![]()
Imported Disease Annotations - MGITerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | retinitis pigmentosa | | ISS | RGD:1620471 | 13592920 | OMIM:268000 | MouseDO | | |
|
![]()
Imported Disease Annotations - MGITerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | retinitis pigmentosa | | ISS | RGD:1620471 | 13592920 | OMIM:268000 | MouseDO | | |
|
|
|
|
|
|
|
|
|
|
# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
3. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
Ccdc66 (Rattus norvegicus - Norway rat) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
CCDC66 (Homo sapiens - human) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Ccdc66 (Mus musculus - house mouse) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Ccdc66 (Chinchilla lanigera - long-tailed chinchilla) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
CCDC66 (Pan paniscus - bonobo/pygmy chimpanzee) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
CCDC66 (Canis lupus familiaris - dog) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Ccdc66 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
CCDC66 (Sus scrofa - pig) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
CCDC66 (Chlorocebus sabaeus - green monkey) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Ccdc66 (Heterocephalus glaber - naked mole-rat) |
|
.
Variants in Ccdc66
121 total Variants ![]() |
The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
D16Chm2 |
|
||||||||||||||||||||||||||||||||||||||||
RH127835 |
|
||||||||||||||||||||||||||||||||||||||||
RH128166 |
|
||||||||||||||||||||||||||||||||||||||||
RH131215 |
|
alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 1 | 18 | 13 | 4 | 17 | 4 | 74 | 23 | 39 | 11 | |||
Low | 2 | 25 | 44 | 37 | 2 | 37 | 8 | 11 | 12 | 2 | 8 | ||
Below cutoff |
RefSeq Transcripts | XM_003752858 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_006222083 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006222084 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006222086 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006222087 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006222089 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_008771024 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_008771025 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_008771026 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_008771027 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_008771028 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_008771029 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017600276 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039095197 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039095198 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039095199 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039095200 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039095201 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039095202 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039095203 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039095204 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039095205 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039095207 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039095208 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039095209 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039095210 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039095211 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | CH474067 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
JACYVU010000273 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000039311 ⟹ ENSRNOP00000036334 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | ENSRNOT00000095208 ⟹ ENSRNOP00000093577 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_039095197 ⟹ XP_038951125 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_039095198 ⟹ XP_038951126 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_039095199 ⟹ XP_038951127 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_039095200 ⟹ XP_038951128 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_039095201 ⟹ XP_038951129 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_039095202 ⟹ XP_038951130 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_039095203 ⟹ XP_038951131 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_039095204 ⟹ XP_038951132 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_039095205 ⟹ XP_038951133 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_039095207 ⟹ XP_038951135 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_039095208 ⟹ XP_038951136 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_039095209 ⟹ XP_038951137 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_039095210 ⟹ XP_038951138 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_039095211 ⟹ XP_038951139 | ||||||||
Type: | CODING | ||||||||
Position: |
|
Protein RefSeqs | XP_038951125 | (Get FASTA) | NCBI Sequence Viewer |
XP_038951126 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038951127 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038951128 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038951129 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038951130 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038951131 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038951132 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038951133 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038951135 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038951136 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038951137 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038951138 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038951139 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | EDL75057 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | ENSRNOP00000036334 ⟸ ENSRNOT00000039311 |
RefSeq Acc Id: | XP_038951125 ⟸ XM_039095197 |
- Peptide Label: | isoform X1 |
- UniProtKB: | D3ZB56 (UniProtKB/TrEMBL), A0A8I6AK35 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038951139 ⟸ XM_039095211 |
- Peptide Label: | isoform X8 |
- UniProtKB: | A0A8I6AK35 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038951138 ⟸ XM_039095210 |
- Peptide Label: | isoform X7 |
- UniProtKB: | A0A8I6AK35 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038951137 ⟸ XM_039095209 |
- Peptide Label: | isoform X6 |
- UniProtKB: | A0A8I6AK35 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038951136 ⟸ XM_039095208 |
- Peptide Label: | isoform X5 |
- UniProtKB: | A0A8I6AK35 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038951126 ⟸ XM_039095198 |
- Peptide Label: | isoform X2 |
- UniProtKB: | A6KML1 (UniProtKB/TrEMBL), A0A8I6AK35 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038951127 ⟸ XM_039095199 |
- Peptide Label: | isoform X3 |
- UniProtKB: | A0A8I6AK35 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038951133 ⟸ XM_039095205 |
- Peptide Label: | isoform X4 |
- UniProtKB: | A0A8I6AK35 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038951130 ⟸ XM_039095202 |
- Peptide Label: | isoform X4 |
- UniProtKB: | A0A8I6AK35 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038951135 ⟸ XM_039095207 |
- Peptide Label: | isoform X4 |
- UniProtKB: | A0A8I6AK35 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038951129 ⟸ XM_039095201 |
- Peptide Label: | isoform X4 |
- UniProtKB: | A0A8I6AK35 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038951132 ⟸ XM_039095204 |
- Peptide Label: | isoform X4 |
- UniProtKB: | A0A8I6AK35 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038951128 ⟸ XM_039095200 |
- Peptide Label: | isoform X4 |
- UniProtKB: | A0A8I6AK35 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038951131 ⟸ XM_039095203 |
- Peptide Label: | isoform X4 |
- UniProtKB: | A0A8I6AK35 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | ENSRNOP00000093577 ⟸ ENSRNOT00000095208 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-D3ZB56-F1-model_v2 | AlphaFold | D3ZB56 | 1-803 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
Database | Acc Id | Source(s) |
AGR Gene | RGD:1560873 | AgrOrtholog |
BioCyc Gene | G2FUF-12237 | BioCyc |
Ensembl Genes | ENSRNOG00000028380 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Protein | ENSRNOP00000036334 | ENTREZGENE |
ENSRNOP00000036334.7 | UniProtKB/TrEMBL | |
ENSRNOP00000093577 | ENTREZGENE | |
ENSRNOP00000093577.1 | UniProtKB/TrEMBL | |
Ensembl Transcript | ENSRNOT00000039311 | ENTREZGENE |
ENSRNOT00000039311.8 | UniProtKB/TrEMBL | |
ENSRNOT00000095208 | ENTREZGENE | |
ENSRNOT00000095208.1 | UniProtKB/TrEMBL | |
InterPro | CCDC66_dom | UniProtKB/TrEMBL |
NCBI Gene | 306238 | ENTREZGENE |
PANTHER | COILED-COIL DOMAIN-CONTAINING PROTEIN 66 | UniProtKB/TrEMBL |
PTHR22736 | UniProtKB/TrEMBL | |
Pfam | CCDC66 | UniProtKB/TrEMBL |
PhenoGen | Ccdc66 | PhenoGen |
UniProt | A0A8I6AK35 | ENTREZGENE, UniProtKB/TrEMBL |
A6KML1 | ENTREZGENE, UniProtKB/TrEMBL | |
D3ZB56 | ENTREZGENE, UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
---|---|---|---|---|---|---|---|
2013-11-25 | Ccdc66 | coiled-coil domain containing 66 | RGD1560873 | similar to RIKEN cDNA E230015L20 gene | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2008-04-30 | RGD1560873 | similar to RIKEN cDNA E230015L20 gene | RGD1560873_predicted | similar to RIKEN cDNA E230015L20 gene (predicted) | 'predicted' is removed | 2292626 | APPROVED |
2006-03-07 | RGD1560873_predicted | similar to RIKEN cDNA E230015L20 gene (predicted) | LOC306238 | similar to RIKEN cDNA E230015L20 gene | Symbol and Name status set to approved | 1299863 | APPROVED |
2006-02-09 | LOC306238 | similar to RIKEN cDNA E230015L20 gene | Symbol and Name status set to provisional | 70820 | PROVISIONAL |