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Gene: Rps6ka6 (ribosomal protein S6 kinase A6) Rattus norvegicus

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Symbol:

Rps6ka6

Name:

ribosomal protein S6 kinase A6

RGD ID:

1560817

Description:

Predicted to enable ribosomal protein S6 kinase activity. Predicted to be involved in several processes, including intracellular signal transduction; negative regulation of ERK1 and ERK2 cascade; and negative regulation of mesoderm development. Predicted to be located in fibrillar center and mitochondrion. Predicted to be active in cytoplasm; nucleoplasm; and synapse. Orthologous to human RPS6KA6 (ribosomal protein S6 kinase A6); PARTICIPATES IN the extracellular signal-regulated Raf/Mek/Erk signaling pathway; long term potentiation; mitogen activated protein kinase signaling pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC317203; RGD1560817; ribosomal protein S6 kinase alpha-6; ribosomal protein S6 kinase polypeptide 6; similar to ribosomal protein S6 kinase polypeptide 6

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RPS6KA6 (ribosomal protein S6 kinase A6)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Rps6ka6 (ribosomal protein S6 kinase polypeptide 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rps6ka6 (ribosomal protein S6 kinase A6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RPS6KA6 (ribosomal protein S6 kinase A6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RPS6KA6 (ribosomal protein S6 kinase A6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rps6ka6 (ribosomal protein S6 kinase A6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RPS6KA6 (ribosomal protein S6 kinase A6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RPS6KA6 (ribosomal protein S6 kinase A6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rps6ka6 (ribosomal protein S6 kinase A6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	RPS6KA6 (ribosomal protein S6 kinase A6)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	RPS6KA6 (ribosomal protein S6 kinase A6)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Rps6ka6 (ribosomal protein S6 kinase polypeptide 6)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Rps6ka6 (ribosomal protein S6 kinase polypeptide 6)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rps6kal (ribosomal protein S6 kinase a, like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	rps6kal (ribosomal protein S6 kinase a, like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|PhylomeDB)
Caenorhabditis elegans (roundworm):	rskn-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	rskn-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	S6kII	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	S6kII	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	YPK3	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	rps6ka6	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	rps6ka6	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	80,537,723 - 80,638,910 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	80,537,723 - 80,692,148 (-)	Ensembl				GRCr8
mRatBN7.2	X	76,353,316 - 76,454,502 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	76,353,760 - 76,454,484 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	77,992,847 - 78,092,386 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	81,429,108 - 81,528,641 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	79,015,930 - 79,115,471 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	82,641,679 - 82,743,771 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	82,641,687 - 82,743,753 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	82,609,740 - 82,710,719 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	99,798,274 - 99,901,585 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	77,660,385 - 77,759,926 (-)	NCBI		Celera
Cytogenetic Map	X	q31	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

autosomal hemophilia A (ISO)

factor VIII deficiency (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

afimoxifene (ISO)

Aflatoxin B2 alpha (ISO)

alpha-Zearalanol (EXP)

avobenzone (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

cisplatin (ISO)

copper atom (ISO)

copper(0) (ISO)

diuron (EXP)

dorsomorphin (ISO)

gentamycin (EXP)

methylmercury chloride (ISO)

nickel atom (ISO)

panobinostat (ISO)

paracetamol (EXP)

paraquat (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (EXP)

SB 431542 (ISO)

sodium arsenite (ISO)

streptozocin (ISO)

tetrachloromethane (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

triptonide (ISO)

zinc sulfate (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA damage response, signal transduction by p53 class mediator (IBA,ISO)

intracellular signal transduction (IEA)

negative regulation of embryonic development (ISO)

negative regulation of ERK1 and ERK2 cascade (ISO)

negative regulation of mesoderm development (ISO)

TORC1 signaling (IBA)

Cellular Component

cytoplasm (IBA)

fibrillar center (ISO)

mitochondrion (ISO)

nucleolus (ISO)

nucleoplasm (IBA,ISO)

synapse (ISO)

Molecular Function

ATP binding (IEA)

kinase activity (IEA)

magnesium ion binding (IEA)

nucleotide binding (IEA)

protein binding (ISO)

protein kinase activity (IEA)

protein serine kinase activity (IEA)

protein serine/threonine kinase activity (IEA)

ribosomal protein S6 kinase activity (IBA)

transferase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

long term potentiation (IEA)

mitogen activated protein kinase signaling pathway (IEA)

mTOR signaling pathway (IEA)

neurotrophic factor signaling pathway (IEA)

the extracellular signal-regulated Raf/Mek/Erk signaling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	MAPKAP kinases - MKs - two's company, three's a crowd.	Gaestel M Nat Rev Mol Cell Biol. 2006 Feb;7(2):120-30.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:15042092	PMID:15121846

Genomics

Comparative Map Data

Rps6ka6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	80,537,723 - 80,638,910 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	80,537,723 - 80,692,148 (-)	Ensembl				GRCr8
mRatBN7.2	X	76,353,316 - 76,454,502 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	76,353,760 - 76,454,484 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	77,992,847 - 78,092,386 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	81,429,108 - 81,528,641 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	79,015,930 - 79,115,471 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	82,641,679 - 82,743,771 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	82,641,687 - 82,743,753 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	82,609,740 - 82,710,719 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	99,798,274 - 99,901,585 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	77,660,385 - 77,759,926 (-)	NCBI		Celera
Cytogenetic Map	X	q31	NCBI

RPS6KA6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	84,058,346 - 84,188,499 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	84,058,346 - 84,206,356 (-)	Ensembl			hg38	GRCh38
GRCh37	X	83,313,354 - 83,443,207 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	83,205,640 - 84,362,350 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	X	83,125,128 - 83,254,098	NCBI
Celera	X	83,550,763 - 83,681,714 (-)	NCBI		Celera
Cytogenetic Map	X	q21.1	NCBI
HuRef	X	76,885,898 - 76,994,131 (-)	NCBI		HuRef
CHM1_1	X	83,207,273 - 83,336,842 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	X	82,493,471 - 82,624,675 (-)	NCBI		T2T-CHM13v2.0

Rps6ka6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	110,297,534 - 110,447,794 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	110,297,889 - 110,447,656 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	X	111,387,837 - 111,538,097 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	111,388,192 - 111,537,959 (-)	Ensembl			mm10	GRCm38
MGSCv37	X	108,501,801 - 108,651,554 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	X	107,505,136 - 107,654,889 (-)	NCBI		MGSCv36	mm8
Celera	X	98,071,699 - 98,217,087 (-)	NCBI		Celera
Cytogenetic Map	X	E1	NCBI
cM Map	X	48.2	NCBI

Rps6ka6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955529	3,149,407 - 3,296,105 (-)	Ensembl
ChiLan1.0	NW_004955529	3,115,652 - 3,296,505 (-)	NCBI	ChiLan1.0	ChiLan1.0

RPS6KA6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	83,538,403 - 83,668,923 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	83,542,013 - 83,672,536 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	73,131,457 - 73,261,906 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	83,242,717 - 83,373,450 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	83,243,957 - 83,373,194 (-)	Ensembl			panPan2	panpan1.1

RPS6KA6
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	64,915,871 - 65,111,095 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	64,921,230 - 65,111,116 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	55,672,366 - 55,868,014 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	66,239,816 - 66,439,714 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	66,244,041 - 66,439,719 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	63,893,818 - 64,089,422 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	65,525,394 - 65,721,255 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	65,099,716 - 65,295,248 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Rps6ka6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	58,533,568 - 58,632,733 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936547	4,857,685 - 4,975,222 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936547	4,846,012 - 4,952,773 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RPS6KA6
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	67,236,473 - 67,415,010 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	X	67,234,684 - 67,415,114 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	77,099,566 - 77,278,238 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RPS6KA6
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	72,942,352 - 73,081,174 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	72,942,648 - 73,080,887 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666067	7,794,891 - 7,927,152 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rps6ka6
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624852	4,287,855 - 4,482,373 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624852	4,287,104 - 4,492,128 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Variants

Variants in Rps6ka6
445 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	176
Count of miRNA genes:	148
Interacting mature miRNAs:	158
Transcripts:	ENSRNOT00000003512
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61430	Cia18	Collagen induced arthritis QTL 18	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	80434318	125434318	Rat
738035	Stresp1	Stress response QTL 1	4.96	0.000011	stress-related behavior trait (VT:0010451)	defensive burying - coping	X	45182909	117740458	Rat
1598837	Memor13	Memory QTL 13	3.2		exploratory behavior trait (VT:0010471)	difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	44930883	89930883	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	8	57	144	91	90	59	45	59	6	294	131	10	122	81	92	31	15	15

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001191721	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008773343	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008773344	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099725	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099731	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473969	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000003512 ⟹ ENSRNOP00000003512

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	80,539,352 - 80,673,547 (-)	Ensembl
mRatBN7.2 Ensembl	X	76,354,945 - 76,454,484 (-)	Ensembl
Rnor_6.0 Ensembl	X	82,643,311 - 82,743,753 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000081625 ⟹ ENSRNOP00000070197

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	80,538,351 - 80,618,379 (-)	Ensembl
mRatBN7.2 Ensembl	X	76,353,760 - 76,434,314 (-)	Ensembl
Rnor_6.0 Ensembl	X	82,641,687 - 82,699,487 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097548 ⟹ ENSRNOP00000096344

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	80,537,723 - 80,637,007 (-)	Ensembl
mRatBN7.2 Ensembl	X	76,353,760 - 76,436,912 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000115013 ⟹ ENSRNOP00000079575

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	80,537,723 - 80,692,148 (-)	Ensembl
mRatBN7.2 Ensembl	X	76,353,760 - 76,454,484 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000144181 ⟹ ENSRNOP00000101596

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	80,537,723 - 80,619,250 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000147711 ⟹ ENSRNOP00000102256

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	80,537,723 - 80,673,547 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000158353 ⟹ ENSRNOP00000103416

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	80,537,723 - 80,618,941 (-)	Ensembl

RefSeq Acc Id:

NM_001191721 ⟹ NP_001178650

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	80,537,723 - 80,638,910 (-)	NCBI
mRatBN7.2	X	76,353,316 - 76,454,502 (-)	NCBI
Rnor_6.0	X	82,643,311 - 82,743,753 (-)	NCBI
Rnor_5.0	X	82,609,740 - 82,710,719 (-)	NCBI
Celera	X	77,660,385 - 77,759,926 (-)	NCBI

Sequence:

show sequence

ATGCTGAATTTTAGAAGGACACGACACACACCATCTGGCCACAGGTCCAACTCTAGCTTGAACC
TGTTCTGTTGCTTTCCGTTTTTTGGATGTCGTCGACAATCCAGGAGTCGGCAGCGGGCGGGGAC
CCCTGTGGTCCCTCTTTTGAGGTACCCGCCTTTGGCGAGGTCAGCAGTCACCCAGCGCGAGTCC
TGGTCCTACGAAGAAGACCACGAGCCAGCTCAGCAGGCGGGATGCATGCTGGTGCTGGGGACAA
GCAGCTTCTTTTCGAGTGTTCCTGAAGCGGCGATGCTACCATTCGCTCCTGTGGAGGATCCCTG
GGACGAAGAAATGGAGGTGTTCGGCAGTGGCAGCACGAGCAGTAGCGAGCCACAGATTGTGTTT
ACCATGAAGACTGCGGCGATGGTTATTCGACAGCATGAACACAAAGAGGTAAATGATCTTAAAA
TGGTTGATGAACCAATGGATGAGGGAGAGCCAGTTTTTTGCCGGCGGGAAGATTTGGTTAAAGA
AATCCCTATTACACAGCATGTTAAAGAAGGATATGAGAAAGCAGATCCCGCACAGTTCGACTTG
CTCAAGGTTCTTGGTCAGGGATCTTTTGGAAAGGTTTTTCTTGTTAGAAAGAAGACTGGTCCTG
ATGCTGGGCAGCTCTATGCAATGAAGGTGTTAAGAAAAGCTTCTTTGAAGGTTCGAGACCGTGT
TCGCACAAAGATGGAGAGGGATATACTGGTAGAAGTAAATCATCCTTTTATCGTCAAACTGCAC
TATGCTTTTCAGACTGAAGGGAAGCTGTACTTAATATTGGATTTCCTCAGGGGAGGAGATGTCT
TCACAAGATTATCCAAAGAGGTTCTTTTTACAGAGGAAGATGTGAAATTCTACCTTGCGGAATT
GGCCCTAGCTTTGGATCATCTGCATCGATTAGGAATTGTGTATAGAGACCTGAAGCCAGAGAAC
ATCTTGCTTGACGAAATAGGACATATCAAGTTAACAGATTTTGGGCTGAGCAAAGAGTCAGTGG
ATCAAGAAAAGAAAGCCTACTCCTTCTGTGGTACTGTAGAATACATGGCCCCCGAAGTAGTAAA
TCGAAGAGGCCATTCTCAGAGTGCTGATTGGTGGTCATATGGTGTACTTATGTTTGAAATGCTT
ACTGGCACATTGCCATTTCAAGGGAAAGACAGAAATGAGACCATGAATATGATACTGAAAGCAA
AACTTGGAATGCCCCAATTCCTTAGTGCTGAAGCACAAAGCCTTTTAAGGATGTTATTCAAAAG
GAATCCAGCAAATAGATTGGGATCAGAAGGAGTTGAAGAAGTCAAAAGACATGCTTTTTTCTCT
TCCATTGACTGGAATAAATTATATAAAAGAGAAGTTCAGCCTCCTTTCAGACCTGCTTCTGGAA
AACCAGATGATACTTTTTGTTTTGATCCTGAATTTACTGCCAAAACACCTAAAGATTCTCCTGG
TTTGCCAGCCAGCGCAAATGCTCATCAACTCTTCAAAGGATTCAGTTTTGTTGCGACTTCTATC
GCAGAAGAATATAAAATCACTCCTGTTACAAGTTCAAATGTATTGCCAATCGTTCAGATAAATG
GAAATGCTGCTCAATTTAGTGAAGCGTATGAGTTGAAAGAGGATATTGGTATTGGATCTTACTC
TGTTTGCAAGCGATGCATACATTCAGCTTCCAACATGGAATTTGCAGTTAAGATCATTGATAAA
AATAAGAGAGACCCCTCAGAAGAAATTGAAATTCTGATGCGCTATGGACAACATCCCAACATTA
TCTCTTTAAAGGAGGTCTTTGATGATGGGAAATATGTTTACCTTGTTACGGACTTGATGAAAGG
AGGAGAACTTCTGGATCGCATTCTCAAAAAGAAATGTTTCTCAGAGCAGGAAGCTAGTAATGTG
CTGTATGTAATTACCAAGACAGTTGAATACCTTCATTCTCAAGGAGTCGTTCATCGTGATCTTA
AGCCCAGTAATATTTTGTACATGGATGAATCAGGCCATCCAGATTCAATCAAGATCTGTGACTT
TGGATTTGCAAAACAGCTTCGAGGAGAAAATGGACTTCTGTTAACTCCATGCTACACTGCAAAC
TTTGTAGCCCCTGAGGTTCTCACTCAACAGGGATATGATGCTGCCTGTGATATTTGGAGCTTAG
GAGTCCTTTTGTACACAATGTTGGCTGGCTACACTCCATTTTCAAATGGACCCAATGATACTCC
TGAGGAAATACTTCTGCGCATAGGCAATGGGAGGTTCTCTTTGAGTGGTGGAATCTGGGATAAT
ATTTCACGTGGAGCAAAGGATTTGCTTTCTCATATGCTTCACATGGACCCACATCAGCGTTATA
CTGCTGAACAAGTATTAAAGCACCCTTGGATAACCCAAAGAGAACAACTGCCGCGTCATCAGCC
AACCTCAGATGACCCGCCACAGGAAGCAGTGGCTGCAGCATATTCTGTTTTGGCTCGGAACCAG
AACAGGCATCCAATCCTGGAGCCTGTTGCTGCTTCACGTTTAGCTCAGAGACGTAACATGAAAA
AGCGAACATCAACTGGCTTATGA

hide sequence

RefSeq Acc Id:

XM_008773343 ⟹ XP_008771565

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	80,537,723 - 80,618,944 (-)	NCBI
mRatBN7.2	X	76,354,824 - 76,434,545 (-)	NCBI
Rnor_6.0	X	82,641,679 - 82,743,771 (-)	NCBI

Sequence:

show sequence

ATAAATCCACTTTGAATCATGCTGAATTTTAGAAGGACACGACACACACCATCTGGCCACAGGT
CCAACTCTAGCTTGAACCTGTTCTGTTGCTTTCCGTTTTTTGGATGTCGTCGACAATCCAGGAG
TCGGCAGCGGGCGGGGACCCCTGTGGTCCCTCTTTTGAGGTACCCGCCTTTGGCGAGGTCAGCA
GTCACCCAGCGCGAGTCCTGGTCCTACGAAGAAGACCACGAGCCAGCTCAGCAGGCGGGATGCA
TGCTGGTGCTGGGGACAAGCAGCTTCTTTTCGAGTGTTCCTGAAGCGGCGATGCTACCATTCGC
TCCTGTGGAGGATCCCTGGGACGAAGAAATGGAGGTGTTCGGCAGTGGCAGCACGAGCAGTAGC
GAGCCACAGATTGTGTTTACCATGAAGACTGCGGCGATGGTTATTCGACAGCATGAACACAAAG
AGGTAAATGATCTTAAAATGGTTGATGAACCAATGGATGAGGGAGAGCCAGTTTTTTGCCGGCG
GGAAGATTTGGTTAAAGAAATCCCTATTACACAGCATGTTAAAGAAGGATATGAGAAAGCAGAT
CCCGCACAGTTCGACTTGCTCAAGGTTCTTGGTCAGGGATCTTTTGGAAAGGTTTTTCTTGTTA
GAAAGAAGACTGGTCCTGATGCTGGGCAGCTCTATGCAATGAAGGTGTTAAGAAAAGCTTCTTT
GAAGGTTCGAGACCGTGTTCGCACAAAGATGGAGAGGGATATACTGGTAGAAGTAAATCATCCT
TTTATCGTCAAACTGCACTATGCTTTTCAGACTGAAGGGAAGCTGTACTTAATATTGGATTTCC
TCAGGGGAGGAGATGTCTTCACAAGATTATCCAAAGAGGTTCTTTTTACAGAGGAAGATGTGAA
ATTCTACCTTGCGGAATTGGCCCTAGCTTTGGATCATCTGCATCGATTAGGAATTGTGTATAGA
GACCTGAAGCCAGAGAACATCTTGCTTGACGAAATAGGACATATCAAGTTAACAGATTTTGGGC
TGAGCAAAGAGTCAGTGGATCAAGAAAAGAAAGCCTACTCCTTCTGTGGTACTGTAGAATACAT
GGCCCCCGAAGTAGTAAATCGAAGAGGCCATTCTCAGAGTGCTGATTGGTGGTCATATGGTGTA
CTTATGTTTGAAATGCTTACTGGCACATTGCCATTTCAAGGGAAAGACAGAAATGAGACCATGA
ATATGATACTGAAAGCAAAACTTGGAATGCCCCAATTCCTTAGTGCTGAAGCACAAAGCCTTTT
AAGGATGTTATTCAAAAGGAATCCAGCAAATAGATTGGGATCAGAAGGAGTTGAAGAAGTCAAA
AGACATGCTTTTTTCTCTTCCATTGACTGGAATAAATTATATAAAAGAGAAGTTCAGCCTCCTT
TCAGACCTGCTTCTGGAAAACCAGATGATACTTTTTGTTTTGATCCTGAATTTACTGCCAAAAC
ACCTAAAGATTCTCCTGGTTTGCCAGCCAGCGCAAATGCTCATCAACTCTTCAAAGGATTCAGT
TTTGTTGCGACTTCTATCGCAGAAGAATATAAAATCACTCCTGTTACAAGTTCAAATGTATTGC
CAATCGTTCAGATAAATGGAAATGCTGCTCAATTTAGTGAAGCGTATGAGTTGAAAGAGGATAT
TGGTATTGGATCTTACTCTGTTTGCAAGCGATGCATACATTCAGCTTCCAACATGGAATTTGCA
GTTAAGATCATTGATAAAAATAAGAGAGACCCCTCAGAAGAAATTGAAATTCTGATGCGCTATG
GACAACATCCCAACATTATCTCTTTAAAGGAGGTCTTTGATGATGGGAAATATGTTTACCTTGT
TACGGACTTGATGAAAGGAGGAGAACTTCTGGATCGCATTCTCAAAAAGAAATGTTTCTCAGAG
CAGGAAGCTAGTAATGTGCTGTATGTAATTACCAAGACAGTTGAATACCTTCATTCTCAAGGAG
TCGTTCATCGTGATCTTAAGCCCAGTAATATTTTGTACATGGATGAATCAGGCCATCCAGATTC
AATCAAGATCTGTGACTTTGGATTTGCAAAACAGCTTCGAGGAGAAAATGGACTTCTGTTAACT
CCATGCTACACTGCAAACTTTGTAGCCCCTGAGGTTCTCACTCAACAGGGATATGATGCTGCCT
GTGATATTTGGAGCTTAGGAGTCCTTTTGTACACAATGTTGGCTGGCTACACTCCATTTTCAAA
TGGACCCAATGATACTCCTGAGGAAATACTTCTGCGCATAGGCAATGGGAGGTTCTCTTTGAGT
GGTGGAATCTGGGATAATATTTCACGTGGAGCAAAGGATTTGCTTTCTCATATGCTTCACATGG
ACCCACATCAGCGTTATACTGCTGAACAAGTATTAAAGCACCCTTGGATAACCCAAAGAGAACA
ACTGCCGCGTCATCAGCCAACCTCAGATGACCCGCCACAGGTTGTTATGGAAGCAGTGGCTGCA
GCATATTCTGTTTTGGCTCGGAACCAGAACAGGCATCCAATCCTGGAGCCTGTTGCTGCTTCAC
GTTTAGCTCAGAGACGTAACATGAAAAAGCGAACATCAACTGGCTTATGAGTTCTAGTGTTCCT
CAGCTAACTGGATGAAGAGAAAATTAAATGTGTTGTGGGTTGGCTTTTTTGTTGTTGTTGTTGT
TTTGTTTTGTTTTTGTCTAATCTCATATCAAAGGTATTTTGTTTCCTGCCATATTACTTGAATA
TTCTGTTAAGCCTCTTTTGGAGAGGTTGGAATTTTAAACAAACATGCATAGGTCCGTAATATTC
ATACTATGTCATATTGCAGTAGTGTCCAAATGTTTGACTATGTAATTGATGTCTACAAGGTCTT
GTCTTCTCTGCACATTAACTTCCCAAATTCCTTTCAAAGTTAACCTATATTTATTATTTTACAT
AAATATGGGTTAGGAATTCATTAACACTAATCAAAATGCTTTTCATATGTTATAATGCTAAATA
ATATCAGTGTTTTACCATCATTTCCTAAAAAGTAACTTTTCTTCTTAAAAGAACAACAGAAGTA
TTCTAATAGCTTGTGCATAGCCAAAGCACTCGTCTGAGTCCATTTAGATACTAAATGTAGTAAA
ATAGTTTGGTGCCTGAGCAAAATACATTCGTGCTAATATATGAATTCCTGATATGGTTGGTGCC
AAAGTTTTGATAGAATAATTAAATCACTAATAATTTGTGCGGACAGATTTGTATATTATCCATA
AGTGGCTTCATCTAGAGAAAGTTTCCATGAGGCTTCTAATGTTTTACAGCTAATGAAGTTGTAG
TGAAAGTGAAGATGTTTTTATCCAAAGGTTTCATGTTGGTGTTGTAATCTCCTAAAAATGTCAT
AGTTAAGCCTTTGAATATGCACTTCATGGTGTTGATGCGATCTTGGTGTTACCTAAGCTGACTT
TGAAGTTAACCATTGAATGAATCATCTTTCCCCTGTATACGTGAAGCTACACTGTGTTATTCCT
GATTTCCATGTGGTTTGAGCTACAGTGTAGCAGCATATTGATCTACCTTGAATCCTATGGTGAT
GTAGTTGAAGTTTTACTATAGTGGACTTGTGCACTTAGCACATATGATACCGTATAATGTATTT
CAGTAAGCATCAGACAATTCTACATACTTCAAGAAAATAATTTCTCATTTTAAATAGGAAACAA
TATTGATGATTGACACAGAAATTTGAGTACATTTAAAAAACATTTATAATAAACTGGCCAAATT
GGCATTATTAAATTTATGATTCAGAACCAGTGTGTAATGTGTATTGTTTTCATCAAATGCTGAA
AATTTAAAAAGTCATTTTATATTGTTAAGGAAAATACCATTAACTACTACTACTGACAGAAAAA
ATTCATGAATGTAAACTGGAGAGTATCAGCTTTGTTTAGTGACTAGAAATGTATCACTTGTGTG
TGCTAGGTGTACTGTTTGCTGTGCATTTTTTTTTGCTTAGTTCAGAGAGAGCTGATTACTGAGT
ATGTGATTTAGGCTAGGAGACATGTAACATTGGAATTTAATAAAACCAACTGTATGTATTCTCT
TGAAAATGTAAGTGATCTTTATCCATGCACAAATATCTGTTTCCTACATGTGATATATAAATTC
TGTATTCTTATTTGAGATGTCTTTTTTAAAATGATTGGACAATATTAAACAACAGCTGATCTGA
TATCGCACAACAGCATTA

hide sequence

RefSeq Acc Id:

XM_008773344 ⟹ XP_008771566

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	80,537,723 - 80,618,940 (-)	NCBI
mRatBN7.2	X	76,354,824 - 76,434,479 (-)	NCBI
Rnor_6.0	X	82,641,679 - 82,743,771 (-)	NCBI

Sequence:

show sequence

ATAAATCCACTTTGAATCATGCTGAATTTTAGAAGGACACGACACACACCATCTGGCCACAGGT
CCAACTCTAGCTTGAACCTGTTCTGTTGCTTTCCGTTTTTTGGATGTCGTCGACAATCCAGGAG
TCGGCAGCGGGCGGGGACCCCTGTGGTCCCTCTTTTGAGGTACCCGCCTTTGGCGAGGTCAGCA
GTCACCCAGCGCGAGTCCTGGTCCTACGAAGAAGACCACGAGCCAGCTCAGCAGGCGGGATGCA
TGCTGGTGCTGGGGACAAGCAGCTTCTTTTCGAGTGTTCCTGAAGCGGCGATGCTACCATTCGC
TCCTGTGGAGGATCCCTGGGACGAAGAAATGGAGGTGTTCGGCAGTGGCAGCACGAGCAGTAGC
GAGCCACAGATTGTGTTTACCATGAAGACTGCGGCGATGGTTATTCGACAGCATGAACACAAAG
AGGTAAATGATCTTAAAATGGTTGATGAACCAATGGATGAGGGAGAGCCAGTTTTTTGCCGGCG
GGAAGATTTGGTTAAAGAAATCCCTATTACACAGCATGTTAAAGAAGGATATGAGAAAGCAGAT
CCCGCACAGTTCGACTTGCTCAAGGTTCTTGGTCAGGGATCTTTTGGAAAGGTTTTTCTTGTTA
GAAAGAAGACTGGTCCTGATGCTGGGCAGCTCTATGCAATGAAGGTGTTAAGAAAAGCTTCTTT
GAAGGTTCGAGACCGTGTTCGCACAAAGATGGAGAGGGATATACTGGTAGAAGTAAATCATCCT
TTTATCGTCAAACTGCACTATGCTTTTCAGACTGAAGGGAAGCTGTACTTAATATTGGATTTCC
TCAGGGGAGGAGATGTCTTCACAAGATTATCCAAAGAGGTTCTTTTTACAGAGGAAGATGTGAA
ATTCTACCTTGCGGAATTGGCCCTAGCTTTGGATCATCTGCATCGATTAGGAATTGTGTATAGA
GACCTGAAGCCAGAGAACATCTTGCTTGACGAAATAGGACATATCAAGTTAACAGATTTTGGGC
TGAGCAAAGAGTCAGTGGATCAAGAAAAGAAAGCCTACTCCTTCTGTGGTACTGTAGAATACAT
GGCCCCCGAAGTAGTAAATCGAAGAGGCCATTCTCAGAGTGCTGATTGGTGGTCATATGGTGTA
CTTATGTTTGAAATGCTTACTGGCACATTGCCATTTCAAGGGAAAGACAGAAATGAGACCATGA
ATATGATACTGAAAGCAAAACTTGGAATGCCCCAATTCCTTAGTGCTGAAGCACAAAGCCTTTT
AAGGATGTTATTCAAAAGGAATCCAGCAAATAGATTGGGATCAGAAGGAGTTGAAGAAGTCAAA
AGACATGCTTTTTTCTCTTCCATTGACTGGAATAAATTATATAAAAGAGAAGTTCAGCCTCCTT
TCAGACCTGCTTCTGGAAAACCAGATGATACTTTTTGTTTTGATCCTGAATTTACTGCCAAAAC
ACCTAAAGATTCTCCTGGTTTGCCAGCCAGCGCAAATGCTCATCAACTCTTCAAAGGATTCAGT
TTTGTTGCGACTTCTATCGCAGAAGAATATAAAATCACTCCTGTTACAAGTTCAAATGTATTGC
CAATCGTTCAGATAAATGGAAATGCTGCTCAATTTAGTGAAGCGTATGAGTTGAAAGAGGATAT
TGGTATTGGATCTTACTCTGTTTGCAAGCGATGCATACATTCAGCTTCCAACATGGAATTTGCA
GTTAAGATCATTGATAAAAATAAGAGAGACCCCTCAGAAGAAATTGAAATTCTGATGCGCTATG
GACAACATCCCAACATTATCTCTTTAAAGGAGGTCTTTGATGATGGGAAATATGTTTACCTTGT
TACGGACTTGATGAAAGGAGGAGAACTTCTGGATCGCATTCTCAAAAAGAAATGTTTCTCAGAG
CAGGAAGCTAGTAATGTGCTGTATGTAATTACCAAGACAGTTGAATACCTTCATTCTCAAGGAG
TCGTTCATCGTGATCTTAAGCCCAGTAATATTTTGTACATGGATGAATCAGGCCATCCAGATTC
AATCAAGATCTGTGACTTTGGATTTGCAAAACAGCTTCGAGGAGAAAATGGACTTCTGTTAACT
CCATGCTACACTGCAAACTTTGTAGCCCCTGAGGGATATGATGCTGCCTGTGATATTTGGAGCT
TAGGAGTCCTTTTGTACACAATGTTGGCTGGCTACACTCCATTTTCAAATGGACCCAATGATAC
TCCTGAGGAAATACTTCTGCGCATAGGCAATGGGAGGTTCTCTTTGAGTGGTGGAATCTGGGAT
AATATTTCACGTGGAGCAAAGGATTTGCTTTCTCATATGCTTCACATGGACCCACATCAGCGTT
ATACTGCTGAACAAGTATTAAAGCACCCTTGGATAACCCAAAGAGAACAACTGCCGCGTCATCA
GCCAACCTCAGATGACCCGCCACAGGTTGTTATGGAAGCAGTGGCTGCAGCATATTCTGTTTTG
GCTCGGAACCAGAACAGGCATCCAATCCTGGAGCCTGTTGCTGCTTCACGTTTAGCTCAGAGAC
GTAACATGAAAAAGCGAACATCAACTGGCTTATGAGTTCTAGTGTTCCTCAGCTAACTGGATGA
AGAGAAAATTAAATGTGTTGTGGGTTGGCTTTTTTGTTGTTGTTGTTGTTTTGTTTTGTTTTTG
TCTAATCTCATATCAAAGGTATTTTGTTTCCTGCCATATTACTTGAATATTCTGTTAAGCCTCT
TTTGGAGAGGTTGGAATTTTAAACAAACATGCATAGGTCCGTAATATTCATACTATGTCATATT
GCAGTAGTGTCCAAATGTTTGACTATGTAATTGATGTCTACAAGGTCTTGTCTTCTCTGCACAT
TAACTTCCCAAATTCCTTTCAAAGTTAACCTATATTTATTATTTTACATAAATATGGGTTAGGA
ATTCATTAACACTAATCAAAATGCTTTTCATATGTTATAATGCTAAATAATATCAGTGTTTTAC
CATCATTTCCTAAAAAGTAACTTTTCTTCTTAAAAGAACAACAGAAGTATTCTAATAGCTTGTG
CATAGCCAAAGCACTCGTCTGAGTCCATTTAGATACTAAATGTAGTAAAATAGTTTGGTGCCTG
AGCAAAATACATTCGTGCTAATATATGAATTCCTGATATGGTTGGTGCCAAAGTTTTGATAGAA
TAATTAAATCACTAATAATTTGTGCGGACAGATTTGTATATTATCCATAAGTGGCTTCATCTAG
AGAAAGTTTCCATGAGGCTTCTAATGTTTTACAGCTAATGAAGTTGTAGTGAAAGTGAAGATGT
TTTTATCCAAAGGTTTCATGTTGGTGTTGTAATCTCCTAAAAATGTCATAGTTAAGCCTTTGAA
TATGCACTTCATGGTGTTGATGCGATCTTGGTGTTACCTAAGCTGACTTTGAAGTTAACCATTG
AATGAATCATCTTTCCCCTGTATACGTGAAGCTACACTGTGTTATTCCTGATTTCCATGTGGTT
TGAGCTACAGTGTAGCAGCATATTGATCTACCTTGAATCCTATGGTGATGTAGTTGAAGTTTTA
CTATAGTGGACTTGTGCACTTAGCACATATGATACCGTATAATGTATTTCAGTAAGCATCAGAC
AATTCTACATACTTCAAGAAAATAATTTCTCATTTTAAATAGGAAACAATATTGATGATTGACA
CAGAAATTTGAGTACATTTAAAAAACATTTATAATAAACTGGCCAAATTGGCATTATTAAATTT
ATGATTCAGAACCAGTGTGTAATGTGTATTGTTTTCATCAAATGCTGAAAATTTAAAAAGTCAT
TTTATATTGTTAAGGAAAATACCATTAACTACTACTACTGACAGAAAAAATTCATGAATGTAAA
CTGGAGAGTATCAGCTTTGTTTAGTGACTAGAAATGTATCACTTGTGTGTGCTAGGTGTACTGT
TTGCTGTGCATTTTTTTTTGCTTAGTTCAGAGAGAGCTGATTACTGAGTATGTGATTTAGGCTA
GGAGACATGTAACATTGGAATTTAATAAAACCAACTGTATGTATTCTCTTGAAAATGTAAGTGA
TCTTTATCCATGCACAAATATCTGTTTCCTACATGTGATATATAAATTCTGTATTCTTATTTGA
GATGTCTTTTTTAAAATGATTGGACAATATTAAACAACAGCTGATCTGATATCGCACAACAGCA
TTA

hide sequence

RefSeq Acc Id:

XM_039099725 ⟹ XP_038955653

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	80,537,723 - 80,619,208 (-)	NCBI
mRatBN7.2	X	76,354,824 - 76,434,786 (-)	NCBI

RefSeq Acc Id:

XM_039099731 ⟹ XP_038955659

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	80,537,723 - 80,618,940 (-)	NCBI
mRatBN7.2	X	76,354,945 - 76,434,545 (-)	NCBI

RefSeq Acc Id:

XM_063280014 ⟹ XP_063136084

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	80,537,723 - 80,619,194 (-)	NCBI

RefSeq Acc Id:

XM_063280015 ⟹ XP_063136085

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	80,537,723 - 80,619,195 (-)	NCBI

RefSeq Acc Id:

XM_063280016 ⟹ XP_063136086

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	80,537,723 - 80,618,939 (-)	NCBI

RefSeq Acc Id:

XM_063280017 ⟹ XP_063136087

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	80,537,723 - 80,619,194 (-)	NCBI

RefSeq Acc Id:

XM_063280018 ⟹ XP_063136088

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	80,537,723 - 80,619,244 (-)	NCBI

RefSeq Acc Id:

XM_063280019 ⟹ XP_063136089

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	80,537,723 - 80,619,195 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001178650	(Get FASTA)	NCBI Sequence Viewer
	XP_008771565	(Get FASTA)	NCBI Sequence Viewer
	XP_008771566	(Get FASTA)	NCBI Sequence Viewer
	XP_038955653	(Get FASTA)	NCBI Sequence Viewer
	XP_038955659	(Get FASTA)	NCBI Sequence Viewer
	XP_063136084	(Get FASTA)	NCBI Sequence Viewer
	XP_063136085	(Get FASTA)	NCBI Sequence Viewer
	XP_063136086	(Get FASTA)	NCBI Sequence Viewer
	XP_063136087	(Get FASTA)	NCBI Sequence Viewer
	XP_063136088	(Get FASTA)	NCBI Sequence Viewer
	XP_063136089	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM07093	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000003512.7
	ENSRNOP00000070197
	ENSRNOP00000070197.2
	ENSRNOP00000079575.1
	ENSRNOP00000096344.1
	ENSRNOP00000101596
	ENSRNOP00000102256
	ENSRNOP00000103416

RefSeq Acc Id:

NP_001178650 ⟸ NM_001191721

- UniProtKB:

A0A8I6AQN6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLNFRRTRHTPSGHRSNSSLNLFCCFPFFGCRRQSRSRQRAGTPVVPLLRYPPLARSAVTQRES
WSYEEDHEPAQQAGCMLVLGTSSFFSSVPEAAMLPFAPVEDPWDEEMEVFGSGSTSSSEPQIVF
TMKTAAMVIRQHEHKEVNDLKMVDEPMDEGEPVFCRREDLVKEIPITQHVKEGYEKADPAQFDL
LKVLGQGSFGKVFLVRKKTGPDAGQLYAMKVLRKASLKVRDRVRTKMERDILVEVNHPFIVKLH
YAFQTEGKLYLILDFLRGGDVFTRLSKEVLFTEEDVKFYLAELALALDHLHRLGIVYRDLKPEN
ILLDEIGHIKLTDFGLSKESVDQEKKAYSFCGTVEYMAPEVVNRRGHSQSADWWSYGVLMFEML
TGTLPFQGKDRNETMNMILKAKLGMPQFLSAEAQSLLRMLFKRNPANRLGSEGVEEVKRHAFFS
SIDWNKLYKREVQPPFRPASGKPDDTFCFDPEFTAKTPKDSPGLPASANAHQLFKGFSFVATSI
AEEYKITPVTSSNVLPIVQINGNAAQFSEAYELKEDIGIGSYSVCKRCIHSASNMEFAVKIIDK
NKRDPSEEIEILMRYGQHPNIISLKEVFDDGKYVYLVTDLMKGGELLDRILKKKCFSEQEASNV
LYVITKTVEYLHSQGVVHRDLKPSNILYMDESGHPDSIKICDFGFAKQLRGENGLLLTPCYTAN
FVAPEVLTQQGYDAACDIWSLGVLLYTMLAGYTPFSNGPNDTPEEILLRIGNGRFSLSGGIWDN
ISRGAKDLLSHMLHMDPHQRYTAEQVLKHPWITQREQLPRHQPTSDDPPQEAVAAAYSVLARNQ
NRHPILEPVAASRLAQRRNMKKRTSTGL

hide sequence

RefSeq Acc Id:	XP_008771566 ⟸ XM_008773344
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2JXA6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLNFRRTRHTPSGHRSNSSLNLFCCFPFFGCRRQSRSRQRAGTPVVPLLRYPPLARSAVTQRES WSYEEDHEPAQQAGCMLVLGTSSFFSSVPEAAMLPFAPVEDPWDEEMEVFGSGSTSSSEPQIVF TMKTAAMVIRQHEHKEVNDLKMVDEPMDEGEPVFCRREDLVKEIPITQHVKEGYEKADPAQFDL LKVLGQGSFGKVFLVRKKTGPDAGQLYAMKVLRKASLKVRDRVRTKMERDILVEVNHPFIVKLH YAFQTEGKLYLILDFLRGGDVFTRLSKEVLFTEEDVKFYLAELALALDHLHRLGIVYRDLKPEN ILLDEIGHIKLTDFGLSKESVDQEKKAYSFCGTVEYMAPEVVNRRGHSQSADWWSYGVLMFEML TGTLPFQGKDRNETMNMILKAKLGMPQFLSAEAQSLLRMLFKRNPANRLGSEGVEEVKRHAFFS SIDWNKLYKREVQPPFRPASGKPDDTFCFDPEFTAKTPKDSPGLPASANAHQLFKGFSFVATSI AEEYKITPVTSSNVLPIVQINGNAAQFSEAYELKEDIGIGSYSVCKRCIHSASNMEFAVKIIDK NKRDPSEEIEILMRYGQHPNIISLKEVFDDGKYVYLVTDLMKGGELLDRILKKKCFSEQEASNV LYVITKTVEYLHSQGVVHRDLKPSNILYMDESGHPDSIKICDFGFAKQLRGENGLLLTPCYTAN FVAPEGYDAACDIWSLGVLLYTMLAGYTPFSNGPNDTPEEILLRIGNGRFSLSGGIWDNISRGA KDLLSHMLHMDPHQRYTAEQVLKHPWITQREQLPRHQPTSDDPPQVVMEAVAAAYSVLARNQNR HPILEPVAASRLAQRRNMKKRTSTGL hide sequence

RefSeq Acc Id:	XP_008771565 ⟸ XM_008773343
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6G3H3 (UniProtKB/TrEMBL), A0A0G2JXA6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLNFRRTRHTPSGHRSNSSLNLFCCFPFFGCRRQSRSRQRAGTPVVPLLRYPPLARSAVTQRES WSYEEDHEPAQQAGCMLVLGTSSFFSSVPEAAMLPFAPVEDPWDEEMEVFGSGSTSSSEPQIVF TMKTAAMVIRQHEHKEVNDLKMVDEPMDEGEPVFCRREDLVKEIPITQHVKEGYEKADPAQFDL LKVLGQGSFGKVFLVRKKTGPDAGQLYAMKVLRKASLKVRDRVRTKMERDILVEVNHPFIVKLH YAFQTEGKLYLILDFLRGGDVFTRLSKEVLFTEEDVKFYLAELALALDHLHRLGIVYRDLKPEN ILLDEIGHIKLTDFGLSKESVDQEKKAYSFCGTVEYMAPEVVNRRGHSQSADWWSYGVLMFEML TGTLPFQGKDRNETMNMILKAKLGMPQFLSAEAQSLLRMLFKRNPANRLGSEGVEEVKRHAFFS SIDWNKLYKREVQPPFRPASGKPDDTFCFDPEFTAKTPKDSPGLPASANAHQLFKGFSFVATSI AEEYKITPVTSSNVLPIVQINGNAAQFSEAYELKEDIGIGSYSVCKRCIHSASNMEFAVKIIDK NKRDPSEEIEILMRYGQHPNIISLKEVFDDGKYVYLVTDLMKGGELLDRILKKKCFSEQEASNV LYVITKTVEYLHSQGVVHRDLKPSNILYMDESGHPDSIKICDFGFAKQLRGENGLLLTPCYTAN FVAPEVLTQQGYDAACDIWSLGVLLYTMLAGYTPFSNGPNDTPEEILLRIGNGRFSLSGGIWDN ISRGAKDLLSHMLHMDPHQRYTAEQVLKHPWITQREQLPRHQPTSDDPPQVVMEAVAAAYSVLA RNQNRHPILEPVAASRLAQRRNMKKRTSTGL hide sequence

Ensembl Acc Id:

ENSRNOP00000070197 ⟸ ENSRNOT00000081625

Ensembl Acc Id:

ENSRNOP00000003512 ⟸ ENSRNOT00000003512

RefSeq Acc Id:	XP_038955653 ⟸ XM_039099725
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6G3H3 (UniProtKB/TrEMBL), A0A0G2JXA6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038955659 ⟸ XM_039099731
- Peptide Label:	isoform X4
- UniProtKB:	A0A0G2JXA6 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000096344 ⟸ ENSRNOT00000097548

Ensembl Acc Id:

ENSRNOP00000079575 ⟸ ENSRNOT00000115013

RefSeq Acc Id:	XP_063136088 ⟸ XM_063280018
- Peptide Label:	isoform X4
- UniProtKB:	A0A0G2JXA6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136085 ⟸ XM_063280015
- Peptide Label:	isoform X3
- UniProtKB:	A0A0G2JXA6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136089 ⟸ XM_063280019
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2JXA6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136087 ⟸ XM_063280017
- Peptide Label:	isoform X4
- UniProtKB:	A0A0G2JXA6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136084 ⟸ XM_063280014
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6G3H3 (UniProtKB/TrEMBL), A0A0G2JXA6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136086 ⟸ XM_063280016
- Peptide Label:	isoform X3
- UniProtKB:	A0A0G2JXA6 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000101596 ⟸ ENSRNOT00000144181

Ensembl Acc Id:

ENSRNOP00000102256 ⟸ ENSRNOT00000147711

Ensembl Acc Id:

ENSRNOP00000103416 ⟸ ENSRNOT00000158353

Protein Domains

AGC-kinase C-terminal Protein kinase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1LYL8-F1-model_v2	AlphaFold	F1LYL8	1-860	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1560817	AgrOrtholog
BioCyc Gene	G2FUF-1842	BioCyc
Ensembl Genes	ENSRNOG00000002592	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000003512.7	UniProtKB/TrEMBL
	ENSRNOT00000081625	ENTREZGENE
	ENSRNOT00000081625.2	UniProtKB/TrEMBL
	ENSRNOT00000097548.1	UniProtKB/TrEMBL
	ENSRNOT00000115013.1	UniProtKB/TrEMBL
	ENSRNOT00000144181	ENTREZGENE
	ENSRNOT00000147711	ENTREZGENE
	ENSRNOT00000158353	ENTREZGENE
Gene3D-CATH	Phosphorylase Kinase, domain 1	UniProtKB/TrEMBL
	Transferase(Phosphotransferase) domain 1	UniProtKB/TrEMBL
InterPro	AGC-kinase_C	UniProtKB/TrEMBL
	Kinase-like_dom	UniProtKB/TrEMBL
	Pkinase_C	UniProtKB/TrEMBL
	Prot_kinase_cat_dom	UniProtKB/TrEMBL
	Protein_kinase_ATP_BS	UniProtKB/TrEMBL
	Ribosomal_S6_kinase_II	UniProtKB/TrEMBL
	RSK_N	UniProtKB/TrEMBL
	Ser/Thr_kinase_AS	UniProtKB/TrEMBL
NCBI Gene	317203	ENTREZGENE
PANTHER	RIBOSOMAL PROTEIN S6 KINASE	UniProtKB/TrEMBL
Pfam	Pkinase	UniProtKB/TrEMBL
	Pkinase_C	UniProtKB/TrEMBL
PhenoGen	Rps6ka6	PhenoGen
PIRSF	Ribsml_S6_kin_2	UniProtKB/TrEMBL
PROSITE	AGC_KINASE_CTER	UniProtKB/TrEMBL
	PROTEIN_KINASE_ATP	UniProtKB/TrEMBL
	PROTEIN_KINASE_DOM	UniProtKB/TrEMBL
	PROTEIN_KINASE_ST	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000002592	RatGTEx
SMART	S_TK_X	UniProtKB/TrEMBL
	S_TKc	UniProtKB/TrEMBL
Superfamily-SCOP	Kinase_like	UniProtKB/TrEMBL
UniProt	A0A0G2JXA6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AQN6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6G3H3	ENTREZGENE, UniProtKB/TrEMBL
	F1LYL8_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-05-18	Rps6ka6	ribosomal protein S6 kinase A6	Rps6ka6	ribosomal protein S6 kinase polypeptide 6	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Rps6ka6	ribosomal protein S6 kinase polypeptide 6	Rps6ka6_predicted	ribosomal protein S6 kinase polypeptide 6 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Rps6ka6_predicted	ribosomal protein S6 kinase polypeptide 6 (predicted)	RGD1560817_predicted	similar to ribosomal protein S6 kinase polypeptide 6 (predicted)	Symbol and Name updated	1299863	APPROVED
2006-03-07	RGD1560817_predicted	similar to ribosomal protein S6 kinase polypeptide 6 (predicted)	LOC317203	similar to ribosomal protein S6 kinase polypeptide 6	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC317203	similar to ribosomal protein S6 kinase polypeptide 6			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

RGD Manual Annotations

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

RGD Manual Annotations

Imported Annotations - KEGG (archival)