Snrnp200 (small nuclear ribonucleoprotein U5 subunit 200) - Rat Genome Database

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Gene: Snrnp200 (small nuclear ribonucleoprotein U5 subunit 200) Rattus norvegicus
Analyze
Symbol: Snrnp200
Name: small nuclear ribonucleoprotein U5 subunit 200
RGD ID: 1561120
Description: Predicted to enable RNA helicase activity and identical protein binding activity. Predicted to be involved in spliceosome conformational change to release U4 (or U4atac) and U1 (or U11). Predicted to be located in nucleoplasm. Predicted to be part of spliceosomal complex and spliceosomal snRNP complex. Human ortholog(s) of this gene implicated in retinitis pigmentosa and retinitis pigmentosa 33. Orthologous to human SNRNP200 (small nuclear ribonucleoprotein U5 subunit 200); PARTICIPATES IN spliceosome pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; azoxystrobin.
Type: protein-coding
RefSeq Status: INFERRED
Previously known as: activating signal cointegrator 1 complex subunit 3-like 1; Ascc3l1; BRR2 homolog; LOC296126; MGC116386; similar to U5 snRNP-specific protein, 200 kDa; small nuclear ribonucleoprotein 200 (U5); U5 small nuclear ribonucleoprotein 200 kDa helicase; U5 snRNP-specific 200 kDa protein; U5-200KD
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83134,882,173 - 134,911,512 (+)NCBIGRCr8
mRatBN7.23114,428,854 - 114,458,194 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3114,428,854 - 114,458,182 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3118,320,397 - 118,349,747 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03126,915,943 - 126,945,291 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03124,576,324 - 124,605,671 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03119,640,324 - 119,669,651 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3119,640,298 - 119,669,639 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03126,165,542 - 126,194,869 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43114,708,628 - 114,738,549 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3113,269,406 - 113,298,872 (+)NCBICelera
Cytogenetic Map3q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functions of the DExD/H-box proteins in nuclear pre-mRNA splicing. Chang TH, etal., Biochim Biophys Acta. 2013 Aug;1829(8):764-74. doi: 10.1016/j.bbagrm.2013.02.006. Epub 2013 Feb 21.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Mutations in ASCC3L1 on 2q11.2 are associated with autosomal dominant retinitis pigmentosa in a Chinese family. Li N, etal., Invest Ophthalmol Vis Sci. 2010 Feb;51(2):1036-43. doi: 10.1167/iovs.09-3725. Epub 2009 Aug 26.
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
9. Structural analyses of the pre-mRNA splicing machinery. Zhang L, etal., Protein Sci. 2013 Jun;22(6):677-92. doi: 10.1002/pro.2266. Epub 2013 May 8.
10. Autosomal-dominant retinitis pigmentosa caused by a mutation in SNRNP200, a gene required for unwinding of U4/U6 snRNAs. Zhao C, etal., Am J Hum Genet. 2009 Nov;85(5):617-27. doi: 10.1016/j.ajhg.2009.09.020. Epub 2009 Oct 29.
Additional References at PubMed
PMID:8670905   PMID:9539711   PMID:11991638   PMID:16210410   PMID:22365833   PMID:22658674   PMID:22681889   PMID:22720776   PMID:23045696   PMID:23793891   PMID:29301961   PMID:29361316  


Genomics

Comparative Map Data
Snrnp200
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83134,882,173 - 134,911,512 (+)NCBIGRCr8
mRatBN7.23114,428,854 - 114,458,194 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3114,428,854 - 114,458,182 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3118,320,397 - 118,349,747 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03126,915,943 - 126,945,291 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03124,576,324 - 124,605,671 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03119,640,324 - 119,669,651 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3119,640,298 - 119,669,639 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03126,165,542 - 126,194,869 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43114,708,628 - 114,738,549 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3113,269,406 - 113,298,872 (+)NCBICelera
Cytogenetic Map3q36NCBI
SNRNP200
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38296,274,338 - 96,305,546 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl296,274,338 - 96,321,271 (-)EnsemblGRCh38hg38GRCh38
GRCh37296,940,076 - 96,971,284 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36296,303,801 - 96,334,988 (-)NCBINCBI36Build 36hg18NCBI36
Build 34296,361,948 - 96,393,135NCBI
Celera291,381,262 - 91,412,485 (-)NCBICelera
Cytogenetic Map2q11.2NCBI
HuRef290,901,571 - 90,932,785 (-)NCBIHuRef
CHM1_1296,944,413 - 96,975,645 (-)NCBICHM1_1
T2T-CHM13v2.0296,780,946 - 96,812,154 (-)NCBIT2T-CHM13v2.0
Snrnp200
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392127,050,306 - 127,082,373 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2127,050,306 - 127,082,371 (+)EnsemblGRCm39 Ensembl
GRCm382127,208,386 - 127,240,453 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2127,208,386 - 127,240,451 (+)EnsemblGRCm38mm10GRCm38
MGSCv372127,034,140 - 127,066,187 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362126,899,845 - 126,931,892 (+)NCBIMGSCv36mm8
Celera2128,447,628 - 128,479,812 (+)NCBICelera
Cytogenetic Map2F1NCBI
cM Map261.84NCBI
Snrnp200
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554703,828,943 - 3,856,236 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554703,828,943 - 3,856,059 (-)NCBIChiLan1.0ChiLan1.0
SNRNP200
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21232,003,221 - 32,034,115 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A32,005,981 - 32,036,875 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A103,010,083 - 103,040,958 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A97,197,137 - 97,228,511 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A97,197,137 - 97,228,511 (-)Ensemblpanpan1.1panPan2
SNRNP200
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11734,472,638 - 34,505,332 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1734,472,767 - 34,505,333 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1734,243,105 - 34,275,448 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01735,244,241 - 35,276,691 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1735,244,268 - 35,277,056 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11734,373,226 - 34,405,881 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01734,432,063 - 34,474,517 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01734,648,453 - 34,681,099 (+)NCBIUU_Cfam_GSD_1.0
SNRNP200
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl346,929,136 - 46,960,957 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1346,929,066 - 46,960,420 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2349,025,370 - 49,042,952 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SNRNP200
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.114693,873 - 724,226 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl14694,126 - 724,208 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041168,120,462 - 168,150,703 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snrnp200
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247492,351,373 - 2,378,159 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247492,351,476 - 2,378,047 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Snrnp200
216 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:94
Count of miRNA genes:81
Interacting mature miRNAs:87
Transcripts:ENSRNOT00000043895
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)370653097121056321Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)353184593115665732Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
1582216Bw65Body weight QTL 656.3body mass (VT:0001259)body weight (CMO:0000012)3102200529115665732Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1582219Bw63Body weight QTL 633.80.001body mass (VT:0001259)body weight (CMO:0000012)396127817115665732Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)364655305115665732Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)364655305115665732Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3112681431157681431Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)361017749121056321Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)350437504115638231Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)373376539118376539Rat
8694437Bw167Body weight QTL 16722.460.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)391797474136797474Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)343827364121056321Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)397084464142084464Rat
631649Bp123Blood pressure QTL 1233.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)389772419134772419Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)394856903159898684Rat
619618Rf3Renal disease susceptibility QTL 36.50.001urine albumin amount (VT:0002871)urine albumin excretion rate to body weight ratio (CMO:0001270)3107693393152693393Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)370348525121056321Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
631665Bw8Body weight QTL 85.5body mass (VT:0001259)body weight (CMO:0000012)350437042119183768Rat
1331758Bp207Blood pressure QTL 2072.848arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3112287552135181505Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)397551417147415807Rat
724532Cm17Cardiac mass QTL 172heart mass (VT:0007028)calculated heart weight (CMO:0000073)395735366140735366Rat

Markers in Region
BE119847  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23114,448,136 - 114,448,320 (+)MAPPERmRatBN7.2
Rnor_6.03119,659,594 - 119,659,777NCBIRnor6.0
Rnor_5.03126,184,812 - 126,184,995UniSTSRnor5.0
RGSC_v3.43114,728,492 - 114,728,675UniSTSRGSC3.4
Celera3113,288,815 - 113,288,998UniSTS
RH 3.4 Map3986.9UniSTS
Cytogenetic Map3q36UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000043895   ⟹   ENSRNOP00000048598
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3114,428,854 - 114,458,182 (+)Ensembl
Rnor_6.0 Ensembl3119,640,298 - 119,669,639 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000096127   ⟹   ENSRNOP00000097906
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3114,428,854 - 114,458,182 (+)Ensembl
RefSeq Acc Id: NM_001037766   ⟹   NP_001032855
RefSeq Status: INFERRED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83134,882,173 - 134,911,512 (+)NCBI
mRatBN7.23114,428,854 - 114,458,194 (+)NCBI
Rnor_6.03119,640,324 - 119,669,651 (+)NCBI
Rnor_5.03126,165,542 - 126,194,869 (+)NCBI
RGSC_v3.43114,708,628 - 114,738,549 (+)RGD
Celera3113,269,406 - 113,298,872 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001032855 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH99211 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000048598
  ENSRNOP00000048598.4
  ENSRNOP00000097906.1
  ENSRNOP00055006485
  ENSRNOP00060019985
  ENSRNOP00065016289
GenBank Protein F1LNJ2 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001032855   ⟸   NM_001037766
- UniProtKB: F1LNJ2 (UniProtKB/Swiss-Prot),   M3ZCQ2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000048598   ⟸   ENSRNOT00000043895
Ensembl Acc Id: ENSRNOP00000097906   ⟸   ENSRNOT00000096127
Protein Domains
Helicase ATP-binding   Helicase C-terminal   SEC63

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LNJ2-F1-model_v2 AlphaFold F1LNJ2 1-2139 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692398
Promoter ID:EPDNEW_R2923
Type:initiation region
Name:Snrnp200_1
Description:small nuclear ribonucleoprotein U5 subunit 200
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03119,640,322 - 119,640,382EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561120 AgrOrtholog
BioCyc Gene G2FUF-48001 BioCyc
Ensembl Genes ENSRNOG00000012157 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055005304 UniProtKB/Swiss-Prot
  ENSRNOG00060014656 UniProtKB/Swiss-Prot
  ENSRNOG00065012901 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000043895 UniProtKB/TrEMBL
  ENSRNOT00000043895.5 UniProtKB/Swiss-Prot
  ENSRNOT00000096127.1 UniProtKB/TrEMBL
  ENSRNOT00055008540 UniProtKB/Swiss-Prot
  ENSRNOT00060025090 UniProtKB/Swiss-Prot
  ENSRNOT00065021118 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.60.40.150 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  5' to 3' exonuclease, C-terminal subdomain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sec63 N-terminal domain-like domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Brr2_helicase_PWI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BRR2_plug UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DEAD/DEAH_box_helicase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Hel308/SKI2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Helicase_ATP-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Helicase_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_E-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sec63-dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:296126 UniProtKB/TrEMBL
NCBI Gene 296126 ENTREZGENE
PANTHER DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  U5 SMALL NUCLEAR RIBONUCLEOPROTEIN HELICASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam BRR2_plug UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DEAD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Helicase_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Helicase_PWI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sec63 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Snrnp200 PhenoGen
PIRSF BRR2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE HELICASE_ATP_BIND_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HELICASE_CTER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000012157 RatGTEx
  ENSRNOG00055005304 RatGTEx
  ENSRNOG00060014656 RatGTEx
  ENSRNOG00065012901 RatGTEx
SMART DEXDc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HELICc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sec63 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Sec63 N-terminal domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF46785 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF81296 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6ATU8_RAT UniProtKB/TrEMBL
  F1LNJ2 ENTREZGENE
  M3ZCQ2 ENTREZGENE, UniProtKB/TrEMBL
  U520_RAT UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-16 Snrnp200  small nuclear ribonucleoprotein U5 subunit 200  Snrnp200  small nuclear ribonucleoprotein 200 (U5)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-13 Snrnp200  small nuclear ribonucleoprotein 200 (U5)  Ascc3l1  activating signal cointegrator 1 complex subunit 3-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Ascc3l1  activating signal cointegrator 1 complex subunit 3-like 1  LOC296126  similar to U5 snRNP-specific protein, 200 kDa  Symbol and Name updated 1299863 APPROVED
2006-02-09 LOC296126  similar to U5 snRNP-specific protein, 200 kDa      Symbol and Name status set to provisional 70820 PROVISIONAL