Rbpms (RNA binding protein, mRNA processing factor) - Rat Genome Database

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Gene: Rbpms (RNA binding protein, mRNA processing factor) Rattus norvegicus
Analyze
Symbol: Rbpms
Name: RNA binding protein, mRNA processing factor
RGD ID: 1561067
Description: Enables identical protein binding activity; molecular adaptor activity; and pre-mRNA binding activity. Involved in protein-containing complex assembly and regulation of alternative mRNA splicing, via spliceosome. Predicted to be located in cytoplasmic stress granule; cytosol; and nucleus. Orthologous to human RBPMS (RNA binding protein, mRNA processing factor); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; aconitine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC498642; RBP-MS; RGD1561067; RNA binding protein gene with multiple splicing; RNA binding protein with multiple splicing; RNA-binding protein with multiple splicing; similar to RNA binding protein gene with multiple splicing
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81664,942,159 - 65,098,504 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1664,942,530 - 65,098,503 (+)EnsemblGRCr8
mRatBN7.21658,239,370 - 58,395,424 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1658,239,474 - 58,395,426 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1663,579,457 - 63,713,962 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01666,993,105 - 67,127,638 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01662,213,707 - 62,348,200 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01661,954,569 - 62,109,998 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1661,954,590 - 62,096,497 (+)Ensemblrn6Rnor6.0
Rnor_5.01661,618,879 - 61,774,268 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41662,009,626 - 62,163,466 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1656,277,529 - 56,412,446 (+)NCBICelera
Cytogenetic Map16q12.2-q12.3NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3-dimethoxynaphthalene-1,4-dione  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
aconitine  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (EXP,ISO)
alpha-Zearalanol  (EXP)
amiodarone  (ISO)
antimony(0)  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
azoxystrobin  (EXP)
Benoxacor  (ISO)
benzo[a]pyrene  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
Butylbenzyl phthalate  (ISO)
C60 fullerene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calyculin A  (ISO)
carbon nanotube  (ISO)
carnosic acid  (ISO)
chlordecone  (ISO)
chlorpyrifos  (EXP,ISO)
cisplatin  (EXP,ISO)
clofibrate  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (EXP)
cyclophosphamide  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dextran sulfate  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP,ISO)
dichloroacetic acid  (ISO)
dicrotophos  (ISO)
diethyl phthalate  (ISO)
diisobutyl phthalate  (ISO)
diisononyl phthalate  (ISO)
dioxygen  (ISO)
dipotassium bis[mu-tartrato(4-)]diantimonate(2-) trihydrate  (ISO)
diquat  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
entinostat  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
Evodiamine  (ISO)
fenthion  (ISO)
finasteride  (EXP)
fonofos  (ISO)
fulvestrant  (ISO)
glyphosate  (EXP)
hydrogen peroxide  (ISO)
imidacloprid  (EXP)
indometacin  (ISO)
isotretinoin  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
mercury atom  (ISO)
mercury(0)  (ISO)
methidathion  (ISO)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
mitomycin C  (ISO)
Monobutylphthalate  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N-methylformamide  (ISO)
N-nitrosodimethylamine  (ISO)
nefazodone  (EXP)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP)
parathion  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
permethrin  (EXP)
phenobarbital  (ISO)
phenylarsine oxide  (ISO)
pirinixic acid  (ISO)
propiconazole  (ISO)
rotenone  (EXP,ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
tamoxifen  (ISO)
terbufos  (ISO)
tetrachloromethane  (EXP,ISO)
thiabendazole  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
tremolite asbestos  (ISO)
tributylstannane  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
triptonide  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)
vancomycin  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA,ISO)
cytoplasmic stress granule  (IEA,ISO)
cytosol  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IEA,ISO)
P-body  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Cell-type specific regulator RBPMS switches alternative splicing via higher-order oligomerization and heterotypic interactions with other splicing regulators. Yang Y, etal., Nucleic Acids Res. 2023 Oct 13;51(18):9961-9982. doi: 10.1093/nar/gkad652.
Additional References at PubMed
PMID:17099224   PMID:19737887   PMID:22658674   PMID:26347403   PMID:31283468  


Genomics

Comparative Map Data
Rbpms
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81664,942,159 - 65,098,504 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1664,942,530 - 65,098,503 (+)EnsemblGRCr8
mRatBN7.21658,239,370 - 58,395,424 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1658,239,474 - 58,395,426 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1663,579,457 - 63,713,962 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01666,993,105 - 67,127,638 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01662,213,707 - 62,348,200 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01661,954,569 - 62,109,998 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1661,954,590 - 62,096,497 (+)Ensemblrn6Rnor6.0
Rnor_5.01661,618,879 - 61,774,268 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41662,009,626 - 62,163,466 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1656,277,529 - 56,412,446 (+)NCBICelera
Cytogenetic Map16q12.2-q12.3NCBI
RBPMS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38830,384,541 - 30,572,256 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl830,384,416 - 30,572,256 (+)Ensemblhg38GRCh38
GRCh37830,242,057 - 30,429,773 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36830,361,486 - 30,549,276 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34830,361,485 - 30,549,276NCBI
Celera829,200,833 - 29,388,215 (+)NCBICelera
Cytogenetic Map8p12NCBI
HuRef828,786,611 - 28,974,229 (+)NCBIHuRef
CHM1_1830,444,486 - 30,631,917 (+)NCBICHM1_1
T2T-CHM13v2.0830,663,428 - 30,851,701 (+)NCBIT2T-CHM13v2.0
Rbpms
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39834,272,671 - 34,419,925 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl834,272,671 - 34,419,891 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38833,782,643 - 33,929,922 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl833,782,643 - 33,929,863 (-)Ensemblmm10GRCm38
MGSCv37834,893,116 - 35,040,313 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36835,249,999 - 35,395,753 (-)NCBIMGSCv36mm8
Celera836,420,353 - 36,511,505 (-)NCBICelera
Cytogenetic Map8A4NCBI
cM Map820.85NCBI
Rbpms
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554636,901,263 - 6,988,870 (+)Ensembl
ChiLan1.0NW_0049554636,817,570 - 6,973,393 (+)NCBIChiLan1.0ChiLan1.0
RBPMS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2748,944,932 - 49,134,955 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1824,660,519 - 24,850,850 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0829,685,311 - 29,875,614 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1826,876,710 - 27,065,387 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl826,965,830 - 27,065,387 (+)EnsemblpanPan2panpan1.1
RBPMS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11633,788,675 - 33,961,595 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1633,788,781 - 33,960,286 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1634,250,794 - 34,424,085 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01635,817,904 - 35,991,250 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1635,818,031 - 35,990,964 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11633,916,132 - 34,089,651 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01634,486,116 - 34,659,162 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01634,606,907 - 34,780,115 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rbpms
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494356,959,279 - 57,127,286 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936792236,503 - 404,510 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936792236,509 - 404,510 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBPMS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1554,539,238 - 54,725,583 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11554,538,583 - 54,725,605 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21561,933,646 - 62,143,596 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RBPMS
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1828,496,583 - 28,684,487 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl828,496,075 - 28,659,907 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605213,423,707 - 13,611,941 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rbpms
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248397,068,761 - 7,242,159 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248397,068,656 - 7,243,627 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Rbpms
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11353,080,287 - 53,221,209 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rbpms
939 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:281
Count of miRNA genes:190
Interacting mature miRNAs:213
Transcripts:ENSRNOT00000017883, ENSRNOT00000046138, ENSRNOT00000068011
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)164445512389455123Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)163692878281928782Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)164199206486992064Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16423421266955197Rat
2302057Pia29Pristane induced arthritis QTL 293.60.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)162846870173468701Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164909919691442908Rat
631525Pia14Pristane induced arthritis QTL 144.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)166241446475736480Rat
1357403Slep4Serum leptin concentration QTL 43.91blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)163236104377361043Rat
8694453Bw172Body weight QTL 1728.330.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)163105803976058039Rat
7411648Foco22Food consumption QTL 22150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)165942871491442908Rat
1298529Arunc1Aerobic running capacity QTL 14exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)163439829479398294Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683908666195506Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683908666195506Rat
6903294Stl30Serum triglyceride level QTL 302.60.0013blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)163188527176885271Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)164445512389455123Rat
8694364Abfw7Abdominal fat weight QTL 712.220.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)165942871491442908Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683908666195506Rat
8694429Bw164Body weight QTL 16450.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)165942871491442908Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161773081872536785Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683908666195506Rat

Markers in Region
RH144171  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21658,376,634 - 58,376,810 (+)MAPPERmRatBN7.2
Rnor_6.01662,091,207 - 62,091,382NCBIRnor6.0
Rnor_5.01661,755,477 - 61,755,652UniSTSRnor5.0
RGSC_v3.41662,145,819 - 62,145,994UniSTSRGSC3.4
Celera1656,414,074 - 56,414,249UniSTS
RH 3.4 Map16541.7UniSTS
Cytogenetic Map16q12.3UniSTS
AI011370  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21658,388,631 - 58,388,876 (+)MAPPERmRatBN7.2
Rnor_6.01662,103,206 - 62,103,450NCBIRnor6.0
Rnor_5.01661,767,476 - 61,767,720UniSTSRnor5.0
RGSC_v3.41662,157,818 - 62,158,062UniSTSRGSC3.4
Celera1656,426,075 - 56,426,319UniSTS
RH 3.4 Map16542.0UniSTS
Cytogenetic Map16q12.3UniSTS
AI231834  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21658,395,106 - 58,395,304 (+)MAPPERmRatBN7.2
Rnor_6.01662,109,681 - 62,109,878NCBIRnor6.0
Rnor_5.01661,773,951 - 61,774,148UniSTSRnor5.0
RGSC_v3.41662,164,293 - 62,164,490UniSTSRGSC3.4
Celera1656,432,550 - 56,432,747UniSTS
RH 3.4 Map16560.2UniSTS
Cytogenetic Map16q12.3UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000017883   ⟹   ENSRNOP00000017883
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1664,942,609 - 65,078,085 (+)Ensembl
mRatBN7.2 Ensembl1658,239,474 - 58,375,007 (+)Ensembl
Rnor_6.0 Ensembl1661,954,590 - 62,089,579 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000068011   ⟹   ENSRNOP00000063629
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1664,942,530 - 65,085,005 (+)Ensembl
mRatBN7.2 Ensembl1658,239,474 - 58,394,005 (+)Ensembl
Rnor_6.0 Ensembl1661,954,809 - 62,096,497 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000113205   ⟹   ENSRNOP00000080717
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1664,942,530 - 65,078,373 (+)Ensembl
mRatBN7.2 Ensembl1658,239,474 - 58,394,001 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000116989   ⟹   ENSRNOP00000088378
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1664,987,767 - 65,078,085 (+)Ensembl
mRatBN7.2 Ensembl1658,239,874 - 58,394,001 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000119714   ⟹   ENSRNOP00000081138
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1664,942,530 - 65,098,503 (+)Ensembl
mRatBN7.2 Ensembl1658,239,474 - 58,395,426 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000130736   ⟹   ENSRNOP00000109592
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1664,943,057 - 65,098,503 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000144605   ⟹   ENSRNOP00000111391
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1664,942,624 - 65,098,503 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000173928   ⟹   ENSRNOP00000109005
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1664,942,530 - 65,098,270 (+)Ensembl
RefSeq Acc Id: NM_001271244   ⟹   NP_001258173
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81664,942,609 - 65,078,085 (+)NCBI
mRatBN7.21658,239,474 - 58,375,007 (+)NCBI
Rnor_6.01661,954,590 - 62,089,579 (+)NCBI
Rnor_5.01661,618,879 - 61,774,268 (+)NCBI
Celera1656,277,529 - 56,412,446 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006253238   ⟹   XP_006253300
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81664,942,159 - 65,098,504 (+)NCBI
mRatBN7.21658,239,370 - 58,395,424 (+)NCBI
Rnor_6.01661,954,570 - 62,109,998 (+)NCBI
Rnor_5.01661,618,879 - 61,774,268 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006253240   ⟹   XP_006253302
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81664,942,159 - 65,097,090 (+)NCBI
mRatBN7.21658,239,405 - 58,394,010 (+)NCBI
Rnor_6.01661,954,574 - 62,108,582 (+)NCBI
Rnor_5.01661,618,879 - 61,774,268 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006253241   ⟹   XP_006253303
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81664,942,159 - 65,098,504 (+)NCBI
mRatBN7.21658,239,375 - 58,394,010 (+)NCBI
Rnor_6.01661,954,571 - 62,108,579 (+)NCBI
Rnor_5.01661,618,879 - 61,774,268 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063275646   ⟹   XP_063131716
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81664,942,159 - 65,092,128 (+)NCBI
RefSeq Acc Id: XR_010058306
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81664,942,159 - 65,097,090 (+)NCBI
RefSeq Acc Id: XR_010058307
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81664,942,159 - 65,097,090 (+)NCBI
RefSeq Acc Id: XR_010058308
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81665,042,679 - 65,097,090 (+)NCBI
RefSeq Acc Id: NP_001258173   ⟸   NM_001271244
- UniProtKB: F2Z3S5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006253300   ⟸   XM_006253238
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006253303   ⟸   XM_006253241
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006253302   ⟸   XM_006253240
- Peptide Label: isoform X2
- UniProtKB: F1M9Y9 (UniProtKB/Swiss-Prot),   A0A8I5ZR01 (UniProtKB/Swiss-Prot),   A0A8I6G705 (UniProtKB/TrEMBL),   A0A8I6AAP9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000063629   ⟸   ENSRNOT00000068011
Ensembl Acc Id: ENSRNOP00000017883   ⟸   ENSRNOT00000017883
Ensembl Acc Id: ENSRNOP00000081138   ⟸   ENSRNOT00000119714
Ensembl Acc Id: ENSRNOP00000080717   ⟸   ENSRNOT00000113205
Ensembl Acc Id: ENSRNOP00000088378   ⟸   ENSRNOT00000116989
RefSeq Acc Id: XP_063131716   ⟸   XM_063275646
- Peptide Label: isoform X2
- UniProtKB: F1M9Y9 (UniProtKB/Swiss-Prot),   A0A8I6G705 (UniProtKB/Swiss-Prot),   A0A8I5ZR01 (UniProtKB/Swiss-Prot),   A0A8I6AAP9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000109592   ⟸   ENSRNOT00000130736
Ensembl Acc Id: ENSRNOP00000111391   ⟸   ENSRNOT00000144605
Ensembl Acc Id: ENSRNOP00000109005   ⟸   ENSRNOT00000173928
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M9Y9-F1-model_v2 AlphaFold F1M9Y9 1-220 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700140
Promoter ID:EPDNEW_R10664
Type:multiple initiation site
Name:Rbpms_1
Description:RNA binding protein with multiple splicing
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01661,954,627 - 61,954,687EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561067 AgrOrtholog
BioCyc Gene G2FUF-11127 BioCyc
Ensembl Genes ENSRNOG00000013328 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000017883 ENTREZGENE
  ENSRNOT00000017883.6 UniProtKB/Swiss-Prot
  ENSRNOT00000113205 ENTREZGENE
  ENSRNOT00000113205.1 UniProtKB/Swiss-Prot
  ENSRNOT00000119714 ENTREZGENE
  ENSRNOT00000119714.1 UniProtKB/Swiss-Prot
  ENSRNOT00000144605 ENTREZGENE
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot
  RBD_domain_sf UniProtKB/Swiss-Prot
  RRM_dom UniProtKB/Swiss-Prot
KEGG Report rno:498642 UniProtKB/Swiss-Prot
NCBI Gene 498642 ENTREZGENE
PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B UniProtKB/Swiss-Prot
Pfam RRM_1 UniProtKB/Swiss-Prot
PhenoGen Rbpms PhenoGen
PROSITE RRM UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000013328 RatGTEx
SMART RRM UniProtKB/Swiss-Prot
Superfamily-SCOP RNA-binding domain, RBD UniProtKB/Swiss-Prot
UniProt A0A8I5ZR01 ENTREZGENE
  A0A8I6AAP9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6G705 ENTREZGENE
  A0ABK0LZ82_RAT UniProtKB/TrEMBL
  A0ABK0M1P2_RAT UniProtKB/TrEMBL
  F1M9Y9 ENTREZGENE
  F2Z3S5 ENTREZGENE, UniProtKB/TrEMBL
  RBPMS_RAT UniProtKB/Swiss-Prot
UniProt Secondary A0A8I5ZR01 UniProtKB/Swiss-Prot
  F1M9Y9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-01-15 Rbpms  RNA binding protein, mRNA processing factor  Rbpms  RNA binding protein with multiple splicing  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1561067  similar to RNA binding protein gene with multiple splicing   RGD1561067_predicted  similar to RNA binding protein gene with multiple splicing (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1561067_predicted  similar to RNA binding protein gene with multiple splicing (predicted)  LOC498642  similar to RNA binding protein gene with multiple splicing  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC498642  similar to RNA binding protein gene with multiple splicing      Symbol and Name status set to provisional 70820 PROVISIONAL