Gmppa (GDP-mannose pyrophosphorylase A)

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Gene: Gmppa (GDP-mannose pyrophosphorylase A) Rattus norvegicus

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Symbol:

Gmppa

Name:

GDP-mannose pyrophosphorylase A

RGD ID:

1560644

Description:

Predicted to enable enzyme binding activity and enzyme inhibitor activity. Predicted to be involved in several processes, including negative regulation of nucleobase-containing compound metabolic process; negative regulation of phosphorus metabolic process; and negative regulation of small molecule metabolic process. Predicted to act upstream of or within several processes, including GDP-mannose biosynthetic process; motor behavior; and protein glycosylation. Predicted to be part of GDP-mannose pyrophosphorylase complex. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in alacrima, achalasia, and impaired intellectual development syndrome. Orthologous to human GMPPA (GDP-mannose pyrophosphorylase A); PARTICIPATES IN amino sugar metabolic pathway; fructose and mannose metabolic pathway; nucleotide sugar metabolic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

GTP-mannose-1-phosphate guanylyltransferase alpha; mannose-1-phosphate guanyltransferase alpha

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	GMPPA (GDP-mannose pyrophosphorylase A)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Gmppa (GDP-mannose pyrophosphorylase A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Gmppa (GDP-mannose pyrophosphorylase A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	GMPPA (GDP-mannose pyrophosphorylase A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	GMPPA (GDP-mannose pyrophosphorylase A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Gmppa (GDP-mannose pyrophosphorylase A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	GMPPA (GDP-mannose pyrophosphorylase A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	GMPPA (GDP-mannose pyrophosphorylase A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Gmppa (GDP-mannose pyrophosphorylase A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	HDGFL3 (HDGF like 3)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Gmppa (GDP-mannose pyrophosphorylase A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	GMPPA (GDP-mannose pyrophosphorylase A)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	gmppaa (GDP-mannose pyrophosphorylase Aa)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	gmppab (GDP-mannose pyrophosphorylase Ab)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	Y47D9A.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG8207	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	gmppa	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	84,375,373 - 84,382,917 (+)	NCBI		GRCr8
mRatBN7.2	9	76,926,724 - 76,934,274 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	76,926,739 - 76,934,269 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	85,371,310 - 85,378,586 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	90,500,190 - 90,507,467 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	88,886,366 - 88,893,642 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	82,632,267 - 82,639,811 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	82,632,230 - 82,639,821 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	82,401,531 - 82,409,072 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	74,713,604 - 74,721,031 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	9	74,496,780 - 74,504,202 (+)	NCBI		Celera
Cytogenetic Map	9	q33	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

alacrima, achalasia, and impaired intellectual development syndrome (ISO,ISS)

cerebrotendinous xanthomatosis (ISO)

Developmental Disabilities (ISO)

gastroesophageal reflux disease (ISO)

genetic disease (ISO)

Neurodevelopmental Disorders (ISO)

paroxysmal nonkinesigenic dyskinesia 1 (ISO)

polydactyly (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,6-dinitrotoluene (EXP)

2-methylcholine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP,ISO)

elemental selenium (ISO)

entinostat (ISO)

epoxiconazole (ISO)

fenthion (ISO)

folic acid (ISO)

glafenine (EXP)

ivermectin (ISO)

methidathion (ISO)

methimazole (EXP)

mifepristone (ISO)

nimesulide (EXP)

paracetamol (ISO)

PCB138 (ISO)

phenobarbital (EXP,ISO)

pirinixic acid (ISO)

propiconazole (ISO)

rotenone (EXP)

selenium atom (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

testosterone (ISO)

tetrachloroethene (ISO)

thapsigargin (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

tunicamycin (ISO)

valproic acid (ISO)

vitamin E (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biosynthetic process (IEA)

cognition (IEA,ISO)

GDP-mannose biosynthetic process (IEA,ISO)

GDP-mannose metabolic process (ISO)

glycoprotein metabolic process (ISO)

motor behavior (IEA,ISO)

muscle organ morphogenesis (IEA,ISO)

negative regulation of biosynthetic process (IEA,ISO)

negative regulation of nucleobase-containing compound metabolic process (IEA,ISO)

negative regulation of phosphate metabolic process (IEA,ISO)

negative regulation of phosphorus metabolic process (ISO)

negative regulation of small molecule metabolic process (IEA,ISO)

neuromuscular process (IEA,ISO)

neuron apoptotic process (IEA,ISO)

protein glycosylation (IEA,ISO)

skeletal muscle organ development (IEA,ISO)

telencephalon development (IEA,ISO)

Cellular Component

cytoplasm (IBA)

GDP-mannose pyrophosphorylase complex (IEA,ISO,ISS)

Molecular Function

enzyme binding (IEA,ISO)

enzyme inhibitor activity (IEA,ISO)

mannose-1-phosphate guanylyltransferase (GTP) activity (ISO)

protein binding (ISO)

transferase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

amino sugar metabolic pathway (IEA)

fructose and mannose metabolic pathway (IEA)

nucleotide sugar metabolic pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
3.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:5946626	PMID:22871113	PMID:23376485	PMID:23533145

Genomics

Comparative Map Data

Gmppa
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	84,375,373 - 84,382,917 (+)	NCBI		GRCr8
mRatBN7.2	9	76,926,724 - 76,934,274 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	76,926,739 - 76,934,269 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	85,371,310 - 85,378,586 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	90,500,190 - 90,507,467 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	88,886,366 - 88,893,642 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	82,632,267 - 82,639,811 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	82,632,230 - 82,639,821 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	82,401,531 - 82,409,072 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	74,713,604 - 74,721,031 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	9	74,496,780 - 74,504,202 (+)	NCBI		Celera
Cytogenetic Map	9	q33	NCBI

GMPPA
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	219,498,891 - 219,506,989 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	219,498,865 - 219,513,898 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	220,363,613 - 220,371,711 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	220,071,857 - 220,079,955 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	2	214,133,579 - 214,141,710 (+)	NCBI		Celera
Cytogenetic Map	2	q35	NCBI
HuRef	2	212,216,657 - 212,224,788 (+)	NCBI		HuRef
CHM1_1	2	220,369,431 - 220,377,562 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	219,983,636 - 219,991,734 (+)	NCBI		T2T-CHM13v2.0

Gmppa
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	75,412,555 - 75,419,823 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	75,412,574 - 75,419,823 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	75,435,911 - 75,443,179 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	75,435,930 - 75,443,179 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	75,432,518 - 75,439,751 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	75,319,132 - 75,326,321 (+)	NCBI		MGSCv36	mm8
Celera	1	75,926,888 - 75,934,237 (+)	NCBI		Celera
Cytogenetic Map	1	C4	NCBI
cM Map	1	39.04	NCBI

Gmppa
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955453	13,965,174 - 13,974,789 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955453	13,967,118 - 13,974,351 (-)	NCBI	ChiLan1.0	ChiLan1.0

GMPPA
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	122,128,991 - 122,137,162 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	122,143,986 - 122,152,130 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	106,756,115 - 106,764,280 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	225,345,983 - 225,354,116 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	225,346,029 - 225,354,116 (+)	Ensembl	panpan1.1		panPan2

GMPPA
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	37	26,010,531 - 26,017,798 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	37	26,010,638 - 26,017,787 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	37	26,836,061 - 26,843,269 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	37	26,025,650 - 26,032,850 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	37	26,025,704 - 26,033,700 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	37	25,929,609 - 25,936,812 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	37	25,865,687 - 25,872,896 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	37	25,886,247 - 25,893,449 (+)	NCBI		UU_Cfam_GSD_1.0

Gmppa
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	175,539,181 - 175,546,398 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936569	1,881,774 - 1,889,932 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936569	1,881,975 - 1,889,179 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GMPPA
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	121,507,564 - 121,515,300 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	121,507,560 - 121,515,299 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	134,627,448 - 134,635,194 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GMPPA
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	105,393,869 - 105,401,997 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	105,393,891 - 105,402,008 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	93,998,985 - 94,007,127 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Gmppa
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624823	5,550,014 - 5,559,812 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624823	5,552,044 - 5,559,037 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Gmppa
46 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	53
Count of miRNA genes:	52
Interacting mature miRNAs:	53
Transcripts:	ENSRNOT00000027064
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
7411571	Bw138	Body weight QTL 138	14.3	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	9	32535505	77535505	Rat
11353957	Bmd92	Bone mineral density QTL 92		0.01	tibia mineral mass (VT:1000283)	volumetric bone mineral density (CMO:0001553)	9	46114199	91114199	Rat
61385	Edpm9	Estrogen-dependent pituitary mass QTL 9	3.43	0.05	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	9	63869687	108869687	Rat
70218	Cm28	Cardiac mass QTL 28	8.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	25268044	79271759	Rat
724544	Uae9	Urinary albumin excretion QTL 9	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	9	25268044	114175309	Rat
1578760	Cm53	Cardiac mass QTL 53	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	56771635	101771635	Rat
1581580	Uae34	Urinary albumin excretion QTL 34			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	62072275	96470995	Rat
12879506	Pur33	Proteinuria QTL 33			urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	44649921	89649921	Rat
1354626	Bvd1	Brain ventricular dilatation QTL 1	3.73	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	9	75712843	111552878	Rat
731164	Uae25	Urinary albumin excretion QTL 25	3.5	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	25661188	100929786	Rat
10058949	Gmadr5	Adrenal mass QTL 5	2	0.014	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	9	42791513	87976209	Rat
1578757	Pur6	Proteinuria QTL 6	3.3	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	62072275	96470995	Rat
631656	Bp108	Blood pressure QTL 108	5.97	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	48598251	93598251	Rat
2303170	Bp332	Blood pressure QTL 332	3.73	0.027	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	55847841	77026453	Rat
8662828	Vetf6	Vascular elastic tissue fragility QTL 6	3.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	9	36962359	92058970	Rat
61352	Bp34	Blood pressure QTL 34	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	42495343	79271511	Rat
724515	Uae16	Urinary albumin excretion QTL 16	8		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	58163035	100929646	Rat
731171	Glom6	Glomerulus QTL 6	2.8	0.0003	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	9	64573531	109573531	Rat
1598834	Memor11	Memory QTL 11	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	9	36962359	77814038	Rat
70186	Niddm26	Non-insulin dependent diabetes mellitus QTL 26	3.87		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	9	22071169	86369743	Rat
7207814	Bmd91	Bone mineral density QTL 91	3.5		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	9	23754144	83851531	Rat
6903941	Pur31	Proteinuria QTL 31		0.036	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	9	40194188	85194188	Rat
2303180	Bp333	Blood pressure QTL 333		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	56627713	78595166	Rat
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	36962359	95410867	Rat
11353949	Bp393	Blood pressure QTL 393			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	40194188	85194188	Rat
11353951	Bp394	Blood pressure QTL 394			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	44649921	89649921	Rat
10054125	Srcrt7	Stress Responsive Cort QTL 7	3.33	0.0011	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	9	1	87073594	Rat
1300134	Bp185	Blood pressure QTL 185	3.73		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	61381434	104821652	Rat
7411656	Foco26	Food consumption QTL 26	9.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	32535505	77535505	Rat

Markers in Region

D9Mco51

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	76,929,328 - 76,929,514 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	82,634,869 - 82,635,054	NCBI	Rnor6.0
Rnor_5.0	9	82,404,130 - 82,404,315	UniSTS	Rnor5.0
RGSC_v3.4	9	74,716,089 - 74,716,274	UniSTS	RGSC3.4
Celera	9	74,499,259 - 74,499,444	UniSTS
Cytogenetic Map	9	q33	UniSTS

D9Mco52

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	76,933,733 - 76,933,905 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	82,639,275 - 82,639,446	NCBI	Rnor6.0
Rnor_5.0	9	82,408,536 - 82,408,707	UniSTS	Rnor5.0
RGSC_v3.4	9	74,720,495 - 74,720,666	UniSTS	RGSC3.4
Celera	9	74,503,666 - 74,503,837	UniSTS
Cytogenetic Map	9	q33	UniSTS

RH128732

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	76,934,031 - 76,934,214 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	82,639,573 - 82,639,755	NCBI	Rnor6.0
Rnor_5.0	9	82,408,834 - 82,409,016	UniSTS	Rnor5.0
RGSC_v3.4	9	74,720,793 - 74,720,975	UniSTS	RGSC3.4
Celera	9	74,503,964 - 74,504,146	UniSTS
RH 3.4 Map	9	713.29	UniSTS
Cytogenetic Map	9	q33	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001025056	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432721	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432722	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432723	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432724	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245271	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767291	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267627	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267628	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267630	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267631	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267632	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010054629	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC112361	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC083763	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000027064 ⟹ ENSRNOP00000027064

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	76,926,844 - 76,934,269 (+)	Ensembl
Rnor_6.0 Ensembl	9	82,632,384 - 82,639,810 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000085165 ⟹ ENSRNOP00000074442

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	76,926,739 - 76,934,210 (+)	Ensembl
Rnor_6.0 Ensembl	9	82,632,230 - 82,639,821 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109761 ⟹ ENSRNOP00000078288

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	76,926,844 - 76,934,269 (+)	Ensembl

RefSeq Acc Id:

NM_001025056 ⟹ NP_001020227

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,375,490 - 84,382,917 (+)	NCBI
mRatBN7.2	9	76,926,844 - 76,934,270 (+)	NCBI
Rnor_6.0	9	82,632,384 - 82,639,811 (+)	NCBI
Rnor_5.0	9	82,401,531 - 82,409,072 (+)	NCBI
RGSC_v3.4	9	74,713,604 - 74,721,031 (+)	RGD
Celera	9	74,496,780 - 74,504,202 (+)	RGD

Sequence:

show sequence

GGGGTGGTGGGCAGGGTAGGGGTAAGGGACGAACCCTCGACGTAGGGAGGGTTCGCAAGGCCTG
CCTTGCTCTCCTCATGCCCACGCTTGTGTTGGTGGCTACGAGAAGCTGACATCTATTGGACAGA
CTCAATTGTGGGGTCCAGAAGGTCAGCAATCAATCTTTAGAATCCAGAGATTCCACACCGGTGG
TTTAGGTCACAACGACCATCATGCTCAAAGCTGTGATCCTCATTGGAGGACCCCAGAAGGGGAC
TCGCTTCAGGCCTTTGTCTTTTGAAGTGCCCAAACCGTTGTTCCCTGTGGCAGGTGTCCCTATG
ATCCAGCACCATATAGAAGCCTGTGCCCAGGTCCCTGGGATGCAGGAGATTCTACTCATTGGCT
TCTACCAGCCTGATGAGGCTCTCACCCAGTTCCTGGAAGCTGCACAGCAGGAGTTTAACCTTCC
AGTCAGGTATCTGCAGGAGTTCACTCCCCTTGGCACAGGGGGTGGCCTCTACCATTTTCGGGAC
CAGATCCTGGCTGGCGCACCTGAGGCCTTCTTCGTGCTCAATGCTGATGTCTGTTCTGACTTCC
CTCTGAGTGCCATGTTGGATGCTCACAGGCTCCAACGCCACCCTTTCCTACTCCTTGGCACCAC
GGCGAACAGGACACAATCTCTCAACTACGGCTGCATCGTTGAGAATCCACAGACGCATGAGGTC
CTGCACTATGTGGAGAAACCCAGCACCTTTATCAGCGACATCATCAACTGTGGCATCTACCTTT
TCTCCCCAGAAGCCCTGAAGCCTCTCCGGGATGTTTTCCAGCGTAATCAGCAGGATGGGCAACT
GGAGGAATCTCCAGGCTCCTGGCCTGGTGCAGGGACCATCCGACTAGAGCAGGATGTGTTCTCA
GCCCTGGCTGGGCAGGGCCAAATCTATGTGCACCTCACCGACGGCATCTGGAGCCAGATCAAGT
CGGCAGGCTCGGCCCTTTATGCTTCCCGCCTGTATCTGGGGCGATACCAGATCACCCACCCAGA
ACGGCTAGCCAGACACACTGCAGGGGGCCCACGAATCAGAGGAAATGTTTACATCCATCCAACT
GCTAAAGTGGCCCCATCAGCTGTGCTGGGCCCCAATGTCTCCATTGGGAAGGGGGTGACCATAG
GCGAGGGTGTGCGTCTGCGGGAGAGTATTGTCCTCCATGGAGCCACACTGCAGGAACACACCTG
TGTCCTTCACAGCATTGTGGGCTGGGGGAGCACTGTGGGGCGCTGGGCCCGCGTAGAGGGGACT
CCCAATGACCCCAATCCCAATGACCCCCGCGCCCGCATGGACAGCGAGAGCCTCTTCAAAGATG
GAAAGCTACTTCCTGCCATCACCATCCTGGGCTGCCGAGTACGGATCCCCGCTGAGGTGCTTAT
CTTGAACTCGATTGTTCTACCACATAAGGAGCTGAGTCGAAGCTTCACCAACCAAATCATTCTG
TGAGGTGCTGCCCAAGGACTCCACCCACTCTCCTGTGGGATGCCGCCTGCCTGACCAGCTCTGT
CCAGAAAGGACCTGAGGAAGCCACCTCATAGGGAGCCATGTGTGTGGCTGGGGACACCTGGCCT
CCCTCCCCACCCCCAAATAAACCCCTGTGAACCTTGGAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006245271 ⟹ XP_006245333

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,375,373 - 84,382,917 (+)	NCBI
mRatBN7.2	9	76,926,725 - 76,934,274 (+)	NCBI
Rnor_6.0	9	82,632,267 - 82,639,811 (+)	NCBI
Rnor_5.0	9	82,401,531 - 82,409,072 (+)	NCBI

Sequence:

show sequence

CCCTGCGAAGGTGCTCTCGCGGGTTGTAAGGAGACACGTACACGGAAGGAGCAAGCACTGGCAG
ACGGCAGAGCTGGCGTAAAGGGAACTAGTGGTTTAGGTCACAACGACCATCATGCTCAAAGCTG
TGATCCTCATTGGAGGACCCCAGAAGGGGACTCGCTTCAGGCCTTTGTCTTTTGAAGTGCCCAA
ACCGTTGTTCCCTGTGGCAGGTGTCCCTATGATCCAGCACCATATAGAAGCCTGTGCCCAGGTC
CCTGGGATGCAGGAGATTCTACTCATTGGCTTCTACCAGCCTGATGAGGCTCTCACCCAGTTCC
TGGAAGCTGCACAGCAGGAGTTTAACCTTCCAGTCAGGTATCTGCAGGAGTTCACTCCCCTTGG
CACAGGGGGTGGCCTCTACCATTTTCGGGACCAGATCCTGGCTGGCGCACCTGAGGCCTTCTTC
GTGCTCAATGCTGATGTCTGTTCTGACTTCCCTCTGAGTGCCATGTTGGATGCTCACAGGCTCC
AACGCCACCCTTTCCTACTCCTTGGCACCACGGCGAACAGGACACAATCTCTCAACTACGGCTG
CATCGTTGAGAATCCACAGACGCATGAGGTCCTGCACTATGTGGAGAAACCCAGCACCTTTATC
AGCGACATCATCAACTGTGGCATCTACCTTTTCTCCCCAGAAGCCCTGAAGCCTCTCCGGGATG
TTTTCCAGCGTAATCAGCAGGATGGGCAACTGGAGGAATCTCCAGGCTCCTGGCCTGGTGCAGG
GACCATCCGACTAGAGCAGGATGTGTTCTCAGCCCTGGCTGGGCAGGGCCAAATCTATGTGCAC
CTCACCGACGGCATCTGGAGCCAGATCAAGTCGGCAGGCTCGGCCCTTTATGCTTCCCGCCTGT
ATCTGGGGCGATACCAGATCACCCACCCAGAACGGCTAGCCAGACACACTGCAGGGGGCCCACG
AATCAGAGGAAATGTTTACATCCATCCAACTGCTAAAGTGGCCCCATCAGCTGTGCTGGGCCCC
AATGTCTCCATTGGGAAGGGGGTGACCATAGGCGAGGGTGTGCGTCTGCGGGAGAGTATTGTCC
TCCATGGAGCCACACTGCAGGAACACACCTGTGTCCTTCACAGCATTGTGGGCTGGGGGAGCAC
TGTGGGGCGCTGGGCCCGCGTAGAGGGGACTCCCAATGACCCCAATCCCAATGACCCCCGCGCC
CGCATGGACAGCGAGAGCCTCTTCAAAGATGGAAAGCTACTTCCTGCCATCACCATCCTGGGCT
GCCGAGTACGGATCCCCGCTGAGGTGCTTATCTTGAACTCGATTGTTCTACCACATAAGGAGCT
GAGTCGAAGCTTCACCAACCAAATCATTCTGTGAGGTGCTGCCCAAGGACTCCACCCACTCTCC
TGTGGGATGCCGCCTGCCTGACCAGCTCTGTCCAGAAAGGACCTGAGGAAGCCACCTCATAGGG
AGCCATGTGTGTGGCTGGGGACACCTGGCCTCCCTCCCCACCCCCAAATAAACCCCTGTGAACC
TTGGA

hide sequence

RefSeq Acc Id:

XM_063267627 ⟹ XP_063123697

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,375,434 - 84,382,917 (+)	NCBI

RefSeq Acc Id:

XM_063267628 ⟹ XP_063123698

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,375,437 - 84,382,917 (+)	NCBI

RefSeq Acc Id:

XM_063267630 ⟹ XP_063123700

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,375,387 - 84,382,917 (+)	NCBI

RefSeq Acc Id:

XM_063267631 ⟹ XP_063123701

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,375,661 - 84,382,917 (+)	NCBI

RefSeq Acc Id:

XM_063267632 ⟹ XP_063123702

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,375,482 - 84,382,917 (+)	NCBI

RefSeq Acc Id:

XR_010054629

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,375,434 - 84,382,221 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001020227	(Get FASTA)	NCBI Sequence Viewer
	NP_001419650	(Get FASTA)	NCBI Sequence Viewer
	NP_001419651	(Get FASTA)	NCBI Sequence Viewer
	NP_001419652	(Get FASTA)	NCBI Sequence Viewer
	NP_001419653	(Get FASTA)	NCBI Sequence Viewer
	XP_006245333	(Get FASTA)	NCBI Sequence Viewer
	XP_063123697	(Get FASTA)	NCBI Sequence Viewer
	XP_063123698	(Get FASTA)	NCBI Sequence Viewer
	XP_063123700	(Get FASTA)	NCBI Sequence Viewer
	XP_063123701	(Get FASTA)	NCBI Sequence Viewer
	XP_063123702	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH83763	(Get FASTA)	NCBI Sequence Viewer
	EDL75439	(Get FASTA)	NCBI Sequence Viewer
	EDL75440	(Get FASTA)	NCBI Sequence Viewer
	EDL75441	(Get FASTA)	NCBI Sequence Viewer
	EDL75442	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000027064.3
	ENSRNOP00000074442.2
	ENSRNOP00000078288.1
	ENSRNOP00055014392
	ENSRNOP00060011243
	ENSRNOP00065010055
GenBank Protein	Q5XIC1	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001020227 ⟸ NM_001025056

- UniProtKB:

Q5XIC1 (UniProtKB/Swiss-Prot), A6JW33 (UniProtKB/TrEMBL), A0A8I5ZKL2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDEA
LTQFLEAAQQEFNLPVRYLQEFTPLGTGGGLYHFRDQILAGAPEAFFVLNADVCSDFPLSAMLD
AHRLQRHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFISDIINCGIYLFSPEALK
PLRDVFQRNQQDGQLEESPGSWPGAGTIRLEQDVFSALAGQGQIYVHLTDGIWSQIKSAGSALY
ASRLYLGRYQITHPERLARHTAGGPRIRGNVYIHPTAKVAPSAVLGPNVSIGKGVTIGEGVRLR
ESIVLHGATLQEHTCVLHSIVGWGSTVGRWARVEGTPNDPNPNDPRARMDSESLFKDGKLLPAI
TILGCRVRIPAEVLILNSIVLPHKELSRSFTNQIIL

hide sequence

RefSeq Acc Id:	XP_006245333 ⟸ XM_006245271
- Peptide Label:	isoform X1
- UniProtKB:	Q5XIC1 (UniProtKB/Swiss-Prot), A6JW33 (UniProtKB/TrEMBL), A0A8I5ZKL2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDEA LTQFLEAAQQEFNLPVRYLQEFTPLGTGGGLYHFRDQILAGAPEAFFVLNADVCSDFPLSAMLD AHRLQRHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFISDIINCGIYLFSPEALK PLRDVFQRNQQDGQLEESPGSWPGAGTIRLEQDVFSALAGQGQIYVHLTDGIWSQIKSAGSALY ASRLYLGRYQITHPERLARHTAGGPRIRGNVYIHPTAKVAPSAVLGPNVSIGKGVTIGEGVRLR ESIVLHGATLQEHTCVLHSIVGWGSTVGRWARVEGTPNDPNPNDPRARMDSESLFKDGKLLPAI TILGCRVRIPAEVLILNSIVLPHKELSRSFTNQIIL hide sequence

Ensembl Acc Id:

ENSRNOP00000074442 ⟸ ENSRNOT00000085165

Ensembl Acc Id:

ENSRNOP00000027064 ⟸ ENSRNOT00000027064

Ensembl Acc Id:

ENSRNOP00000078288 ⟸ ENSRNOT00000109761

RefSeq Acc Id:	XP_063123700 ⟸ XM_063267630
- Peptide Label:	isoform X1
- UniProtKB:	Q5XIC1 (UniProtKB/Swiss-Prot), A0A8I5ZKL2 (UniProtKB/TrEMBL), A6JW33 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123697 ⟸ XM_063267627
- Peptide Label:	isoform X1
- UniProtKB:	Q5XIC1 (UniProtKB/Swiss-Prot), A0A8I5ZKL2 (UniProtKB/TrEMBL), A6JW33 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123698 ⟸ XM_063267628
- Peptide Label:	isoform X1
- UniProtKB:	Q5XIC1 (UniProtKB/Swiss-Prot), A0A8I5ZKL2 (UniProtKB/TrEMBL), A6JW33 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123702 ⟸ XM_063267632
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZKL2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123701 ⟸ XM_063267631
- Peptide Label:	isoform X1
- UniProtKB:	Q5XIC1 (UniProtKB/Swiss-Prot), A0A8I5ZKL2 (UniProtKB/TrEMBL), A6JW33 (UniProtKB/TrEMBL)

Protein Domains

Nucleotidyl transferase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5XIC1-F1-model_v2	AlphaFold	Q5XIC1	1-420	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696796

Promoter ID:

EPDNEW_R7305

Type:

multiple initiation site

Name:

Gmppa_1

Description:

GDP-mannose pyrophosphorylase A

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	82,632,329 - 82,632,389	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1560644	AgrOrtholog
BioCyc Gene	G2FUF-27069	BioCyc
Ensembl Genes	ENSRNOG00000019946	Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00055010546	UniProtKB/Swiss-Prot
	ENSRNOG00060008709	UniProtKB/Swiss-Prot
	ENSRNOG00065008539	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000027064.5	UniProtKB/Swiss-Prot
	ENSRNOT00000085165.2	UniProtKB/TrEMBL
	ENSRNOT00000109761.1	UniProtKB/TrEMBL
	ENSRNOT00055017869	UniProtKB/Swiss-Prot
	ENSRNOT00060014587	UniProtKB/Swiss-Prot
	ENSRNOT00065013554	UniProtKB/Swiss-Prot
Gene3D-CATH	Hexapeptide repeat proteins	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7193128	IMAGE-MGC_LOAD
InterPro	Hexapep	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Hexapep_transf_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Mannose-1P_guanyltransferase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	NTP_transferase_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Nucleotide-diphossugar_trans	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:501167	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:94705	IMAGE-MGC_LOAD
NCBI Gene	501167	ENTREZGENE
PANTHER	MANNOSE-1-PHOSPHATE GUANYLTRANSFERASE ALPHA	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SUGAR-1-PHOSPHATE GUANYL TRANSFERASE	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Hexapep	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	NTP_transferase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Gmppa	PhenoGen
PROSITE	HEXAPEP_TRANSFERASES	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000019946	RatGTEx
	ENSRNOG00055010546	RatGTEx
	ENSRNOG00060008709	RatGTEx
	ENSRNOG00065008539	RatGTEx
Superfamily-SCOP	SSF53448	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2K824_RAT	UniProtKB/TrEMBL
	A0A8I5ZKL2	ENTREZGENE, UniProtKB/TrEMBL
	A6JW33	ENTREZGENE, UniProtKB/TrEMBL
	A6JW34_RAT	UniProtKB/TrEMBL
	GMPPA_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-02-09	Gmppa	GDP-mannose pyrophosphorylase A			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)