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Gene: Cby2 (chibby family member 2) Rattus norvegicus

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Symbol:

Cby2

Name:

chibby family member 2

RGD ID:

1561044

Description:

Predicted to enable identical protein binding activity. Predicted to be located in cytoplasmic vesicle. Orthologous to human CBY2 (chibby family member 2); INTERACTS WITH 2,2',5,5'-tetrachlorobiphenyl; 6-propyl-2-thiouracil; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC498572; similar to testis-specific leucine zipper protein nurit; spermatid associated; spermatid-associated protein; Spert

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CBY2 (chibby family member 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB
Mus musculus (house mouse):	Cby2 (chibby family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cby2 (chibby family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CBY2 (chibby family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CBY2 (chibby family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cby2 (chibby family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CBY2 (chibby family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CBY2 (chibby family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cby2 (chibby family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CBY2 (chibby family member 2)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cby2 (chibby family member 2)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	57,318,820 - 57,413,687 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	15	57,317,988 - 57,334,505 (-)	Ensembl				GRCr8
mRatBN7.2	15	50,909,435 - 51,004,449 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	50,909,436 - 50,934,633 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	15	55,059,019 - 55,067,414 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	56,177,345 - 56,185,740 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	53,004,443 - 53,012,896 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	57,642,576 - 57,738,383 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	57,642,577 - 57,651,041 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	15	61,353,104 - 61,361,569 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Celera	15	50,539,217 - 50,547,288 (-)	NCBI		Celera
Cytogenetic Map	15	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,2',5,5'-tetrachlorobiphenyl (EXP)

6-propyl-2-thiouracil (EXP)

arsane (ISO)

arsenic atom (ISO)

bisphenol A (EXP)

C60 fullerene (EXP)

CGP 52608 (ISO)

doxorubicin (EXP)

folic acid (ISO)

iron dichloride (ISO)

Monobutylphthalate (EXP)

silicon dioxide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cytoplasmic vesicle (IEA,ISO)

Molecular Function

identical protein binding (ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
3.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:12204287	PMID:27107012

Genomics

Comparative Map Data

Cby2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	57,318,820 - 57,413,687 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	15	57,317,988 - 57,334,505 (-)	Ensembl				GRCr8
mRatBN7.2	15	50,909,435 - 51,004,449 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	50,909,436 - 50,934,633 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	15	55,059,019 - 55,067,414 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	56,177,345 - 56,185,740 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	53,004,443 - 53,012,896 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	57,642,576 - 57,738,383 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	57,642,577 - 57,651,041 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	15	61,353,104 - 61,361,569 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Celera	15	50,539,217 - 50,547,288 (-)	NCBI		Celera
Cytogenetic Map	15	q11	NCBI

CBY2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	13	45,702,320 - 45,714,559 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	13	45,702,320 - 45,714,559 (+)	Ensembl			hg38	GRCh38
GRCh37	13	46,276,455 - 46,288,694 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	13	45,174,447 - 45,186,694 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	13	27,331,110 - 27,343,357 (+)	NCBI		Celera
Cytogenetic Map	13	q14.13	NCBI
HuRef	13	27,073,127 - 27,085,374 (+)	NCBI		HuRef
CHM1_1	13	46,245,374 - 46,257,621 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	13	44,923,623 - 44,935,862 (+)	NCBI		T2T-CHM13v2.0

Cby2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	75,820,274 - 75,830,616 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	75,820,317 - 75,830,556 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	14	75,582,834 - 75,593,177 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	75,582,877 - 75,593,116 (-)	Ensembl			mm10	GRCm38
MGSCv37	14	75,982,641 - 75,992,923 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	14	74,317,032 - 74,326,119 (-)	NCBI		MGSCv36	mm8
Celera	14	73,084,953 - 73,095,127 (-)	NCBI		Celera
Cytogenetic Map	14	D3	NCBI
cM Map	14	40.23	NCBI

Cby2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955518	3,395,552 - 3,414,076 (+)	Ensembl
ChiLan1.0	NW_004955518	3,395,464 - 3,410,616 (+)	NCBI	ChiLan1.0	ChiLan1.0

CBY2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	14	45,676,673 - 45,689,244 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	13	36,730,717 - 36,743,288 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	13	27,317,454 - 27,329,698 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

CBY2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	22	5,440,473 - 5,543,710 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	22	5,405,741 - 5,614,277 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	22	5,429,537 - 5,532,815 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	22	5,558,384 - 5,661,519 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	22	5,558,394 - 5,569,845 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	22	5,340,206 - 5,443,499 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	22	5,403,466 - 5,506,437 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	22	5,408,683 - 5,512,047 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Cby2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	155,849,176 - 155,863,046 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936857	271,561 - 285,148 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936857	271,561 - 285,148 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CBY2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	11	21,612,493 - 21,622,446 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	11	21,612,319 - 21,719,817 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	11	22,057,078 - 22,067,206 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CBY2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	23,763,786 - 23,776,290 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	3	23,764,157 - 23,776,100 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666057	20,269,201 - 20,281,384 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cby2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624748	9,336,027 - 9,356,066 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624748	9,336,140 - 9,356,021 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Variants

Variants in Cby2
700 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	54
Count of miRNA genes:	50
Interacting mature miRNAs:	51
Transcripts:	ENSRNOT00000072138
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300144	Rf23	Renal function QTL 23	3.61		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	15	44806773	104695021	Rat
152025253	Hrtrt24	Heart rate QTL 24	3.82		heart pumping trait (VT:2000009)		15	31855803	92671517	Rat
724545	Niddm54	Non-insulin dependent diabetes mellitus QTL 54		0.02	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	15	57203895	80107161	Rat
10054130	Srcrt8	Stress Responsive Cort QTL 8	2.18	0.0085	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	15	28527732	73527732	Rat
1582227	Gluco30	Glucose level QTL 30	3.6	0.0003	blood glucose amount (VT:0000188)	absolute change in blood glucose level area under curve (CMO:0002034)	15	43677244	88677244	Rat
1582228	Epfw3	Epididymal fat weight QTL 3	4.1	0.0002	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	15	43677244	88677244	Rat
1578646	Bmd18	Bone mineral density QTL 18	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	15	25285835	104695021	Rat
1578647	Bmd17	Bone mineral density QTL 17	4		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	15	25285835	104695021	Rat
61424	Scl1	Serum cholesterol level QTL 1	7.7	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	15	19155762	87086765	Rat
1598828	Glom14	Glomerulus QTL 14	2.5		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	15	40463152	85463152	Rat
2317750	Glom26	Glomerulus QTL 26	4.3		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	15	14926594	71614418	Rat
631550	Bw7	Body weight QTL 7	3.6		body mass (VT:0001259)	body weight (CMO:0000012)	15	22336351	67336351	Rat
1582242	Gluco28	Glucose level QTL 28	3.3	0.0008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	15	43677244	88677244	Rat
1578660	Bss19	Bone structure and strength QTL 19	4.3		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	15	25285835	104695021	Rat
1582244	Bw79	Body weight QTL 79	4	0.0002	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	15	43677244	88677244	Rat
1582214	Stl21	Serum triglyceride level QTL 21	3.1	0.022	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	15	43677244	88677244	Rat

Markers in Region

AI596460

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	50,909,542 - 50,909,648 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	57,642,684 - 57,642,789	NCBI	Rnor6.0
Rnor_5.0	15	61,353,212 - 61,353,317	UniSTS	Rnor5.0
Celera	15	50,539,325 - 50,539,430	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
10	10	32	114	47	46	17	32	17	6	176	94	9	89	47	79	29	7	7

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001017506	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252328	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252329	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008770893	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008770894	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008770895	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC079300	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473951	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000072138 ⟹ ENSRNOP00000066296

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	57,318,821 - 57,334,505 (-)	Ensembl
mRatBN7.2 Ensembl	15	50,909,436 - 50,917,900 (-)	Ensembl
Rnor_6.0 Ensembl	15	57,642,577 - 57,651,041 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000098900 ⟹ ENSRNOP00000083970

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	57,317,988 - 57,327,285 (-)	Ensembl
mRatBN7.2 Ensembl	15	50,909,445 - 50,916,739 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119540 ⟹ ENSRNOP00000078599

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	15	50,909,436 - 50,934,633 (-)	Ensembl

RefSeq Acc Id:

NM_001017506 ⟹ NP_001017506

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	57,318,820 - 57,327,285 (-)	NCBI
mRatBN7.2	15	50,909,435 - 50,917,900 (-)	NCBI
Rnor_6.0	15	57,642,576 - 57,651,041 (-)	NCBI
Rnor_5.0	15	61,353,104 - 61,361,569 (-)	NCBI
Celera	15	50,539,217 - 50,547,288 (-)	RGD

Sequence:

show sequence

CCAAGCTGCTTAGAGAAAAACCATGAGCTCTGAAAACCACCATATTGTTCTGTGATGTCACCTC
TGGAATGTTCTGAGTGTTTTGGTGACCAGCTTATGCACAGGACCTATACCTGGCACCTCACGTT
GCACTCGAGGCCAAATTTTACGAGAAAGAGAGAGATCAGATCTGAGAGCCTAGAAATTCCAATC
AATGTGATTCTACCTCAGAGGGGCACGGAGCCCTTCCTGAGGCTCCACAACCTATACACCACTC
CTCGCTGCTCCAGGCAGGCTGCCATGCCCCGGATAAGCCGCAGGGTAGCCAGCCAGCACTCCTA
CCCACTCAACCGCTTCTCCTCTATGCCCTTTGACCCCATGGAGCGCCCCACCTCCCAGGCCGAC
CTGGAACTAGACTACAACCCTCCCCGAGTGCAGCTTAGCGACGAGATGTTTGTCTTCCAAGATG
GGCGTTGGGTGAACGAGAGCTGCCGCCTGCAGTCACCTTACTTCTCTCCCTCCTCCTCCTTCCA
CCATAAACTGCACCACAAGAGGATGGCCAAGGAGTACCTGCTGCAGGAAGAGAACAAGTCTCTT
CGGGATGAGAACAGGGCTCTGAGGGATGAGAACAAGGCCCTCCGCAAGGAGAACAAGATTCTAC
AGGTCTTTTGGGAAGAGCACAAGGTCACTTTGGGCCACGAGGAGAGTCAGACCTCCTCGCCACT
GCTGCACAAAGACACAACCTCCCAGGAAGTAGTGAAGAAAGACAACGCCACTTTGCCTGCCCAG
CGTAGCAAGGAGAACACCCTACAGTTCATTCGAGAGGAGAACCGGGCCCTCCAGCAGTTGCTGG
AGCAGAGGCAGGCCTACTGGGCACAGGCAGAAGAGAGTGCGACTTCTGCTGAGGAGGGCAAGCC
CACCTCCTCACCCAAGGAGGAACCCCATAATTCAGGGCTTCTGCCAGATCAGAGCACAAGCCAC
TCCTCCCACTTTGAGGAGCCCAAAGCGTCCCCTACAACACAGGAGGACTCGAAGACGCTGCGCG
CCCTGAGGGAGATGGTTACCAACTTGTCCGGGCCATCTGGGGAAGAAGAGGGCAAGGCAGGCCC
TAATCTAACTGACAGCGCTCAGCCCCTGCAGCTGCTGAGAGAGATGAATCAGGCACTGCAGGCC
CTGAGGGAGGAGAACCGGCTGCTGCAGGAGGAGAACAGGGCTCTCCACGCCATGCGTGAGGAGC
ATCGCGTCTTCCAGGAGGAGAACAAGGCCCTGTGGGAGAACAACAAGCTGAAGCTGCAGCAGCG
GCTGGTCATCGACACGGTGACTGAGGTCACAGCTCGTATGGAGATGCTTATTGAGGAGTTGTAT
GCCTTCATGCCGGCCAAGAACAACAAAGATCCCAAAAAGCCCAGCAGGGTCTGAGGCCTCGGCA
GTGGACATAGACGCCAAGACCAGGCCGGAGAGAATCCTCAACCTTCCTTTGTCTTCCTTGTGTT
GGCCCAGCAGTGCGTGCCTGTGGGACAGCGGAGAAAGGGCCATCATCCACCCGAGACACAATAA
AGGCAGAGGAGGCTGGGGCCAGCCAACACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006252328 ⟹ XP_006252390

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	57,318,820 - 57,326,296 (-)	NCBI
mRatBN7.2	15	50,909,435 - 50,916,925 (-)	NCBI
Rnor_6.0	15	57,642,731 - 57,650,276 (-)	NCBI
Rnor_5.0	15	61,353,104 - 61,361,569 (-)	NCBI

Sequence:

show sequence

ATACTGTAAGAAAAATCTAACTTGACCAAAGGAGACCCTTCATTATGTTTAACTACTCTGGAAA
TCTGTGGAGAACTCTAGCTTGAACTAGAATTGACATCTTATGCACGAGAATGAACCCAGGAGCT
GACACAGAATGAACCCAGGAGCTGACACCCCAGCATGTGGCCCATTTGCAGCTGCCAAAAGAAT
TAATCCCTGTTGTGGGCCAAAGATGGGTACTAAGGAATGGATGTTCAGTTGCTCCTTTTGAGGC
CAGTGAATGGTTAAACCCCTCGCAGATTGTGGTTCTTAGGTCTCCAGGCATGCAATAGCTTCCT
TGGTGGGATGCCTTTGATTTGACTGTTTCTTCTGCTGCTATGTCACAAAGGGGTGGGCTTGCTT
TCTCCAGAGTTACCTAAGAGCTCATTGGAAGACCAGGACCATGCAACCAGAGGGGGTGAAATGT
AGGATGGAGGGACCCAAGACACAGAGGGGCACGGAGCCCTTCCTGAGGCTCCACAACCTATACA
CCACTCCTCGCTGCTCCAGGCAGGCTGCCATGCCCCGGATAAGCCGCAGGGTAGCCAGCCAGCA
CTCCTACCCACTCAACCGCTTCTCCTCTATGCCCTTTGACCCCATGGAGCGCCCCACCTCCCAG
GCCGACCTGGAACTAGACTACAACCCTCCCCGAGTGCAGCTTAGCGACGAGATGTTTGTCTTCC
AAGATGGGCGTTGGGTGAACGAGAGCTGCCGCCTGCAGTCACCTTACTTCTCTCCCTCCTCCTC
CTTCCACCATAAACTGCACCACAAGAGGATGGCCAAGGAGTACCTGCTGCAGGAAGAGAACAAG
TCTCTTCGGGATGAGAACAGGGCTCTGAGGGATGAGAACAAGGCCCTCCGCAAGGAGAACAAGA
TTCTACAGGTCTTTTGGGAAGAGCACAAGGTCACTTTGGGCCACGAGGAGAGTCAGACCTCCTC
GCCACTGCTGCACAAAGACACAACCTCCCAGGAAGTAGTGAAGAAAGACAACGCCACTTTGCCT
GCCCAGCGTAGCAAGGAGAACACCCTACAGTTCATTCGAGAGGAGAACCGGGCCCTCCAGCAGT
TGCTGGAGCAGAGGCAGGCCTACTGGGCACAGGCAGAAGAGAGTGCGACTTCTGCTGAGGAGGG
CAAGCCCACCTCCTCACCCAAGGAGGAACCCCATAATTCAGGGCTTCTGCCAGATCAGAGCACA
AGCCACTCCTCCCACTTTGAGGAGCCCAAAGCGTCCCCTACAACACAGGAGGACTCGAAGACGC
TGCGCGCCCTGAGGGAGATGGTTACCAACTTGTCCGGGCCATCTGGGGAAGAAGAGGGCAAGGC
AGGCCCTAATCTAACTGACAGCGCTCAGCCCCTGCAGCTGCTGAGAGAGATGAATCAGGCACTG
CAGGCCCTGAGGGAGGAGAACCGGCTGCTGCAGGAGGAGAACAGGGCTCTCCACGCCATGCGTG
AGGAGCATCGCGTCTTCCAGGAGGAGAACAAGGCCCTGTGGGAGAACAACAAGCTGAAGCTGCA
GCAGCGGCTGGTCATCGACACGGTGACTGAGGTCACAGCTCGTATGGAGATGCTTATTGAGGAG
TTGTATGCCTTCATGCCGGCCAAGAACAACAAAGATCCCAAAAAGCCCAGCAGGGTCTGAGGCC
TCGGCAGTGG

hide sequence

RefSeq Acc Id:

XM_006252329 ⟹ XP_006252391

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	57,318,820 - 57,327,158 (-)	NCBI
mRatBN7.2	15	50,909,435 - 50,917,774 (-)	NCBI
Rnor_6.0	15	57,642,731 - 57,650,906 (-)	NCBI
Rnor_5.0	15	61,353,104 - 61,361,569 (-)	NCBI

Sequence:

show sequence

CTACTTTCTTGATACGGAAATAATAGTTTAAGGCCGGGAAGAACTGCTTCAGGAACTTTCAACA
GGGTTTTTATGTTTGCTAATTCCTGCATTGACTTCTGTCCGGTGATCAGTAAGGTTTCTTACTG
GCCAGCACTCGAGGCCAAATTTTACGAGAAAGAGAGAGATCAGATCTGAGAGCCTAGAAATTCC
AATCAATGTGATTCTACCTCAGAGGGGCACGGAGCCCTTCCTGAGGCTCCACAACCTATACACC
ACTCCTCGCTGCTCCAGGCAGGCTGCCATGCCCCGGATAAGCCGCAGGGTAGCCAGCCAGCACT
CCTACCCACTCAACCGCTTCTCCTCTATGCCCTTTGACCCCATGGAGCGCCCCACCTCCCAGGC
CGACCTGGAACTAGACTACAACCCTCCCCGAGTGCAGCTTAGCGACGAGATGTTTGTCTTCCAA
GATGGGCGTTGGGTGAACGAGAGCTGCCGCCTGCAGTCACCTTACTTCTCTCCCTCCTCCTCCT
TCCACCATAAACTGCACCACAAGAGGATGGCCAAGGAGTACCTGCTGCAGGAAGAGAACAAGTC
TCTTCGGGATGAGAACAGGGCTCTGAGGGATGAGAACAAGGCCCTCCGCAAGGAGAACAAGATT
CTACAGGTCTTTTGGGAAGAGCACAAGGTCACTTTGGGCCACGAGGAGAGTCAGACCTCCTCGC
CACTGCTGCACAAAGACACAACCTCCCAGGAAGTAGTGAAGAAAGACAACGCCACTTTGCCTGC
CCAGCGTAGCAAGGAGAACACCCTACAGTTCATTCGAGAGGAGAACCGGGCCCTCCAGCAGTTG
CTGGAGCAGAGGCAGGCCTACTGGGCACAGGCAGAAGAGAGTGCGACTTCTGCTGAGGAGGGCA
AGCCCACCTCCTCACCCAAGGAGGAACCCCATAATTCAGGGCTTCTGCCAGATCAGAGCACAAG
CCACTCCTCCCACTTTGAGGAGCCCAAAGCGTCCCCTACAACACAGGAGGACTCGAAGACGCTG
CGCGCCCTGAGGGAGATGGTTACCAACTTGTCCGGGCCATCTGGGGAAGAAGAGGGCAAGGCAG
GCCCTAATCTAACTGACAGCGCTCAGCCCCTGCAGCTGCTGAGAGAGATGAATCAGGCACTGCA
GGCCCTGAGGGAGGAGAACCGGCTGCTGCAGGAGGAGAACAGGGCTCTCCACGCCATGCGTGAG
GAGCATCGCGTCTTCCAGGAGGAGAACAAGGCCCTGTGGGAGAACAACAAGCTGAAGCTGCAGC
AGCGGCTGGTCATCGACACGGTGACTGAGGTCACAGCTCGTATGGAGATGCTTATTGAGGAGTT
GTATGCCTTCATGCCGGCCAAGAACAACAAAGATCCCAAAAAGCCCAGCAGGGTCTGAGGCCTC
GGCAGTGG

hide sequence

RefSeq Acc Id:

XM_008770893 ⟹ XP_008769115

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	57,318,820 - 57,413,687 (-)	NCBI
mRatBN7.2	15	50,909,435 - 51,004,449 (-)	NCBI
Rnor_6.0	15	57,642,731 - 57,669,233 (-)	NCBI

Sequence:

show sequence

GAGGTGTTTGCTAGCATTCATTCTCTGTGAGGACCGTATTTTCCCCACTGGTGTTTTGGCCTTT
CTTTGGTTGAGCAGGTTGACTGATGATTTCATGGTGTAAACTGACATGCTGCCATGGGGACGAA
ACCGAGCAAGGCACAAATTGCTACATGCAGTCCCAGTCTCCCTTATAGGGCAGTCCCCACCTCC
CCTGCCTCTTAGGCAAAGCTGACTTTCTTTAGCCTTGTCATTTTCTGTCTAGGAAGTCTTTATT
TATTCTCAGGACAGGGTTATTTGGGCGACTGACCTCGTATTTAACATCAGTCAGAGACGTATCG
ACAATTAGCGAGTTTCAACAAATCACGTAGATAAATACCAGCTCTTGTAGCCCCATCAGAGCAT
TCGAGCAATGCAGCATTCTTCCAGGTATTAAATTAGCACCAGCTTTTAGAAATCGAAGGAAGAC
ATATACAGGAAATTACCAAGCCATAACTCTAATTTCCCTACCTGGTAAATTGCTAAAACAATCA
ATAGCACAGACAGTCTGGAAGCCACCTTGGGAAACTCTAGTGATGTATGTGCTGTGGTCCTATG
ATGGAGGGGATGGGCAAATGGAGGCCCTTCTCAAGGGGGACACTGGAGGCTGCCATGGTAACCA
CAGCAATGTACCCACCCGCTGCCTCTGGCCAGCAGATTTGAAACGTATTGGTCTGGTTGGAACC
AGCGAAGGGCAGTATTCACAGAGGGGTTATATGAGGTTTCTCTCTGGTGGGTCGCATGATCACG
TGTGTTCAGGCACATGGATTTTTCAGTGCTAACAGTGGCCATTGACAGAGTCTCTGCTGGGCAG
ACAAGCATTACCCTTGATCCAAGAGTGAATCAGGTTCACTAATTACCTTACTCTTTGCCCCTCT
CTGGTGACTCATCTTTTCATTGTCCCAGGTCTATAGTACGCTGCTAGTATTTTTAAACATTAAA
GGCTCACATTTTCACACTGAACTTGCTTTGTGCTACCCAGTCCCTAACAGCTGGCCTGGCACCC
GGCAGTGTCCGTTCTCCCAGCATAGTGGTGGGCAGATGGTCAGACCCCGTGGCCTATGCATTCA
TGTAGATCAAACAGTTTGGAGAGGTCTTTCTCCGCCCTTTAAAAATTCTCAGGCTCTCATGTAG
GCTGCCCTTTATGGGCAGGTGGGTTGCACACGGTCAGGCTCATACTCTGTGTCGATGCCTGTGG
TTAAGGGTAACAGCTGAACGACAGTTGGAGACTCCTTTGGGCACACCATCCAGAAGGCTCTGTG
GAGTAATGTTGCCATCACTGCAACTCCAGCCAGAAAACCTGCTTTCAAACTTCTGAACTTCTAA
GTCTATTTGACCTTGGACAAATCACATCTCTTTGAGCCTGATTTCCTAGTCTGCTAAGTAGAGA
TGATCTTCCTCTCACTGTGTGGGGCTGGAGATGGAGTTCAGTCGGTAGAGTTCTTACCTAGCAG
GCTCAGGGCCCTGGATTTGGTCTTCAGCATTGAAAAGATTTTGTCATGGGAAAATGTTGGCATG
TTATAGGAGTTCTATAGACACCAAGTGCTTTTTGGTTTAAACTTGATCTTTTGAACACTTATTC
CCTATCTCCTATAATGCTGTTTTAGGGGACTATGGGACCTGAAAGGAGTGGGGCCAGCTGGTGG
AAGTAGGGCGTGAGCCTCTGAAGAGTCTCCTCAGCCCTTGCTTTCTGCCTCACTTCCTGCTTCC
TGGTCTGCTACGATGTGAGCCACCACCATCCCACACTCCTGCTACCATCAATTGAGCTGCTCCA
TTGAGCCTTGATGATGGACTGAAAGCCCCTCAAGTTATGAGCCCACATGAATTTCCCCTCCCTT
AGTTGTTTCTGTCAGGTGAGGCTAAGGCAAAAGTAACACATATACGTCATCTGGTTTCTGGGGT
GACCTATTGCAGGCTGAGGCTAGGGAGGCAGCTGCACCAAGTCTTGCGAAGTGTATGATGTTCA
AAGACTCACAGGAGCGAGGGGTGTGTCCTGTCTCAAGTGGACTGCAGACACCGCAGAGAGGAGC
ATCGTCTTCGGTTCCTCATTTCTCTCTGTACAGGTGGCACTGTGGTGGCATCTGCCATCTCTAC
GGGCACGTCTCATGGCCTCAGCCTAGTTCACAGGGGCTGGAGAATGTAGTCCCTGGCCAGTTAC
TACCCAGCAGTGTCCTCAGGCTATGGAGGGACAAGAATGTTCATTCGTGCTGATGGCCTTTGCT
GGCCAGTCTTATGTCACCTTGACACAAGCCAGAGTTATCTGAAAGTCGGAAACGCCGATTAAGA
AGAGGCCTCCATAACATCCAGCTGAAAGGTGGCATTTCATCACGAGAGGGACACAGATATCGGC
TACAGTGGGCTATATCGATAGAAAGGAGTTTTTGCCCTGATAGGATTTGTAAGCTGCAAGGGTT
GCTGATGGATGCCAAGAAAGCTTGGAAGAAACCAGTGATGGAAATAAACCAGGAAGTGGTTGCT
GTACAGCTGTTTGGAATGCAGATGGAGCTTCCGCTTTGATGCTAGAACATGCAAGGCACTGCTG
TTTGCACTCGAGGCCAAATTTTACGAGAAAGAGAGAGATCAGATCTGAGAGCCTAGAAATTCCA
ATCAATGTGATTCTACCTCAGAGGGGCACGGAGCCCTTCCTGAGGCTCCACAACCTATACACCA
CTCCTCGCTGCTCCAGGCAGGCTGCCATGCCCCGGATAAGCCGCAGGGTAGCCAGCCAGCACTC
CTACCCACTCAACCGCTTCTCCTCTATGCCCTTTGACCCCATGGAGCGCCCCACCTCCCAGGCC
GACCTGGAACTAGACTACAACCCTCCCCGAGTGCAGCTTAGCGACGAGATGTTTGTCTTCCAAG
ATGGGCGTTGGGTGAACGAGAGCTGCCGCCTGCAGTCACCTTACTTCTCTCCCTCCTCCTCCTT
CCACCATAAACTGCACCACAAGAGGATGGCCAAGGAGTACCTGCTGCAGGAAGAGAACAAGTCT
CTTCGGGATGAGAACAGGGCTCTGAGGGATGAGAACAAGGCCCTCCGCAAGGAGAACAAGATTC
TACAGGTCTTTTGGGAAGAGCACAAGGTCACTTTGGGCCACGAGGAGAGTCAGACCTCCTCGCC
ACTGCTGCACAAAGACACAACCTCCCAGGAAGTAGTGAAGAAAGACAACGCCACTTTGCCTGCC
CAGCGTAGCAAGGAGAACACCCTACAGTTCATTCGAGAGGAGAACCGGGCCCTCCAGCAGTTGC
TGGAGCAGAGGCAGGCCTACTGGGCACAGGCAGAAGAGAGTGCGACTTCTGCTGAGGAGGGCAA
GCCCACCTCCTCACCCAAGGAGGAACCCCATAATTCAGGGCTTCTGCCAGATCAGAGCACAAGC
CACTCCTCCCACTTTGAGGAGCCCAAAGCGTCCCCTACAACACAGGAGGACTCGAAGACGCTGC
GCGCCCTGAGGGAGATGGTTACCAACTTGTCCGGGCCATCTGGGGAAGAAGAGGGCAAGGCAGG
CCCTAATCTAACTGACAGCGCTCAGCCCCTGCAGCTGCTGAGAGAGATGAATCAGGCACTGCAG
GCCCTGAGGGAGGAGAACCGGCTGCTGCAGGAGGAGAACAGGGCTCTCCACGCCATGCGTGAGG
AGCATCGCGTCTTCCAGGAGGAGAACAAGGCCCTGTGGGAGAACAACAAGCTGAAGCTGCAGCA
GCGGCTGGTCATCGACACGGTGACTGAGGTCACAGCTCGTATGGAGATGCTTATTGAGGAGTTG
TATGCCTTCATGCCGGCCAAGAACAACAAAGATCCCAAAAAGCCCAGCAGGGTCTGAGGCCTCG
GCAGTGG

hide sequence

RefSeq Acc Id:

XM_008770895 ⟹ XP_008769117

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	57,318,820 - 57,413,687 (-)	NCBI
mRatBN7.2	15	50,909,435 - 51,004,449 (-)	NCBI
Rnor_6.0	15	57,642,731 - 57,738,383 (-)	NCBI

Sequence:

show sequence

CTTCTCGGGCGGTTGCAGAGATATTAGCTGCAAGGGTTGCTGATGGATGCCAAGAAAGCTTGGA
AGAAACCAGTGATGGAAATAAACCAGGAAGTGGTTGCTGTACAGCTGTTTGGAATGCAGATGGA
GCTTCCGCTTTGATGCTAGAACATGCAAGGCACTGCTGTTTGCACTCGAGGCCAAATTTTACGA
GAAAGAGAGAGATCAGATCTGAGAGCCTAGAAATTCCAATCAATGTGATTCTACCTCAGAGGGG
CACGGAGCCCTTCCTGAGGCTCCACAACCTATACACCACTCCTCGCTGCTCCAGGCAGGCTGCC
ATGCCCCGGATAAGCCGCAGGGTAGCCAGCCAGCACTCCTACCCACTCAACCGCTTCTCCTCTA
TGCCCTTTGACCCCATGGAGCGCCCCACCTCCCAGGCCGACCTGGAACTAGACTACAACCCTCC
CCGAGTGCAGCTTAGCGACGAGATGTTTGTCTTCCAAGATGGGCGTTGGGTGAACGAGAGCTGC
CGCCTGCAGTCACCTTACTTCTCTCCCTCCTCCTCCTTCCACCATAAACTGCACCACAAGAGGA
TGGCCAAGGAGTACCTGCTGCAGGAAGAGAACAAGTCTCTTCGGGATGAGAACAGGGCTCTGAG
GGATGAGAACAAGGCCCTCCGCAAGGAGAACAAGATTCTACAGGTCTTTTGGGAAGAGCACAAG
GTCACTTTGGGCCACGAGGAGAGTCAGACCTCCTCGCCACTGCTGCACAAAGACACAACCTCCC
AGGAAGTAGTGAAGAAAGACAACGCCACTTTGCCTGCCCAGCGTAGCAAGGAGAACACCCTACA
GTTCATTCGAGAGGAGAACCGGGCCCTCCAGCAGTTGCTGGAGCAGAGGCAGGCCTACTGGGCA
CAGGCAGAAGAGAGTGCGACTTCTGCTGAGGAGGGCAAGCCCACCTCCTCACCCAAGGAGGAAC
CCCATAATTCAGGGCTTCTGCCAGATCAGAGCACAAGCCACTCCTCCCACTTTGAGGAGCCCAA
AGCGTCCCCTACAACACAGGAGGACTCGAAGACGCTGCGCGCCCTGAGGGAGATGGTTACCAAC
TTGTCCGGGCCATCTGGGGAAGAAGAGGGCAAGGCAGGCCCTAATCTAACTGACAGCGCTCAGC
CCCTGCAGCTGCTGAGAGAGATGAATCAGGCACTGCAGGCCCTGAGGGAGGAGAACCGGCTGCT
GCAGGAGGAGAACAGGGCTCTCCACGCCATGCGTGAGGAGCATCGCGTCTTCCAGGAGGAGAAC
AAGGCCCTGTGGGAGAACAACAAGCTGAAGCTGCAGCAGCGGCTGGTCATCGACACGGTGACTG
AGGTCACAGCTCGTATGGAGATGCTTATTGAGGAGTTGTATGCCTTCATGCCGGCCAAGAACAA
CAAAGATCCCAAAAAGCCCAGCAGGGTCTGAGGCCTCGGCAGTGG

hide sequence

Protein Sequences


Protein RefSeqs	NP_001017506	(Get FASTA)	NCBI Sequence Viewer
	XP_006252390	(Get FASTA)	NCBI Sequence Viewer
	XP_006252391	(Get FASTA)	NCBI Sequence Viewer
	XP_008769115	(Get FASTA)	NCBI Sequence Viewer
	XP_008769117	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH79300	(Get FASTA)	NCBI Sequence Viewer
	EDM02294	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000066296
	ENSRNOP00000066296.1
	ENSRNOP00000083970
GenBank Protein	Q6AXV6	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001017506 ⟸ NM_001017506

- UniProtKB:

Q6AXV6 (UniProtKB/Swiss-Prot), A6HTT1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSPLECSECFGDQLMHRTYTWHLTLHSRPNFTRKREIRSESLEIPINVILPQRGTEPFLRLHNL
YTTPRCSRQAAMPRISRRVASQHSYPLNRFSSMPFDPMERPTSQADLELDYNPPRVQLSDEMFV
FQDGRWVNESCRLQSPYFSPSSSFHHKLHHKRMAKEYLLQEENKSLRDENRALRDENKALRKEN
KILQVFWEEHKVTLGHEESQTSSPLLHKDTTSQEVVKKDNATLPAQRSKENTLQFIREENRALQ
QLLEQRQAYWAQAEESATSAEEGKPTSSPKEEPHNSGLLPDQSTSHSSHFEEPKASPTTQEDSK
TLRALREMVTNLSGPSGEEEGKAGPNLTDSAQPLQLLREMNQALQALREENRLLQEENRALHAM
REEHRVFQEENKALWENNKLKLQQRLVIDTVTEVTARMEMLIEELYAFMPAKNNKDPKKPSRV

hide sequence

RefSeq Acc Id:	XP_006252391 ⟸ XM_006252329
- Peptide Label:	isoform X3
- UniProtKB:	A6HTT1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPRISRRVASQHSYPLNRFSSMPFDPMERPTSQADLELDYNPPRVQLSDEMFVFQDGRWVNESC RLQSPYFSPSSSFHHKLHHKRMAKEYLLQEENKSLRDENRALRDENKALRKENKILQVFWEEHK VTLGHEESQTSSPLLHKDTTSQEVVKKDNATLPAQRSKENTLQFIREENRALQQLLEQRQAYWA QAEESATSAEEGKPTSSPKEEPHNSGLLPDQSTSHSSHFEEPKASPTTQEDSKTLRALREMVTN LSGPSGEEEGKAGPNLTDSAQPLQLLREMNQALQALREENRLLQEENRALHAMREEHRVFQEEN KALWENNKLKLQQRLVIDTVTEVTARMEMLIEELYAFMPAKNNKDPKKPSRV hide sequence

RefSeq Acc Id:	XP_006252390 ⟸ XM_006252328
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZY42 (UniProtKB/TrEMBL), A6HTT0 (UniProtKB/TrEMBL), A6HTT1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQPEGVKCRMEGPKTQRGTEPFLRLHNLYTTPRCSRQAAMPRISRRVASQHSYPLNRFSSMPFD PMERPTSQADLELDYNPPRVQLSDEMFVFQDGRWVNESCRLQSPYFSPSSSFHHKLHHKRMAKE YLLQEENKSLRDENRALRDENKALRKENKILQVFWEEHKVTLGHEESQTSSPLLHKDTTSQEVV KKDNATLPAQRSKENTLQFIREENRALQQLLEQRQAYWAQAEESATSAEEGKPTSSPKEEPHNS GLLPDQSTSHSSHFEEPKASPTTQEDSKTLRALREMVTNLSGPSGEEEGKAGPNLTDSAQPLQL LREMNQALQALREENRLLQEENRALHAMREEHRVFQEENKALWENNKLKLQQRLVIDTVTEVTA RMEMLIEELYAFMPAKNNKDPKKPSRV hide sequence

RefSeq Acc Id:	XP_008769117 ⟸ XM_008770895
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6G3C8 (UniProtKB/TrEMBL), A6HTT1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLEHARHCCLHSRPNFTRKREIRSESLEIPINVILPQRGTEPFLRLHNLYTTPRCSRQAAMPRI SRRVASQHSYPLNRFSSMPFDPMERPTSQADLELDYNPPRVQLSDEMFVFQDGRWVNESCRLQS PYFSPSSSFHHKLHHKRMAKEYLLQEENKSLRDENRALRDENKALRKENKILQVFWEEHKVTLG HEESQTSSPLLHKDTTSQEVVKKDNATLPAQRSKENTLQFIREENRALQQLLEQRQAYWAQAEE SATSAEEGKPTSSPKEEPHNSGLLPDQSTSHSSHFEEPKASPTTQEDSKTLRALREMVTNLSGP SGEEEGKAGPNLTDSAQPLQLLREMNQALQALREENRLLQEENRALHAMREEHRVFQEENKALW ENNKLKLQQRLVIDTVTEVTARMEMLIEELYAFMPAKNNKDPKKPSRV hide sequence

RefSeq Acc Id:	XP_008769115 ⟸ XM_008770893
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6G3C8 (UniProtKB/TrEMBL), A6HTT1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLEHARHCCLHSRPNFTRKREIRSESLEIPINVILPQRGTEPFLRLHNLYTTPRCSRQAAMPRI SRRVASQHSYPLNRFSSMPFDPMERPTSQADLELDYNPPRVQLSDEMFVFQDGRWVNESCRLQS PYFSPSSSFHHKLHHKRMAKEYLLQEENKSLRDENRALRDENKALRKENKILQVFWEEHKVTLG HEESQTSSPLLHKDTTSQEVVKKDNATLPAQRSKENTLQFIREENRALQQLLEQRQAYWAQAEE SATSAEEGKPTSSPKEEPHNSGLLPDQSTSHSSHFEEPKASPTTQEDSKTLRALREMVTNLSGP SGEEEGKAGPNLTDSAQPLQLLREMNQALQALREENRLLQEENRALHAMREEHRVFQEENKALW ENNKLKLQQRLVIDTVTEVTARMEMLIEELYAFMPAKNNKDPKKPSRV hide sequence

Ensembl Acc Id:

ENSRNOP00000066296 ⟸ ENSRNOT00000072138

Ensembl Acc Id:

ENSRNOP00000078599 ⟸ ENSRNOT00000119540

Ensembl Acc Id:

ENSRNOP00000083970 ⟸ ENSRNOT00000098900

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6AXV6-F1-model_v2	AlphaFold	Q6AXV6	1-447	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699832

Promoter ID:

EPDNEW_R10355

Type:

multiple initiation site

Name:

Spert_1

Description:

spermatid associated

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	15	57,651,058 - 57,651,118	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1561044	AgrOrtholog
BioCyc Gene	G2FUF-13122	BioCyc
Ensembl Genes	ENSRNOG00000047413	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000072138	ENTREZGENE
	ENSRNOT00000072138.2	UniProtKB/Swiss-Prot
	ENSRNOT00000098900	ENTREZGENE
IMAGE_CLONE	IMAGE:7134526	IMAGE-MGC_LOAD
InterPro	Chibby_fam	UniProtKB/Swiss-Prot
KEGG Report	rno:498572	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94437	IMAGE-MGC_LOAD
NCBI Gene	498572	ENTREZGENE
PANTHER	LEUCINE-RICH PROTEIN	UniProtKB/Swiss-Prot
	PTHR21533:SF13	UniProtKB/Swiss-Prot
Pfam	Chibby	UniProtKB/Swiss-Prot
PhenoGen	Cby2	PhenoGen
RatGTEx	ENSRNOG00000047413	RatGTEx
UniProt	A0A8I5ZY42	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6G3C8	ENTREZGENE, UniProtKB/TrEMBL
	A6HTT0	ENTREZGENE, UniProtKB/TrEMBL
	A6HTT1	ENTREZGENE, UniProtKB/TrEMBL
	Q6AXV6	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-09-13	Cby2	chibby family member 2	Spert	spermatid associated	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-05	Spert	spermatid associated	LOC498572	similar to testis-specific leucine zipper protein nurit	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	LOC498572	similar to testis-specific leucine zipper protein nurit			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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