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Gene: Rbpms (RNA binding protein, mRNA processing factor) Rattus norvegicus

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Symbol:

Rbpms

Name:

RNA binding protein, mRNA processing factor

RGD ID:

1561067

Description:

Enables identical protein binding activity; molecular adaptor activity; and pre-mRNA binding activity. Involved in protein-containing complex assembly and regulation of alternative mRNA splicing, via spliceosome. Predicted to be located in cytoplasmic stress granule; cytosol; and nucleoplasm. Orthologous to human RBPMS (RNA binding protein, mRNA processing factor); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; aconitine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC498642; RBP-MS; RGD1561067; RNA binding protein gene with multiple splicing; RNA binding protein with multiple splicing; RNA-binding protein with multiple splicing; similar to RNA binding protein gene with multiple splicing

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RBPMS (RNA binding protein, mRNA processing factor)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Treefam
Mus musculus (house mouse):	Rbpms (RNA binding protein gene with multiple splicing)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rbpms (RNA binding protein, mRNA processing factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RBPMS (RNA binding protein, mRNA processing factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RBPMS (RNA binding protein, mRNA processing factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rbpms (RNA binding protein, mRNA processing factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RBPMS (RNA binding protein, mRNA processing factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RBPMS (RNA binding protein, mRNA processing factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rbpms (RNA binding protein, mRNA processing factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	HFM1 (helicase for meiosis 1)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	RBPMS (RNA binding protein, mRNA processing factor)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Rbpms (RNA binding protein gene with multiple splicing)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	mec-8	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	cpo	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rbpms	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	WHI3	Alliance	DIOPT (OrthoFinder\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	WHI4	Alliance	DIOPT (OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	rbpms	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	64,942,159 - 65,098,504 (+)	NCBI		GRCr8
mRatBN7.2	16	58,239,370 - 58,395,424 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	58,239,474 - 58,395,426 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	63,579,457 - 63,713,962 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	66,993,105 - 67,127,638 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	62,213,707 - 62,348,200 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	61,954,569 - 62,109,998 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	61,954,590 - 62,096,497 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	61,618,879 - 61,774,268 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	62,009,626 - 62,163,466 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	16	56,277,529 - 56,412,446 (+)	NCBI		Celera
Cytogenetic Map	16	q12.2-q12.3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP,ISO)

17beta-estradiol (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3-dimethoxynaphthalene-1,4-dione (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

aconitine (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (EXP,ISO)

alpha-Zearalanol (EXP)

amiodarone (ISO)

antimony(0) (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

azoxystrobin (EXP)

Benoxacor (ISO)

benzo[a]pyrene (EXP,ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butanal (ISO)

Butylbenzyl phthalate (ISO)

C60 fullerene (EXP)

cadmium dichloride (ISO)

calyculin a (ISO)

carbon nanotube (ISO)

carnosic acid (ISO)

chlordecone (ISO)

chlorpyrifos (EXP,ISO)

cisplatin (EXP,ISO)

clofibrate (ISO)

cobalt dichloride (ISO)

copper atom (ISO)

copper(0) (ISO)

crocidolite asbestos (ISO)

Cuprizon (EXP)

cyclophosphamide (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP,ISO)

dichloroacetic acid (ISO)

dicrotophos (ISO)

diethyl phthalate (ISO)

diisobutyl phthalate (ISO)

diisononyl phthalate (ISO)

dioxygen (ISO)

dipotassium bis[mu-tartrato(4-)]diantimonate(2-) trihydrate (ISO)

diquat (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

entinostat (ISO)

epoxiconazole (ISO)

ethanol (ISO)

fenthion (ISO)

finasteride (EXP)

fonofos (ISO)

fulvestrant (ISO)

glyphosate (EXP)

hydrogen peroxide (ISO)

imidacloprid (EXP)

indometacin (ISO)

isotretinoin (ISO)

mercury atom (ISO)

mercury(0) (ISO)

methidathion (ISO)

methoxychlor (EXP)

methylmercury chloride (ISO)

mitomycin C (ISO)

N,N-diethyl-m-toluamide (EXP)

N-methylformamide (ISO)

N-nitrosodimethylamine (ISO)

nefazodone (EXP)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (EXP)

parathion (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (EXP)

permethrin (EXP)

phenobarbital (ISO)

pirinixic acid (ISO)

propiconazole (ISO)

rotenone (EXP,ISO)

SB 431542 (ISO)

selenium atom (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

Soman (EXP)

tamoxifen (ISO)

terbufos (ISO)

tetrachloromethane (EXP,ISO)

thiabendazole (EXP)

titanium dioxide (ISO)

topotecan (EXP)

tremolite asbestos (ISO)

tributylstannane (ISO)

trichloroethene (ISO)

trichostatin A (ISO)

triptonide (ISO)

valdecoxib (EXP)

valproic acid (ISO)

vancomycin (ISO)

vinclozolin (EXP)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of DNA-templated transcription (IEA)

protein-containing complex assembly (IMP)

regulation of alternative mRNA splicing, via spliceosome (IMP)

response to oxidative stress (ISO)

SMAD protein signal transduction (ISO)

Cellular Component

cytoplasm (ISO)

cytoplasmic stress granule (ISO)

cytosol (ISO)

nucleoplasm (IEA,ISO)

nucleus (ISO)

P-body (IEA)

Molecular Function

identical protein binding (IMP)

molecular adaptor activity (IMP)

mRNA 3'-UTR binding (ISO)

mRNA binding (IBA)

mRNA CDS binding (ISO)

pre-mRNA binding (IMP)

pre-mRNA intronic binding (ISO)

protein binding (IPI,ISO)

protein homodimerization activity (ISO)

RNA binding (IEA,ISO)

transcription coactivator activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Cell-type specific regulator RBPMS switches alternative splicing via higher-order oligomerization and heterotypic interactions with other splicing regulators.	Yang Y, etal., Nucleic Acids Res. 2023 Oct 13;51(18):9961-9982. doi: 10.1093/nar/gkad652.

Additional References at PubMed

PMID:17099224	PMID:19737887	PMID:22658674	PMID:26347403	PMID:31283468

Genomics

Comparative Map Data

Rbpms
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	64,942,159 - 65,098,504 (+)	NCBI		GRCr8
mRatBN7.2	16	58,239,370 - 58,395,424 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	58,239,474 - 58,395,426 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	63,579,457 - 63,713,962 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	66,993,105 - 67,127,638 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	62,213,707 - 62,348,200 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	61,954,569 - 62,109,998 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	61,954,590 - 62,096,497 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	61,618,879 - 61,774,268 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	62,009,626 - 62,163,466 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	16	56,277,529 - 56,412,446 (+)	NCBI		Celera
Cytogenetic Map	16	q12.2-q12.3	NCBI

RBPMS
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	30,384,541 - 30,572,256 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	30,384,511 - 30,572,256 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	8	30,242,057 - 30,429,773 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	30,361,486 - 30,549,276 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	8	30,361,485 - 30,549,276	NCBI
Celera	8	29,200,833 - 29,388,215 (+)	NCBI		Celera
Cytogenetic Map	8	p12	NCBI
HuRef	8	28,786,611 - 28,974,229 (+)	NCBI		HuRef
CHM1_1	8	30,444,486 - 30,631,917 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	8	30,663,428 - 30,851,701 (+)	NCBI		T2T-CHM13v2.0

Rbpms
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	34,272,671 - 34,419,925 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	34,272,671 - 34,419,891 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	33,782,643 - 33,929,922 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	33,782,643 - 33,929,863 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	34,893,116 - 35,040,313 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	35,249,999 - 35,395,753 (-)	NCBI		MGSCv36	mm8
Celera	8	36,420,353 - 36,511,505 (-)	NCBI		Celera
Cytogenetic Map	8	A4	NCBI
cM Map	8	20.85	NCBI

Rbpms
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955463	6,901,263 - 6,988,870 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955463	6,817,570 - 6,973,393 (+)	NCBI	ChiLan1.0	ChiLan1.0

RBPMS
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	48,944,932 - 49,134,955 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	24,660,519 - 24,850,850 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	29,685,311 - 29,875,614 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	26,876,710 - 27,065,387 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	26,965,830 - 27,065,387 (+)	Ensembl	panpan1.1		panPan2

RBPMS
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	16	33,788,675 - 33,961,595 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	16	33,788,781 - 33,960,286 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	16	34,250,794 - 34,424,085 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	16	35,817,904 - 35,991,250 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	16	33,916,132 - 34,089,651 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	16	34,486,116 - 34,659,162 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	16	34,606,907 - 34,780,115 (-)	NCBI		UU_Cfam_GSD_1.0

Rbpms
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404943	56,959,279 - 57,127,286 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936792	236,503 - 404,510 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936792	236,509 - 404,510 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RBPMS
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	54,539,238 - 54,725,583 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	54,538,583 - 54,725,605 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	61,933,646 - 62,143,596 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RBPMS
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	28,496,583 - 28,684,487 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	28,496,075 - 28,659,907 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666052	13,423,707 - 13,611,941 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rbpms
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624839	7,068,761 - 7,242,159 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624839	7,068,656 - 7,243,627 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Rbpms
765 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	281
Count of miRNA genes:	190
Interacting mature miRNAs:	213
Transcripts:	ENSRNOT00000017883, ENSRNOT00000046138, ENSRNOT00000068011
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2300163	Bmd64	Bone mineral density QTL 64	5.3	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	16	37752156	82752156	Rat
1600378	Arunc4	Aerobic running capacity QTL 4		0.03	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	16	380245	80345693	Rat
70215	Niddm29	Non-insulin dependent diabetes mellitus QTL 29	3.54		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	16	19004435	75226532	Rat
1578768	Stresp22	Stress response QTL 22	2.8		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	16	35288870	80288870	Rat
737826	Alc11	Alcohol consumption QTL 11	3.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	4227609	60252231	Rat
2302057	Pia29	Pristane induced arthritis QTL 29	3.6	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)	16	21735975	66735975	Rat
7205510	Activ5	Activity QTL 5	3.78	0.00028	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	16	42396345	84729064	Rat
631525	Pia14	Pristane induced arthritis QTL 14	4.4		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	16	55711087	83402471	Rat
8694453	Bw172	Body weight QTL 172	8.33	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	16	24325513	69325513	Rat
7411648	Foco22	Food consumption QTL 22	15	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	16	52726464	84729064	Rat
1298529	Arunc1	Aerobic running capacity QTL 1	4		exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	16	31951520	60148445	Rat
2312663	Slep9	Serum leptin concentration QTL 9		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	832236	59492508	Rat
2312660	Bw95	Body weight QTL 95		0.05	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	16	832236	59492508	Rat
6903294	Stl30	Serum triglyceride level QTL 30	2.6	0.0013	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	16	25152793	70152793	Rat
2293690	Bss45	Bone structure and strength QTL 45	5.13	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	16	37752156	82752156	Rat
8694364	Abfw7	Abdominal fat weight QTL 7	12.22	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	16	52726464	84729064	Rat
2312666	Insul16	Insulin level QTL 16		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	16	832236	59492508	Rat
8694429	Bw164	Body weight QTL 164	5	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	16	52726464	84729064	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor diameter (CMO:0001889)	16	17696791	82635055	Rat
2312669	Stl23	Serum triglyceride level QTL 23		0.01	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	16	832236	59492508	Rat

Markers in Region

RH144171

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	58,376,634 - 58,376,810 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	62,091,207 - 62,091,382	NCBI	Rnor6.0
Rnor_5.0	16	61,755,477 - 61,755,652	UniSTS	Rnor5.0
RGSC_v3.4	16	62,145,819 - 62,145,994	UniSTS	RGSC3.4
Celera	16	56,414,074 - 56,414,249	UniSTS
RH 3.4 Map	16	541.7	UniSTS
Cytogenetic Map	16	q12.3	UniSTS

AI011370

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	58,388,631 - 58,388,876 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	62,103,206 - 62,103,450	NCBI	Rnor6.0
Rnor_5.0	16	61,767,476 - 61,767,720	UniSTS	Rnor5.0
RGSC_v3.4	16	62,157,818 - 62,158,062	UniSTS	RGSC3.4
Celera	16	56,426,075 - 56,426,319	UniSTS
RH 3.4 Map	16	542.0	UniSTS
Cytogenetic Map	16	q12.3	UniSTS

AI231834

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	58,395,106 - 58,395,304 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	62,109,681 - 62,109,878	NCBI	Rnor6.0
Rnor_5.0	16	61,773,951 - 61,774,148	UniSTS	Rnor5.0
RGSC_v3.4	16	62,164,293 - 62,164,490	UniSTS	RGSC3.4
Celera	16	56,432,550 - 56,432,747	UniSTS
RH 3.4 Map	16	560.2	UniSTS
Cytogenetic Map	16	q12.3	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001271244	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253238	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253240	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253241	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771303	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275646	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010058306	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010058307	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010058308	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_596485	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_596486	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473970	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000017883 ⟹ ENSRNOP00000017883

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	58,239,474 - 58,375,007 (+)	Ensembl
Rnor_6.0 Ensembl	16	61,954,590 - 62,089,579 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000068011 ⟹ ENSRNOP00000063629

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	58,239,474 - 58,394,005 (+)	Ensembl
Rnor_6.0 Ensembl	16	61,954,809 - 62,096,497 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113205 ⟹ ENSRNOP00000080717

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	58,239,474 - 58,394,001 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000116989 ⟹ ENSRNOP00000088378

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	58,239,874 - 58,394,001 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119714 ⟹ ENSRNOP00000081138

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	58,239,474 - 58,395,426 (+)	Ensembl

RefSeq Acc Id:

NM_001271244 ⟹ NP_001258173

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	64,942,609 - 65,078,085 (+)	NCBI
mRatBN7.2	16	58,239,474 - 58,375,007 (+)	NCBI
Rnor_6.0	16	61,954,590 - 62,089,579 (+)	NCBI
Rnor_5.0	16	61,618,879 - 61,774,268 (+)	NCBI
Celera	16	56,277,529 - 56,412,446 (+)	NCBI

Sequence:

show sequence

GGCGAGAGAAAGCGCGCTGCGTGCGGCCCCGCTGCCCAGAGCCTGCCAGCTGCGCGCCCTCGGC
CGCTCGGGTCCTAACCGCGCCCGCCGCCTCGCCTCCTCCGCCTCGGCCGCGTCCCGACTCCCGG
GCTCGCCCGGCCTCTCGGAGGTCCCCGCCCGACTCCGCTCTCCGCTGTGCCGCCCGGCTCCAGC
CCCGCAGCCCGCCCCGGGGGGAAGGTAGCAGCGGGCGAGCGCGCCCTCGCCTCCAGCCCCGCGC
CCCAGCCCCGCGCGGCGACGAAGGACCGGGAAGATGAACGGCGGCGGCAAAGCCGAGAAGGAGA
ACACCCCGAGCGAGGCCAACCTTCAGGAGGAGGAGGTCCGGACCCTGTTTGTCAGTGGCCTGCC
TCTGGACATCAAGCCCCGAGAGCTGTACCTGCTCTTCAGGCCATTCAAGGGCTATGAAGGTTCT
CTCATAAAGCTCACATCTAAACAGCCCGTAGGCTTTGTCAGTTTCGACAGTCGCTCAGAAGCAG
AGGCCGCAAAGAATGCTTTGAACGGCATCCGCTTCGATCCTGAAATCCCGCAAACACTACGACT
AGAGTTTGCTAAGGCAAACACGAAGATGGCCAAGAACAAACTCGTAGGGACTCCAAACCCCAGT
ACTCCTCTGCCCAACACTGTACCTCAGTTCATTGCCAGGGAGCCATATGAGCTCACAGTACCTG
CACTTTACCCCAGTAGCCCTGAAGTGTGGGCCCCGTACCCTCTGTACCCAGCGGAGTTAGCGCC
TGCTCTTCCTCCTCCTGCCGCTTTCACCTATCCCGCTTCACTGCATGCCCAGTGTTTCTCTCCA
GAGGCAAAGCCCAACACACCTGTCTTTTGTCCACTTCTTCAGCAAATTAGATTTGTCTCTGGGA
ATGTGTTTGTCACGTATCAACCCACTGCAGACCAACAGAGGGAGCTCCCATGTTGAATTTATTA
GCAAGCCTCCCCTGCCCCCTTTTGCAAAAACTATTTCTTGATGATATTTGAGAGATTTCAATAA
AAATTTTAATCAGAGCAAAAAAAAAATGGTCTCAAG

hide sequence

RefSeq Acc Id:

XM_006253238 ⟹ XP_006253300

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	64,942,159 - 65,098,504 (+)	NCBI
mRatBN7.2	16	58,239,370 - 58,395,424 (+)	NCBI
Rnor_6.0	16	61,954,570 - 62,109,998 (+)	NCBI
Rnor_5.0	16	61,618,879 - 61,774,268 (+)	NCBI

Sequence:

show sequence

GGGAGGGGAGGAGGGAGAAAGGCGAGAGAAAGCGCGCTGCGTGCGGCCCCGCTGCCCAGAGCCT
GCCAGCTGCGCGCCCTCGGCCGCTCGGGTCCTAACCGCGCCCGCCGCCTCGCCTCCTCCGCCTC
GGCCGCGTCCCGACTCCCGGGCTCGCCCGGCCTCTCGGAGGTCCCCGCCCGACTCCGCTCTCCG
CTGTGCCGCCCGGCTCCAGCCCCGCAGCCCGCCCCGGGGGGAAGGTAGCAGCGGGCGAGCGCGC
CCTCGCCTCCAGCCCCGCGCCCCAGCCCCGCGCGGCGACGAAGGACCGGGAAGATGAACGGCGG
CGGCAAAGCCGAGAAGGAGAACACCCCGAGCGAGGCCAACCTTCAGGAGGAGGAGGTCCGGACC
CTGTTTGTCAGTGGCCTGCCTCTGGACATCAAGCCCCGAGAGCTGTACCTGCTCTTCAGGCCAT
TCAAGGGCTATGAAGGTTCTCTCATAAAGCTCACATCTAAACAGCCCGTAGGCTTTGTCAGTTT
CGACAGTCGCTCAGAAGCAGAGGCCGCAAAGAATGCTTTGAACGGCATCCGCTTCGATCCTGAA
ATCCCGCAAACACTACGACTAGAGTTTGCTAAGGCAAACACGAAGATGGCCAAGAACAAACTCG
TAGGGACTCCAAACCCCAGTACTCCTCTGCCCAACACTGTACCTCAGTTCATTGCCAGGGAGCC
ATATGCGCTGGCTCCCTCCCTCCGAGGCTACTTCCCAGGGCTGGAAGTCCCGGCAGTTCTGCTG
AGGCTGTGCTTGAAAACACCTTGCCCAGTTTTGATCCCTTCAAGACTTCATAACAGCCTCTATC
ACACATCTGTTTTCCTCAAAGAAAAAAAAATATATAATAAAATGTGTTTTACTCTTTTACACTG
TATAATTTTAAGAAATGTGTTATTTGTGAATGCATGGTCTGACATTTCTGTACAGTTTGGAGAC
ATGAGCAGTAAAGCCAGGATGGTTAGTATTTTTATAACAGACATTTTAAGAGTGGACAGATGGA
TTCTTTACACTAGGCTACATCACGACTTTTGTTTGATTTTTGAATGCTTTTAATGGTGTTTATC
TTATTTTTCTTCTGAAATAAGATGCATGTTTGAAACATATCTCTAAATAGCATCCAAGTTTCCA
CAATTGTGTTGTGAATGTGTGGACTCCCTCTGCCTGGCCCAGAGTCAGCCCCATTAGTAGCTGG
GTGTAGAAATGCGCTTCTGCAGTATTAGCTCTGTAATCCTGGCTCCCAGGGATCTCCCTGCAAG
ACAATCAGTGCCCCAAAGCATCTGCCATTGTAGTGTATAAACCACTGGGCAAAGACTACTTAGG
TAATGTCTCTGAAAACCATGGCCACTCTGGCTGTGACTATACAAACTGTGCCCGGGGACATATT
GACATTCTATGCTTGTGTCGTTTAGGATAGCACCCTCAGAGTGTGCAACTTAATATATATCACC
CAACTTCCAGAAACTGTTCCGCAGTGGAACGAACTGCAAGGTCCACCTTCCATTTATGTGGTTG
GCCTTTAGTTTGGAGGCAAACATGCCTCAGGCTTTGCCCACTCAGCCTGCGCTGGGCATCACAT
CTCTCAAGTGGGTCAGCAAAGCGTTGGCCTGCCTGAGTAGCTAGCTGTTCTGGTCTGGCAGCCA
TGTCAGTCAGACCATCCATCACATTCTCTGGAACGCTACATGCTCATCTTGAGACTACCTACTA
CATTGCAGTGTGGGGCATGAAACTTGGCCATGTGCGATGAACACTGTTACCCTTGCTTCAAGAC
CTCTTCAAAGCCCAAAGTTAGTCTTGTGTTGTGTGCCAACACATTCCCAGAGGCTGTGATGGCA
GTCTTCCCGCTCCTCAAACGAGCCATGCATACTACGTTGACCTCAGAATTTCCAGCTGCTGATA
CTACTAGACATAATCACAATCTTTGTATCTTTGTTATTGATCTGCTTGTATTGTGTTGAAAACG
TCATATTTTAATGAATATTTCGGTGGTTTGGGAGGGTTATTTCATTATTTTTCAAGAGAAGTAA
AAAATGTCAAGTTTTTAAAGGTTATTAAAAAGAGAAACACCAAGGCCTGTAATAAGGGCCTTTT
CTCTGTAAACTAGAGGCCGGGGCAGGCAGCACTGGGGAATTAGCATCCAGGTGGTGTTCCGTGC
CACTTGACTGTAAGACTCCTCTACTTGCTTTAAAGAGAGTGAGCCACTTATCATCGATTATGCT
TTTATAATTGTGTAAAGGTACTTTTGTATTGTCATTTTTTTAAAAGATAATAAAAGTTTATTCC
AGCCATTA

hide sequence

RefSeq Acc Id:

XM_006253240 ⟹ XP_006253302

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	64,942,159 - 65,097,090 (+)	NCBI
mRatBN7.2	16	58,239,405 - 58,394,010 (+)	NCBI
Rnor_6.0	16	61,954,574 - 62,108,582 (+)	NCBI
Rnor_5.0	16	61,618,879 - 61,774,268 (+)	NCBI

Sequence:

show sequence

GGGGAGGAGGGAGAAAGGCGAGAGAAAGCGCGCTGCGTGCGGCCCCGCTGCCCAGAGCCTGCCA
GCTGCGCGCCCTCGGCCGCTCGGGTCCTAACCGCGCCCGCCGCCTCGCCTCCTCCGCCTCGGCC
GCGTCCCGACTCCCGGGCTCGCCCGGCCTCTCGGAGGTCCCCGCCCGACTCCGCTCTCCGCTGT
GCCGCCCGGCTCCAGCCCCGCAGCCCGCCCCGGGGGGAAGGTAGCAGCGGGCGAGCGCGCCCTC
GCCTCCAGCCCCGCGCCCCAGCCCCGCGCGGCGACGAAGGACCGGGAAGATGAACGGCGGCGGC
AAAGCCGAGAAGGAGAACACCCCGAGCGAGGCCAACCTTCAGGAGGAGGAGGTCCGGACCCTGT
TTGTCAGTGGCCTGCCTCTGGACATCAAGCCCCGAGAGCTGTACCTGCTCTTCAGGCCATTCAA
GGGCTATGAAGGTTCTCTCATAAAGCTCACATCTAAACAGCCCGTAGGCTTTGTCAGTTTCGAC
AGTCGCTCAGAAGCAGAGGCCGCAAAGAATGCTTTGAACGGCATCCGCTTCGATCCTGAAATCC
CGCAAACACTACGACTAGAGTTTGCTAAGGCAAACACGAAGATGGCCAAGAACAAACTCGTAGG
GACTCCAAACCCCAGTACTCCTCTGCCCAACACTGTACCTCAGTTCATTGCCAGGGAGCCATAT
GAGCTCACAGTACCTGCACTTTACCCCAGTAGCCCTGAAGTGTGGGCCCCGTACCCTCTGTACC
CAGCGGAGTTAGCGCCTGCTCTTCCTCCTCCTGCCGCTTTCACCTATCCCGCTTCACTGCATGC
CCAGATGCGCTGGCTCCCTCCCTCCGAGGCTACTTCCCAGGGCTGGAAGTCCCGGCAGTTCTGC
TGAGGCTGTGCTTGAAAACACCTTGCCCAGTTTTGATCCCTTCAAGACTTCATAACAGCCTCTA
TCACACATCTGTTTTCCTCAAAGAAAAAAAAATATATAATAAAATGTGTTTTACTCTTTTACAC
TG

hide sequence

RefSeq Acc Id:

XM_006253241 ⟹ XP_006253303

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	64,942,159 - 65,098,504 (+)	NCBI
mRatBN7.2	16	58,239,375 - 58,394,010 (+)	NCBI
Rnor_6.0	16	61,954,571 - 62,108,579 (+)	NCBI
Rnor_5.0	16	61,618,879 - 61,774,268 (+)	NCBI

Sequence:

show sequence

GGAGGGGAGGAGGGAGAAAGGCGAGAGAAAGCGCGCTGCGTGCGGCCCCGCTGCCCAGAGCCTG
CCAGCTGCGCGCCCTCGGCCGCTCGGGTCCTAACCGCGCCCGCCGCCTCGCCTCCTCCGCCTCG
GCCGCGTCCCGACTCCCGGGCTCGCCCGGCCTCTCGGAGGTCCCCGCCCGACTCCGCTCTCCGC
TGTGCCGCCCGGCTCCAGCCCCGCAGCCCGCCCCGGGGGGAAGGTAGCAGCGGGCGAGCGCGCC
CTCGCCTCCAGCCCCGCGCCCCAGCCCCGCGCGGCGACGAAGGACCGGGAAGATGAACGGCGGC
GGCAAAGCCGAGAAGGAGAACACCCCGAGCGAGGCCAACCTTCAGGAGGAGGAGGTCCGGACCC
TGTTTGTCAGTGGCCTGCCTCTGGACATCAAGCCCCGAGAGCTGTACCTGCTCTTCAGGCCATT
CAAGGGCTATGAAGGTTCTCTCATAAAGCTCACATCTAAACAGCCCGTAGGCTTTGTCAGTTTC
GACAGTCGCTCAGAAGCAGAGGCCGCAAAGAATGCTTTGAACGGCATCCGCTTCGATCCTGAAA
TCCCGCAAACACTACGACTAGAGTTTGCTAAGGCAAACACGAAGATGGCCAAGAACAAACTCGT
AGGGACTCCAAACCCCAGTACTCCTCTGCCCAACACTGTACCTCAGTTCATTGCCAGGGAGCCA
TATGCGCTGGCTCCCTCCCTCCGAGGCTACTTCCCAGGGCTGGAAGTCCCGGCAGTTCTGCTGA
GGCTGTGTCTCGGGTGTGTGATGGCGGCTGCAATCTGTCTTGTGGGTATTAATGCGGTCTTCAC
TGGTGGCGACTGTCATCCAGCTGTTCTGCAAAACTGGAGCTTGCTGGCTTGAAAACACCTTGCC
CAGTTTTGATCCCTTCAAGACTTCATAACAGCCTCTATCACACATCTGTTTTCCTCAAAGAAAA
AAAAATATATAATAAAATGTGTTTTACTCTTTTACA

hide sequence

RefSeq Acc Id:

XM_063275646 ⟹ XP_063131716

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	64,942,159 - 65,092,128 (+)	NCBI

RefSeq Acc Id:

XR_010058306

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	64,942,159 - 65,097,090 (+)	NCBI

RefSeq Acc Id:

XR_010058307

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	64,942,159 - 65,097,090 (+)	NCBI

RefSeq Acc Id:

XR_010058308

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	65,042,679 - 65,097,090 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001258173	(Get FASTA)	NCBI Sequence Viewer
	XP_006253300	(Get FASTA)	NCBI Sequence Viewer
	XP_006253302	(Get FASTA)	NCBI Sequence Viewer
	XP_006253303	(Get FASTA)	NCBI Sequence Viewer
	XP_063131716	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	A0A8I6G705	(Get FASTA)	NCBI Sequence Viewer
	EDM09150	(Get FASTA)	NCBI Sequence Viewer
	EDM09151	(Get FASTA)	NCBI Sequence Viewer
	EDM09152	(Get FASTA)	NCBI Sequence Viewer
	EDM09153	(Get FASTA)	NCBI Sequence Viewer
	EDM09154	(Get FASTA)	NCBI Sequence Viewer
	EDM09155	(Get FASTA)	NCBI Sequence Viewer
	EDM09156	(Get FASTA)	NCBI Sequence Viewer
	EDM09157	(Get FASTA)	NCBI Sequence Viewer
	EDM09158	(Get FASTA)	NCBI Sequence Viewer
	EDM09159	(Get FASTA)	NCBI Sequence Viewer
	EDM09160	(Get FASTA)	NCBI Sequence Viewer
	EDM09161	(Get FASTA)	NCBI Sequence Viewer
	EDM09162	(Get FASTA)	NCBI Sequence Viewer
	EDM09163	(Get FASTA)	NCBI Sequence Viewer
	EDM09164	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000017883.4
	ENSRNOP00000063629.3
	ENSRNOP00000080717.1
	ENSRNOP00000081138.1
	ENSRNOP00000088378.1
	ENSRNOP00055016903
	ENSRNOP00055016910
	ENSRNOP00055016917
	ENSRNOP00060015971
	ENSRNOP00060015983
	ENSRNOP00060015991
	ENSRNOP00065002772
	ENSRNOP00065002778
	ENSRNOP00065002783

RefSeq Acc Id:

NP_001258173 ⟸ NM_001271244

- UniProtKB:

F2Z3S5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MNGGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVG
FVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNTVPQFI
AREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAAFTYPASLHAQCFSPEAKPNTPVFCP
LLQQIRFVSGNVFVTYQPTADQQRELPC

hide sequence

RefSeq Acc Id:

XP_006253300 ⟸ XM_006253238

- Peptide Label:

isoform X1

- Sequence:

show sequence

MNGGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVG
FVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNTVPQFI
AREPYALAPSLRGYFPGLEVPAVLLRLCLKTPCPVLIPSRLHNSLYHTSVFLKEKKIYNKMCFT
LLHCIILRNVLFVNAWSDISVQFGDMSSKARMVSIFITDILRVDRWILYTRLHHDFCLIFECF

hide sequence

RefSeq Acc Id:	XP_006253303 ⟸ XM_006253241
- Peptide Label:	isoform X3
- Sequence:	show sequence MNGGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVG FVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNTVPQFI AREPYALAPSLRGYFPGLEVPAVLLRLCLGCVMAAAICLVGINAVFTGGDCHPAVLQNWSLLA hide sequence

RefSeq Acc Id:	XP_006253302 ⟸ XM_006253240
- Peptide Label:	isoform X2
- UniProtKB:	F1M9Y9 (UniProtKB/Swiss-Prot), A0A8I5ZR01 (UniProtKB/Swiss-Prot), A0A8I6G705 (UniProtKB/TrEMBL), A0A8I6AAP9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNGGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVG FVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNTVPQFI AREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAAFTYPASLHAQMRWLPPSEATSQGWK SRQFC hide sequence

Ensembl Acc Id:

ENSRNOP00000063629 ⟸ ENSRNOT00000068011

Ensembl Acc Id:

ENSRNOP00000017883 ⟸ ENSRNOT00000017883

Ensembl Acc Id:

ENSRNOP00000081138 ⟸ ENSRNOT00000119714

Ensembl Acc Id:

ENSRNOP00000080717 ⟸ ENSRNOT00000113205

Ensembl Acc Id:

ENSRNOP00000088378 ⟸ ENSRNOT00000116989

RefSeq Acc Id:	XP_063131716 ⟸ XM_063275646
- Peptide Label:	isoform X2
- UniProtKB:	F1M9Y9 (UniProtKB/Swiss-Prot), A0A8I6G705 (UniProtKB/Swiss-Prot), A0A8I5ZR01 (UniProtKB/Swiss-Prot)

Protein Domains

RRM

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1M9Y9-F1-model_v2	AlphaFold	F1M9Y9	1-220	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700140

Promoter ID:

EPDNEW_R10664

Type:

multiple initiation site

Name:

Rbpms_1

Description:

RNA binding protein with multiple splicing

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	16	61,954,627 - 61,954,687	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1561067	AgrOrtholog
BioCyc Gene	G2FUF-11127	BioCyc
Ensembl Genes	ENSRNOG00000013328	Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00055012300	UniProtKB/Swiss-Prot
	ENSRNOG00060011971	UniProtKB/Swiss-Prot
	ENSRNOG00065002832	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000017883.6	UniProtKB/Swiss-Prot
	ENSRNOT00000068011.5	UniProtKB/TrEMBL
	ENSRNOT00000113205.1	UniProtKB/Swiss-Prot
	ENSRNOT00000116989.1	UniProtKB/TrEMBL
	ENSRNOT00000119714.1	UniProtKB/Swiss-Prot
	ENSRNOT00055020930	UniProtKB/Swiss-Prot
	ENSRNOT00055020937	UniProtKB/Swiss-Prot
	ENSRNOT00055020944	UniProtKB/Swiss-Prot
	ENSRNOT00060020306	UniProtKB/Swiss-Prot
	ENSRNOT00060020322	UniProtKB/Swiss-Prot
	ENSRNOT00060020330	UniProtKB/Swiss-Prot
	ENSRNOT00065003914	UniProtKB/Swiss-Prot
	ENSRNOT00065003920	UniProtKB/Swiss-Prot
	ENSRNOT00065003924	UniProtKB/Swiss-Prot
Gene3D-CATH	3.30.70.330	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	Nucleotide-bd_a/b_plait_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RBD_domain_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RRM_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:498642	UniProtKB/Swiss-Prot
NCBI Gene	498642	ENTREZGENE
PANTHER	RNA-BINDING PROTEIN WITH MULTIPLE SPLICING	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	RRM_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Rbpms	PhenoGen
PROSITE	RRM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000013328	RatGTEx
	ENSRNOG00055012300	RatGTEx
	ENSRNOG00060011971	RatGTEx
	ENSRNOG00065002832	RatGTEx
SMART	RRM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	RNA-binding domain, RBD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I5ZR01	ENTREZGENE
	A0A8I6AAP9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6G705	ENTREZGENE
	F1M9Y9	ENTREZGENE
	F2Z3S5	ENTREZGENE, UniProtKB/TrEMBL
	RBPMS_RAT	UniProtKB/Swiss-Prot
UniProt Secondary	A0A8I5ZR01	UniProtKB/Swiss-Prot
	F1M9Y9	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2018-01-15	Rbpms	RNA binding protein, mRNA processing factor	Rbpms	RNA binding protein with multiple splicing	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1561067	similar to RNA binding protein gene with multiple splicing	RGD1561067_predicted	similar to RNA binding protein gene with multiple splicing (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1561067_predicted	similar to RNA binding protein gene with multiple splicing (predicted)	LOC498642	similar to RNA binding protein gene with multiple splicing	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC498642	similar to RNA binding protein gene with multiple splicing			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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