Ccdc66 (coiled-coil domain containing 66) - Rat Genome Database

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Gene: Ccdc66 (coiled-coil domain containing 66) Rattus norvegicus
Analyze
Symbol: Ccdc66
Name: coiled-coil domain containing 66
RGD ID: 1560873
Description: Predicted to enable microtubule binding activity and protein homodimerization activity. Predicted to be involved in several processes, including detection of light stimulus involved in visual perception; regulation of protein localization to cilium; and retina homeostasis. Predicted to act upstream of or within post-embryonic retina morphogenesis in camera-type eye and retinal rod cell development. Predicted to be located in several cellular components, including Flemming body; cytosol; and microtubule organizing center. Predicted to be active in cilium; microtubule; and photoreceptor inner segment. Orthologous to human CCDC66 (coiled-coil domain containing 66); INTERACTS WITH amphetamine; bisphenol A; paracetamol.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: coiled-coil domain-containing protein 66; LOC306238; RGD1560873; similar to RIKEN cDNA E230015L20 gene
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2162,662,125 - 2,694,031 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl162,662,131 - 2,694,023 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0163,107,119 - 3,139,188 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl163,110,239 - 3,139,177 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0163,074,622 - 3,107,108 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4162,747,032 - 2,776,544 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera162,626,955 - 2,658,821 (-)NCBICelera
Cytogenetic Map16p16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19777273   PMID:21680557   PMID:28235840  


Genomics

Comparative Map Data
Ccdc66
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2162,662,125 - 2,694,031 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl162,662,131 - 2,694,023 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0163,107,119 - 3,139,188 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl163,110,239 - 3,139,177 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0163,074,622 - 3,107,108 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4162,747,032 - 2,776,544 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera162,626,955 - 2,658,821 (-)NCBICelera
Cytogenetic Map16p16NCBI
CCDC66
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38356,557,156 - 56,621,837 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl356,557,161 - 56,621,837 (+)EnsemblGRCh38hg38GRCh38
GRCh37356,591,184 - 56,655,865 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36356,566,231 - 56,630,876 (+)NCBINCBI36Build 36hg18NCBI36
Celera356,557,122 - 56,621,599 (+)NCBICelera
Cytogenetic Map3p14.3NCBI
HuRef356,639,978 - 56,704,257 (+)NCBIHuRef
CHM1_1356,541,909 - 56,606,605 (+)NCBICHM1_1
T2T-CHM13v2.0356,597,679 - 56,662,164 (+)NCBIT2T-CHM13v2.0
Ccdc66
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391427,203,047 - 27,230,467 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1427,203,047 - 27,230,417 (-)EnsemblGRCm39 Ensembl
GRCm381427,481,090 - 27,508,510 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1427,481,090 - 27,508,460 (-)EnsemblGRCm38mm10GRCm38
MGSCv371428,295,587 - 28,321,646 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361426,309,285 - 26,335,344 (-)NCBIMGSCv36mm8
Celera1423,714,021 - 23,740,767 (-)NCBICelera
Cytogenetic Map14A3NCBI
cM Map1416.51NCBI
Ccdc66
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554306,402,701 - 6,439,985 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554306,402,622 - 6,440,154 (+)NCBIChiLan1.0ChiLan1.0
CCDC66
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1356,560,095 - 56,613,332 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0356,504,388 - 56,557,617 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1357,720,490 - 57,773,326 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl357,720,490 - 57,773,326 (+)Ensemblpanpan1.1panPan2
CCDC66
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12033,714,224 - 33,758,846 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2033,714,224 - 33,758,799 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2033,641,146 - 33,685,866 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02033,985,924 - 34,030,861 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2033,984,868 - 34,030,822 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12033,430,153 - 33,474,916 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02033,789,795 - 33,834,395 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02033,963,454 - 34,008,410 (-)NCBIUU_Cfam_GSD_1.0
Ccdc66
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118173,888,938 - 173,916,511 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364737,027,495 - 7,055,028 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049364737,027,543 - 7,054,079 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC66
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1338,438,720 - 38,492,430 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11338,438,669 - 38,493,212 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21342,284,146 - 42,337,983 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC66
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12217,902,132 - 17,958,962 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2217,909,006 - 17,963,527 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041148,913,314 - 148,970,204 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc66
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624822617,862 - 655,803 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624822625,327 - 658,528 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ccdc66
121 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:229
Count of miRNA genes:94
Interacting mature miRNAs:104
Transcripts:ENSRNOT00000039311, ENSRNOT00000072414, ENSRNOT00000074368
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2325838Bp347Blood pressure QTL 3470.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1613080679Rat
1357403Slep4Serum leptin concentration QTL 43.91blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1619639137Rat
1600369Hcas8Hepatocarcinoma susceptibility QTL 8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)16122477621Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126727669Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126727669Rat
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16126727669Rat
9590151Scort8Serum corticosterone level QTL 88.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)16130836262Rat
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16132139025Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133418960Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139533930Rat
631561Hcuc2Hepatic copper content QTL 22.8liver copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16143534949Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
1549842Bp248Blood pressure QTL 2480.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)163802452995463Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683223646053497Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
12903278Am16Aortic mass QTL 160.019aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)168323802995225Rat
12903279Cm115Cardiac mass QTL 1150.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)168323802995225Rat
12903281Cm116Cardiac mass QTL 1160.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)168323802995225Rat
12903952Cm117Cardiac mass QTL 1170.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)168323802995225Rat
12903954Bw186Body weight QTL 1860.011body mass (VT:0001259)body weight (CMO:0000012)168323802995225Rat
2301404Bp321Blood pressure QTL 3210.05arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)168323802995225Rat
12903955Kidm69Kidney mass QTL 690.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)168323804227609Rat

Markers in Region
D16Chm2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2162,682,180 - 2,682,388 (+)MAPPERmRatBN7.2
Rnor_6.0163,127,385 - 3,127,592NCBIRnor6.0
Rnor_5.0163,095,605 - 3,095,812UniSTSRnor5.0
RGSC_v3.4162,764,956 - 2,765,163UniSTSRGSC3.4
Celera162,647,000 - 2,647,207UniSTS
Cytogenetic Map16p16UniSTS
RH127835  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2162,662,735 - 2,662,930 (+)MAPPERmRatBN7.2
Rnor_6.0163,107,719 - 3,107,913NCBIRnor6.0
Rnor_5.0163,075,527 - 3,075,721UniSTSRnor5.0
RGSC_v3.4162,747,527 - 2,747,721UniSTSRGSC3.4
Celera162,627,555 - 2,627,749UniSTS
RH 3.4 Map1616.3UniSTS
Cytogenetic Map16p16UniSTS
RH128166  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2162,662,312 - 2,662,530 (+)MAPPERmRatBN7.2
Rnor_6.0163,107,296 - 3,107,513NCBIRnor6.0
Rnor_5.0163,075,104 - 3,075,321UniSTSRnor5.0
RGSC_v3.4162,747,104 - 2,747,321UniSTSRGSC3.4
Celera162,627,132 - 2,627,349UniSTS
RH 3.4 Map165.2UniSTS
Cytogenetic Map16p16UniSTS
RH131215  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2162,670,862 - 2,671,079 (+)MAPPERmRatBN7.2
Rnor_6.0163,115,976 - 3,116,192NCBIRnor6.0
Rnor_5.0163,084,196 - 3,084,412UniSTSRnor5.0
RGSC_v3.4162,753,638 - 2,753,854UniSTSRGSC3.4
Celera162,635,683 - 2,635,899UniSTS
RH 3.4 Map1616.3UniSTS
Cytogenetic Map16p16UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 18 13 4 17 4 74 23 39 11
Low 2 25 44 37 2 37 8 11 12 2 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003752858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000039311   ⟹   ENSRNOP00000036334
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl162,662,131 - 2,694,006 (-)Ensembl
Rnor_6.0 Ensembl163,110,239 - 3,139,177 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000095208   ⟹   ENSRNOP00000093577
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl162,662,131 - 2,694,023 (-)Ensembl
RefSeq Acc Id: XM_039095197   ⟹   XP_038951125
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2162,662,125 - 2,694,031 (-)NCBI
RefSeq Acc Id: XM_039095198   ⟹   XP_038951126
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2162,662,136 - 2,694,031 (-)NCBI
RefSeq Acc Id: XM_039095199   ⟹   XP_038951127
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2162,662,136 - 2,694,031 (-)NCBI
RefSeq Acc Id: XM_039095200   ⟹   XP_038951128
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2162,662,136 - 2,692,403 (-)NCBI
RefSeq Acc Id: XM_039095201   ⟹   XP_038951129
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2162,662,136 - 2,693,865 (-)NCBI
RefSeq Acc Id: XM_039095202   ⟹   XP_038951130
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2162,662,136 - 2,694,023 (-)NCBI
RefSeq Acc Id: XM_039095203   ⟹   XP_038951131
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2162,662,136 - 2,692,397 (-)NCBI
RefSeq Acc Id: XM_039095204   ⟹   XP_038951132
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2162,662,136 - 2,693,766 (-)NCBI
RefSeq Acc Id: XM_039095205   ⟹   XP_038951133
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2162,662,136 - 2,694,023 (-)NCBI
RefSeq Acc Id: XM_039095207   ⟹   XP_038951135
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2162,662,136 - 2,693,967 (-)NCBI
RefSeq Acc Id: XM_039095208   ⟹   XP_038951136
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2162,662,136 - 2,694,031 (-)NCBI
RefSeq Acc Id: XM_039095209   ⟹   XP_038951137
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2162,662,136 - 2,694,031 (-)NCBI
RefSeq Acc Id: XM_039095210   ⟹   XP_038951138
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2162,662,136 - 2,694,031 (-)NCBI
RefSeq Acc Id: XM_039095211   ⟹   XP_038951139
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2162,662,136 - 2,694,031 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000036334   ⟸   ENSRNOT00000039311
RefSeq Acc Id: XP_038951125   ⟸   XM_039095197
- Peptide Label: isoform X1
- UniProtKB: D3ZB56 (UniProtKB/TrEMBL),   A0A8I6AK35 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951139   ⟸   XM_039095211
- Peptide Label: isoform X8
- UniProtKB: A0A8I6AK35 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951138   ⟸   XM_039095210
- Peptide Label: isoform X7
- UniProtKB: A0A8I6AK35 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951137   ⟸   XM_039095209
- Peptide Label: isoform X6
- UniProtKB: A0A8I6AK35 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951136   ⟸   XM_039095208
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AK35 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951126   ⟸   XM_039095198
- Peptide Label: isoform X2
- UniProtKB: A6KML1 (UniProtKB/TrEMBL),   A0A8I6AK35 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951127   ⟸   XM_039095199
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AK35 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951133   ⟸   XM_039095205
- Peptide Label: isoform X4
- UniProtKB: A0A8I6AK35 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951130   ⟸   XM_039095202
- Peptide Label: isoform X4
- UniProtKB: A0A8I6AK35 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951135   ⟸   XM_039095207
- Peptide Label: isoform X4
- UniProtKB: A0A8I6AK35 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951129   ⟸   XM_039095201
- Peptide Label: isoform X4
- UniProtKB: A0A8I6AK35 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951132   ⟸   XM_039095204
- Peptide Label: isoform X4
- UniProtKB: A0A8I6AK35 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951128   ⟸   XM_039095200
- Peptide Label: isoform X4
- UniProtKB: A0A8I6AK35 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951131   ⟸   XM_039095203
- Peptide Label: isoform X4
- UniProtKB: A0A8I6AK35 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000093577   ⟸   ENSRNOT00000095208
Protein Domains
CCDC66

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZB56-F1-model_v2 AlphaFold D3ZB56 1-803 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1560873 AgrOrtholog
BioCyc Gene G2FUF-12237 BioCyc
Ensembl Genes ENSRNOG00000028380 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000036334 ENTREZGENE
  ENSRNOP00000036334.7 UniProtKB/TrEMBL
  ENSRNOP00000093577 ENTREZGENE
  ENSRNOP00000093577.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000039311 ENTREZGENE
  ENSRNOT00000039311.8 UniProtKB/TrEMBL
  ENSRNOT00000095208 ENTREZGENE
  ENSRNOT00000095208.1 UniProtKB/TrEMBL
InterPro CCDC66_dom UniProtKB/TrEMBL
NCBI Gene 306238 ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 66 UniProtKB/TrEMBL
  PTHR22736 UniProtKB/TrEMBL
Pfam CCDC66 UniProtKB/TrEMBL
PhenoGen Ccdc66 PhenoGen
UniProt A0A8I6AK35 ENTREZGENE, UniProtKB/TrEMBL
  A6KML1 ENTREZGENE, UniProtKB/TrEMBL
  D3ZB56 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-11-25 Ccdc66  coiled-coil domain containing 66  RGD1560873  similar to RIKEN cDNA E230015L20 gene  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1560873  similar to RIKEN cDNA E230015L20 gene   RGD1560873_predicted  similar to RIKEN cDNA E230015L20 gene (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1560873_predicted  similar to RIKEN cDNA E230015L20 gene (predicted)  LOC306238  similar to RIKEN cDNA E230015L20 gene  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC306238  similar to RIKEN cDNA E230015L20 gene      Symbol and Name status set to provisional 70820 PROVISIONAL