVISIONAL